data_PBF # _chem_comp.id PBF _chem_comp.name "PARA-(BENZOYL)-PHENYLALANINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H15 N O3" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-02-22 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.295 _chem_comp.one_letter_code F _chem_comp.three_letter_code PBF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EEN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBF N N N 0 1 N N N Y Y N 15.115 21.071 8.664 -0.471 -2.353 1.412 N PBF 1 PBF C C C 0 1 N N N Y N Y 17.395 20.308 8.489 0.380 -2.394 3.703 C PBF 2 PBF O O O 0 1 N N N Y N Y ? ? ? -0.649 -1.938 4.191 O PBF 3 PBF CA CA C 0 1 N N S Y N N 16.122 20.591 7.737 0.717 -2.278 2.224 CA PBF 4 PBF CB CB C 0 1 N N N N N N 16.369 21.608 6.635 1.484 -0.975 1.962 CB PBF 5 PBF CG CG C 0 1 Y N N N N N 15.141 21.915 5.838 2.940 -1.060 2.353 CG PBF 6 PBF CD1 CD1 C 0 1 Y N N N N N 14.267 22.915 6.245 3.319 -0.712 3.640 CD1 PBF 7 PBF CD2 CD2 C 0 1 Y N N N N N 14.832 21.170 4.708 3.871 -1.483 1.417 CD2 PBF 8 PBF CE1 CE1 C 0 1 Y N N N N N 13.090 23.170 5.528 4.664 -0.791 4.001 CE1 PBF 9 PBF CE2 CE2 C 0 1 Y N N N N N 13.658 21.420 3.993 5.216 -1.561 1.779 CE2 PBF 10 PBF CZ CZ C 0 1 Y N N N N N 12.778 22.422 4.399 5.612 -1.215 3.070 CZ PBF 11 PBF CN1 CN1 C 0 1 N N N N N N 11.497 22.678 3.615 7.015 -1.296 3.446 CN1 PBF 12 PBF ON2 ON2 O 0 1 N N N N N N 11.051 21.823 2.858 7.761 -0.317 3.292 ON2 PBF 13 PBF CT CT C 0 1 Y N N N N N 10.813 24.024 3.652 7.619 -2.533 4.026 CT PBF 14 PBF CI1 CI1 C 0 1 Y N N N N N 11.531 25.222 3.598 6.815 -3.634 4.208 CI1 PBF 15 PBF CI2 CI2 C 0 1 Y N N N N N 9.427 24.066 3.728 8.954 -2.522 4.354 CI2 PBF 16 PBF CK1 CK1 C 0 1 Y N N N N N 10.872 26.451 3.618 7.378 -4.790 4.750 CK1 PBF 17 PBF CK2 CK2 C 0 1 Y N N N N N 8.760 25.280 3.751 9.518 -3.677 4.895 CK2 PBF 18 PBF CL CL C 0 1 Y N N N N N 9.479 26.478 3.695 8.730 -4.811 5.093 CL PBF 19 PBF OXT OXT O 0 1 N Y N Y N Y 17.986 19.161 8.183 1.302 -3.050 4.447 OXT PBF 20 PBF H H H 0 1 N N N Y Y N 14.252 21.262 8.154 -0.760 -3.246 1.052 H PBF 21 PBF H2 H2 H 0 1 N Y N Y Y N 15.435 21.877 9.199 -0.871 -1.502 1.053 H2 PBF 22 PBF HA HCA H 0 1 N N N Y N N 15.758 19.651 7.258 1.321 -3.155 1.965 HCA PBF 23 PBF HB2 HB2 H 0 1 N N N N N N 16.819 22.540 7.047 1.432 -0.707 0.899 HB2 PBF 24 PBF HB3 HB3 H 0 1 N N N N N N 17.203 21.281 5.971 1.005 -0.141 2.494 HB3 PBF 25 PBF HD1 HD1 H 0 1 N N N N N N 14.508 23.509 7.142 2.587 -0.381 4.371 HD1 PBF 26 PBF HD2 HD2 H 0 1 N N N N N N 15.522 20.376 4.376 3.571 -1.755 0.409 HD2 PBF 27 PBF HE1 HE1 H 0 1 N N N N N N 12.402 23.967 5.855 4.961 -0.520 