data_PB4 # _chem_comp.id PB4 _chem_comp.name "N,N'-BIS(4-FLUORO-3-METHYLBENZYL)PYRIMIDINE-4,6-DICARBOXAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H20 F2 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(4-FLUORO-3-METHYL-BENZYLAMIDE)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-10-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 410.417 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PB4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1XUD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PB4 C1 C1 C 0 1 Y N N -11.603 27.335 44.851 0.798 0.007 -1.197 C1 PB4 1 PB4 C2 C2 C 0 1 Y N N -11.040 27.942 45.966 1.500 -0.146 0.000 C2 PB4 2 PB4 C3 C3 C 0 1 Y N N -9.658 27.993 46.058 0.799 0.007 1.198 C3 PB4 3 PB4 C7 C7 C 0 1 N N N -5.802 27.967 53.452 -1.878 -1.970 8.159 C7 PB4 4 PB4 C8 C8 C 0 1 N N N -18.288 22.176 44.244 -1.876 -1.971 -8.159 C8 PB4 5 PB4 C9 C9 C 0 1 N N N -9.054 28.610 47.228 1.492 -0.144 2.502 C9 PB4 6 PB4 C10 C10 C 0 1 N N N -6.923 28.823 48.544 1.489 -0.144 4.939 C10 PB4 7 PB4 C11 C11 C 0 1 Y N N -7.083 28.004 49.813 0.504 0.071 6.059 C11 PB4 8 PB4 C12 C12 C 0 1 N N N -13.065 27.263 44.746 1.491 -0.144 -2.501 C12 PB4 9 PB4 C13 C13 C 0 1 N N N -15.012 26.067 43.631 1.488 -0.143 -4.938 C13 PB4 10 PB4 C14 C14 C 0 1 Y N N -15.603 24.956 44.508 0.502 0.072 -6.058 C14 PB4 11 PB4 C15 C15 C 0 1 Y N N -16.631 24.114 43.985 -0.199 -0.999 -6.575 C15 PB4 12 PB4 C16 C16 C 0 1 Y N N -16.728 22.856 46.166 -1.304 0.467 -8.114 C16 PB4 13 PB4 C19 C19 C 0 1 Y N N -7.948 26.840 49.844 0.309 1.340 6.572 C19 PB4 14 PB4 C20 C20 C 0 1 Y N N -8.119 26.059 51.011 -0.593 1.539 7.599 C20 PB4 15 PB4 C21 C21 C 0 1 Y N N -7.418 26.427 52.188 -1.306 0.467 8.111 C21 PB4 16 PB4 C22 C22 C 0 1 Y N N -6.382 28.368 51.003 -0.202 -0.999 6.572 C22 PB4 17 PB4 N1 N1 N 0 1 Y N N -8.830 27.444 45.047 -0.499 0.286 1.152 N1 PB4 18 PB4 C5 C5 C 0 1 Y N N -9.389 26.832 43.919 -1.121 0.427 0.000 C5 PB4 19 PB4 N2 N2 N 0 1 Y N N -10.781 26.785 43.839 -0.499 0.291 -1.151 N2 PB4 20 PB4 N3 N3 N 0 1 N N N -7.715 28.315 47.385 0.805 0.005 3.652 N3 PB4 21 PB4 N4 N4 N 0 1 N N N -13.562 26.303 43.858 0.804 0.006 -3.651 N4 PB4 22 PB4 C6 C6 C 0 1 Y N N -17.185 23.073 44.815 -1.107 -0.802 -7.599 C6 PB4 23 PB4 C17 C17 C 0 1 Y N N -15.701 23.689 46.697 -0.596 1.539 -7.598 C17 PB4 24 PB4 C18 C18 C 0 1 Y N N -15.149 24.724 45.873 0.306 1.341 -6.571 C18 PB4 25 PB4 C4 C4 C 0 1 Y N N -6.556 27.575 52.177 -1.106 -0.802 7.599 C4 PB4 26 PB4 O1 O1 O 0 1 N N N -13.883 27.952 45.382 2.678 -0.403 -2.532 O1 PB4 27 PB4 O2 O2 O 0 1 N N N -9.610 29.315 48.077 2.678 -0.404 2.533 O2 PB4 28 PB4 F1 F1 F 0 1 N N N -7.588 25.598 53.442 -2.189 0.661 9.115 F1 PB4 29 PB4 F2 F2 F 0 1 N N N -17.291 21.819 46.972 -2.187 0.660 -9.118 F2 PB4 30 PB4 H2 H2 H 0 1 N N N -11.675 28.373 46.759 2.555 -0.376 0.000 H2 PB4 31 PB4 H71 1H7 H 0 1 N N N -5.216 27.086 53.803 -1.318 -2.415 8.981 H71 PB4 32 PB4 H72 2H7 H 0 1 N N N -5.132 28.859 53.444 -2.845 -1.625 8.523 H72 PB4 33 PB4 H73 3H7 H 0 1 N N N -6.540 28.085 54.279 -2.028 -2.714 7.376 H73 PB4 34 PB4 H81 1H8 H 0 1 N N N -17.925 21.722 43.293 -1.316 -2.415 -8.982 H81 PB4 35 PB4 H82 2H8 H 0 1 N N N -18.716 21.371 44.886 -2.026 -2.715 -7.378 H82 PB4 36 PB4 H83 3H8 H 0 1 N N N -19.119 22.821 43.874 -2.844 -1.627 -8.524 H83 PB4 37 PB4 H101 1H10 H 0 0 N N N -5.846 28.914 48.271 2.290 0.591 5.012 H101 PB4 38 PB4 H102 2H10 H 0 0 N N N -7.160 29.895 48.739 1.909 -1.147 5.012 H102 PB4 39 PB4 H131 1H13 H 0 0 N N N -15.588 27.014 43.755 1.908 -1.145 -5.012 H131 PB4 40 PB4 H132 2H13 H 0 0 N N N -15.213 25.865 42.553 2.288 0.593 -5.012 H132 PB4 41 PB4 H15 H15 H 0 1 N N N -16.992 24.266 42.954 -0.045 -1.990 -6.174 H15 PB4 42 PB4 H19 H19 H 0 1 N N N -8.501 26.535 48.939 0.862 2.176 6.171 H19 PB4 43 PB4 H20 H20 H 0 1 N N N -8.786 25.180 51.003 -0.745 2.530 8.000 H20 PB4 44 PB4 H22 H22 H 0 1 N N N -5.717 29.248 51.015 -0.049 -1.990 6.171 H22 PB4 45 PB4 H5 H5 H 0 1 N N N -8.757 26.403 43.124 -2.176 0.658 0.001 H5 PB4 46 PB4 HN3 HN3 H 0 1 N N N -7.315 27.728 46.653 -0.141 0.213 3.627 HN3 PB4 47 PB4 HN4 HN4 H 0 1 N N N -12.851 25.763 43.365 -0.143 0.213 -3.626 HN4 PB4 48 PB4 H17 H17 H 0 1 N N N -15.340 23.535 47.728 -0.749 2.530 -7.998 H17 PB4 49 PB4 H18 H18 H 0 1 N N N -14.354 25.358 46.300 0.859 2.177 -6.169 H18 PB4 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PB4 C1 C2 SING Y N 1 PB4 C1 C12 SING N N 2 PB4 C1 N2 DOUB Y N 3 PB4 C2 C3 DOUB Y N 4 PB4 C2 H2 SING N N 5 PB4 C3 C9 SING N N 6 PB4 C3 N1 SING Y N 7 PB4 C7 C4 SING N N 8 PB4 C7 H71 SING N N 9 PB4 C7 H72 SING N N 10 PB4 C7 H73 SING N N 11 PB4 C8 C6 SING N N 12 PB4 C8 H81 SING N N 13 PB4 C8 H82 SING N N 14 PB4 C8 H83 SING N N 15 PB4 C9 N3 SING N N 16 PB4 C9 O2 DOUB N N 17 PB4 C10 C11 SING N N 18 PB4 C10 N3 SING N N 19 PB4 C10 H101 SING N N 20 PB4 C10 H102 SING N N 21 PB4 C11 C19 SING Y N 22 PB4 C11 C22 DOUB Y N 23 PB4 C12 N4 SING N N 24 PB4 C12 O1 DOUB N N 25 PB4 C13 C14 SING N N 26 PB4 C13 N4 SING N N 27 PB4 C13 H131 SING N N 28 PB4 C13 H132 SING N N 29 PB4 C14 C15 DOUB Y N 30 PB4 C14 C18 SING Y N 31 PB4 C15 C6 SING Y N 32 PB4 C15 H15 SING N N 33 PB4 C16 C6 DOUB Y N 34 PB4 C16 C17 SING Y N 35 PB4 C16 F2 SING N N 36 PB4 C19 C20 DOUB Y N 37 PB4 C19 H19 SING N N 38 PB4 C20 C21 SING Y N 39 PB4 C20 H20 SING N N 40 PB4 C21 C4 DOUB Y N 41 PB4 C21 F1 SING N N 42 PB4 C22 C4 SING Y N 43 PB4 C22 H22 SING N N 44 PB4 N1 C5 DOUB Y N 45 PB4 C5 N2 SING Y N 46 PB4 C5 H5 SING N N 47 PB4 N3 HN3 SING N N 48 PB4 N4 HN4 SING N N 49 PB4 C17 C18 DOUB Y N 50 PB4 C17 H17 SING N N 51 PB4 C18 H18 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PB4 SMILES ACDLabs 10.04 "O=C(c2ncnc(C(=O)NCc1ccc(F)c(c1)C)c2)NCc3ccc(F)c(c3)C" PB4 SMILES_CANONICAL CACTVS 3.341 "Cc1cc(CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(F)c(C)c3)ccc1F" PB4 SMILES CACTVS 3.341 "Cc1cc(CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(F)c(C)c3)ccc1F" PB4 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(ccc1F)CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(c(c3)C)F" PB4 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(ccc1F)CNC(=O)c2cc(ncn2)C(=O)NCc3ccc(c(c3)C)F" PB4 InChI InChI 1.03 "InChI=1S/C22H20F2N4O2/c1-13-7-15(3-5-17(13)23)10-25-21(29)19-9-20(28-12-27-19)22(30)26-11-16-4-6-18(24)14(2)8-16/h3-9,12H,10-11H2,1-2H3,(H,25,29)(H,26,30)" PB4 InChIKey InChI 1.03 PYFRREJCFXFNRR-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PB4 "SYSTEMATIC NAME" ACDLabs 10.04 "N,N'-bis(4-fluoro-3-methylbenzyl)pyrimidine-4,6-dicarboxamide" PB4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N,N'-bis[(4-fluoro-3-methyl-phenyl)methyl]pyrimidine-4,6-dicarboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PB4 "Create component" 2004-10-28 RCSB PB4 "Modify descriptor" 2011-06-04 RCSB PB4 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PB4 _pdbx_chem_comp_synonyms.name "PYRIMIDINE-4,6-DICARBOXYLIC ACID BIS-(4-FLUORO-3-METHYL-BENZYLAMIDE)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##