data_PB1 # _chem_comp.id PB1 _chem_comp.name "3-(2-AMINOETHYL)-4-(AMINOMETHYL)HEPTANEDIOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 232.277 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PV8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PB1 O3 O3 O 0 1 N N N 26.605 53.295 13.205 0.050 -0.361 -5.154 O3 PB1 1 PB1 C8 C8 C 0 1 N N N 27.678 52.658 13.295 0.119 0.185 -3.931 C8 PB1 2 PB1 O4 O4 O 0 1 N N N 27.898 51.595 12.687 0.564 1.300 -3.791 O4 PB1 3 PB1 C7 C7 C 0 1 N N N 28.819 53.205 14.167 -0.359 -0.589 -2.731 C7 PB1 4 PB1 C6 C6 C 0 1 N N N 28.322 54.165 15.268 -0.172 0.255 -1.469 C6 PB1 5 PB1 C3 C3 C 0 1 N N S 29.415 55.164 15.715 -0.528 -0.580 -0.238 C3 PB1 6 PB1 C2 C2 C 0 1 N N N 30.691 54.382 16.089 -2.018 -0.923 -0.268 C2 PB1 7 PB1 N1 N1 N 0 1 N N N 30.731 53.879 17.484 -2.807 0.315 -0.235 N1 PB1 8 PB1 C4 C4 C 0 1 N N R 28.847 55.930 16.948 -0.214 0.218 1.028 C4 PB1 9 PB1 C9 C9 C 0 1 N N N 28.244 54.941 17.970 -0.569 -0.617 2.259 C9 PB1 10 PB1 C10 C10 C 0 1 N N N 26.934 55.133 18.738 -0.399 0.219 3.501 C10 PB1 11 PB1 O1 O1 O 0 1 N N N 26.513 56.244 18.966 -0.151 1.398 3.405 O1 PB1 12 PB1 O2 O2 O 0 1 N N N 26.303 54.159 19.071 -0.521 -0.344 4.713 O2 PB1 13 PB1 C5 C5 C 0 1 N N N 29.926 56.828 17.608 1.276 0.561 1.058 C5 PB1 14 PB1 C11 C11 C 0 1 N N N 30.659 56.049 18.706 2.098 -0.721 0.924 C11 PB1 15 PB1 N12 N12 N 0 1 N N N 29.874 55.916 19.934 3.529 -0.394 0.978 N12 PB1 16 PB1 HO3 HO3 H 0 1 N N N 26.437 54.106 13.669 0.357 0.136 -5.924 HO3 PB1 17 PB1 H71 1H7 H 0 1 N N N 29.421 52.374 14.603 0.216 -1.510 -2.640 H71 PB1 18 PB1 H72 2H7 H 0 1 N N N 29.604 53.688 13.540 -1.415 -0.832 -2.852 H72 PB1 19 PB1 H61 1H6 H 0 1 N N N 27.396 54.698 14.949 -0.823 1.128 -1.516 H61 PB1 20 PB1 H62 2H6 H 0 1 N N N 27.912 53.601 16.138 0.865 0.580 -1.400 H62 PB1 21 PB1 H3 H3 H 0 1 N N N 29.680 55.883 14.905 0.056 -1.500 -0.242 H3 PB1 22 PB1 H21 1H2 H 0 1 N N N 30.852 53.543 15.372 -2.268 -1.535 0.598 H21 PB1 23 PB1 H22 2H2 H 0 1 N N N 31.596 54.997 15.875 -2.246 -1.475 -1.180 H22 PB1 24 PB1 HN11 1HN1 H 0 0 N N N 31.574 53.361 17.731 -3.773 0.047 -0.348 HN11 PB1 25 PB1 HN12 2HN1 H 0 0 N N N 29.903 53.316 17.679 -2.717 0.691 0.695 HN12 PB1 26 PB1 H4 H4 H 0 1 N N N 28.033 56.601 16.588 -0.799 1.138 1.032 H4 PB1 27 PB1 H91 1H9 H 0 1 N N N 28.163 53.958 17.448 0.088 -1.484 2.312 H91 PB1 28 PB1 H92 2H9 H 0 1 N N N 29.034 54.756 18.734 -1.605 -0.950 2.185 H92 PB1 29 PB1 HO2 HO2 H 0 1 N N N 25.489 54.278 19.547 -0.412 0.192 5.509 HO2 PB1 30 PB1 H51 1H5 H 0 1 N N N 30.631 57.253 16.856 1.517 1.051 2.002 H51 PB1 31 PB1 H52 2H5 H 0 1 N N N 29.497 57.783 17.989 1.511 1.231 0.231 H52 PB1 32 PB1 H111 1H11 H 0 0 N N N 30.988 55.050 18.333 1.849 -1.399 1.741 H111 PB1 33 PB1 H112 2H11 H 0 0 N N N 31.655 56.502 18.917 1.870 -1.201 -0.027 H112 PB1 34 PB1 H121 1H12 H 0 0 N N N 30.361 55.397 20.664 4.029 -1.266 0.887 H121 PB1 35 PB1 H122 2H12 H 0 0 N N N 28.962 55.501 19.740 3.734 0.145 0.151 H122 PB1 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PB1 O3 C8 SING N N 1 PB1 O3 HO3 SING N N 2 PB1 C8 O4 DOUB N N 3 PB1 C8 C7 SING N N 4 PB1 C7 C6 SING N N 5 PB1 C7 H71 SING N N 6 PB1 C7 H72 SING N N 7 PB1 C6 C3 SING N N 8 PB1 C6 H61 SING N N 9 PB1 C6 H62 SING N N 10 PB1 C3 C2 SING N N 11 PB1 C3 C4 SING N N 12 PB1 C3 H3 SING N N 13 PB1 C2 N1 SING N N 14 PB1 C2 H21 SING N N 15 PB1 C2 H22 SING N N 16 PB1 N1 HN11 SING N N 17 PB1 N1 HN12 SING N N 18 PB1 C4 C9 SING N N 19 PB1 C4 C5 SING N N 20 PB1 C4 H4 SING N N 21 PB1 C9 C10 SING N N 22 PB1 C9 H91 SING N N 23 PB1 C9 H92 SING N N 24 PB1 C10 O1 DOUB N N 25 PB1 C10 O2 SING N N 26 PB1 O2 HO2 SING N N 27 PB1 C5 C11 SING N N 28 PB1 C5 H51 SING N N 29 PB1 C5 H52 SING N N 30 PB1 C11 N12 SING N N 31 PB1 C11 H111 SING N N 32 PB1 C11 H112 SING N N 33 PB1 N12 H121 SING N N 34 PB1 N12 H122 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PB1 SMILES ACDLabs 10.04 "O=C(O)CCC(CN)C(CCN)CC(=O)O" PB1 SMILES_CANONICAL CACTVS 3.341 "NCC[C@H](CC(O)=O)[C@@H](CN)CCC(O)=O" PB1 SMILES CACTVS 3.341 "NCC[CH](CC(O)=O)[CH](CN)CCC(O)=O" PB1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)[C@H](CN)[C@H](CCN)CC(=O)O" PB1 SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(=O)O)C(CN)C(CCN)CC(=O)O" PB1 InChI InChI 1.03 "InChI=1S/C10H20N2O4/c11-4-3-7(5-10(15)16)8(6-12)1-2-9(13)14/h7-8H,1-6,11-12H2,(H,13,14)(H,15,16)/t7-,8-/m1/s1" PB1 InChIKey InChI 1.03 QMRGRIXXWLVLTR-HTQZYQBOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PB1 "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4S)-3-(2-aminoethyl)-4-(aminomethyl)heptanedioic acid" PB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,4S)-3-(2-aminoethyl)-4-(aminomethyl)heptanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PB1 "Create component" 2003-07-01 RCSB PB1 "Modify descriptor" 2011-06-04 RCSB #