5.010 HE1 PBF 28 PBF HE2 HE2 H 0 1 N N N N N N 13.423 20.819 3.098 5.946 -1.894 1.045 HE2 PBF 29 PBF HI1 HI1 H 0 1 N N N N N N 12.632 25.197 3.538 5.760 -3.628 3.944 HI1 PBF 30 PBF HI2 HI2 H 0 1 N N N N N N 8.850 23.126 3.770 9.578 -1.644 4.205 HI2 PBF 31 PBF HK1 HK1 H 0 1 N N N N N N 11.446 27.391 3.573 6.764 -5.672 4.904 HK1 PBF 32 PBF HK2 HK2 H 0 1 N N N N N N 7.658 25.292 3.813 10.571 -3.694 5.162 HK2 PBF 33 PBF HCL HCL H 0 1 N N N N N N 8.947 27.444 3.711 9.169 -5.711 5.514 HCL PBF 34 PBF HXT HXT H 0 1 N Y N Y N Y 18.575 19.848 8.470 1.082 -3.131 5.399 HXT PBF 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBF N CA SING N N 1 PBF N H SING N N 2 PBF N H2 SING N N 3 PBF C O DOUB N N 4 PBF C CA SING N N 5 PBF C OXT SING N N 6 PBF CA CB SING N N 7 PBF CA HA SING N N 8 PBF CB CG SING N N 9 PBF CB HB2 SING N N 10 PBF CB HB3 SING N N 11 PBF CG CD1 DOUB Y N 12 PBF CG CD2 SING Y N 13 PBF CD1 CE1 SING Y N 14 PBF CD1 HD1 SING N N 15 PBF CD2 CE2 DOUB Y N 16 PBF CD2 HD2 SING N N 17 PBF CE1 CZ DOUB Y N 18 PBF CE1 HE1 SING N N 19 PBF CE2 CZ SING Y N 20 PBF CE2 HE2 SING N N 21 PBF CZ CN1 SING N N 22 PBF CN1 ON2 DOUB N N 23 PBF CN1 CT SING N N 24 PBF CT CI1 DOUB Y N 25 PBF CT CI2 SING Y N 26 PBF CI1 CK1 SING Y N 27 PBF CI1 HI1 SING N N 28 PBF CI2 CK2 DOUB Y N 29 PBF CI2 HI2 SING N N 30 PBF CK1 CL DOUB Y N 31 PBF CK1 HK1 SING N N 32 PBF CK2 CL SING Y N 33 PBF CK2 HK2 SING N N 34 PBF CL HCL SING N N 35 PBF OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBF SMILES ACDLabs 10.04 "O=C(O)C(N)Cc1ccc(cc1)C(=O)c2ccccc2" PBF SMILES_CANONICAL CACTVS 3.341 "N[C@@H](Cc1ccc(cc1)C(=O)c2ccccc2)C(O)=O" PBF SMILES CACTVS 3.341 "N[CH](Cc1ccc(cc1)C(=O)c2ccccc2)C(O)=O" PBF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)c2ccc(cc2)C[C@@H](C(=O)O)N" PBF SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)c2ccc(cc2)CC(C(=O)O)N" PBF InChI InChI 1.03 "InChI=1S/C16H15NO3/c17-14(16(19)20)10-11-6-8-13(9-7-11)15(18)12-4-2-1-3-5-12/h1-9,14H,10,17H2,(H,19,20)/t14-/m0/s1" PBF InChIKey InChI 1.03 TVIDEEHSOPHZBR-AWEZNQCLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PBF "SYSTEMATIC NAME" ACDLabs 10.04 "4-(phenylcarbonyl)-L-phenylalanine" PBF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-[4-(phenylcarbonyl)phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBF "Create component" 2000-02-22 RCSB PBF "Modify descriptor" 2011-06-04 RCSB PBF "Modify backbone" 2023-11-03 PDBE PBF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PBF _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Benzoylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #