data_PBG # _chem_comp.id PBG _chem_comp.name "3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL-3-YL]PROPANOIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-AMINOMETHYLPYRROL-3-ACETIC ACID 4-PROPIONIC ACID; PORPHOBILINOGEN; 5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROLE-3-PROPANOIC ACID ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-07-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 226.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PBG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1E51 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBG CHA CHA C 0 1 N N N 33.390 74.173 60.780 0.081 -0.107 3.563 CHA PBG 1 PBG C1A C1A C 0 1 Y N N 32.963 73.570 59.415 -0.648 -0.108 2.244 C1A PBG 2 PBG C2A C2A C 0 1 Y N N 32.433 74.373 58.244 -0.153 -0.540 1.067 C2A PBG 3 PBG C3A C3A C 0 1 Y N N 32.242 73.370 57.130 -1.160 -0.367 0.097 C3A PBG 4 PBG C4A C4A C 0 1 Y N N 32.589 71.977 57.662 -2.229 0.172 0.717 C4A PBG 5 PBG NA NA N 0 1 Y N N 33.015 72.144 59.070 -1.921 0.334 2.035 NA PBG 6 PBG C5A C5A C 0 1 N N N 32.005 75.877 58.234 1.220 -1.113 0.833 C5A PBG 7 PBG C6A C6A C 0 1 N N N 33.138 76.795 58.466 2.173 -0.002 0.475 C6A PBG 8 PBG O1A O1A O 0 1 N N N 34.379 76.231 58.657 1.777 1.137 0.415 O1A PBG 9 PBG O2A O2A O 0 1 N N N 33.021 78.153 58.503 3.462 -0.279 0.222 O2A PBG 10 PBG C7A C7A C 0 1 N N N 31.733 73.721 55.696 -1.059 -0.715 -1.365 C7A PBG 11 PBG C8A C8A C 0 1 N N N 30.834 72.616 55.154 -0.520 0.488 -2.140 C8A PBG 12 PBG C9A C9A C 0 1 N N N 29.754 73.154 54.235 -0.419 0.140 -3.602 C9A PBG 13 PBG O3A O3A O 0 1 N N N 29.574 74.495 53.907 -0.745 -0.957 -3.986 O3A PBG 14 PBG O4A O4A O 0 1 N N N 28.821 72.328 53.627 0.032 1.050 -4.479 O4A PBG 15 PBG N1 N1 N 0 1 N N N 33.841 73.096 61.642 -0.791 0.447 4.606 N1 PBG 16 PBG HHA2 2HHA H 0 0 N N N 34.151 74.980 60.670 0.981 0.502 3.480 HHA2 PBG 17 PBG HHA1 1HHA H 0 0 N N N 32.583 74.785 61.247 0.357 -1.128 3.825 HHA1 PBG 18 PBG H4A1 1H4A H 0 0 N N N 32.540 71.016 57.122 -3.168 0.432 0.250 H4A1 PBG 19 PBG HA HA H 0 1 N N N 33.299 71.395 59.702 -2.509 0.703 2.712 HA PBG 20 PBG H5A2 2H5A H 0 0 N N N 31.469 76.133 57.290 1.565 -1.610 1.740 H5A2 PBG 21 PBG H5A1 1H5A H 0 0 N N N 31.183 76.063 58.964 1.179 -1.835 0.017 H5A1 PBG 22 PBG H2AO OH2A H 0 0 N N N 33.750 78.743 58.652 4.073 0.433 -0.007 H2AO PBG 23 PBG H7A2 2H7A H 0 0 N N N 31.227 74.714 55.669 -0.383 -1.561 -1.491 H7A2 PBG 24 PBG H7A1 1H7A H 0 0 N N N 32.576 73.943 55.002 -2.046 -0.979 -1.745 H7A1 PBG 25 PBG H8A2 2H8A H 0 0 N N N 31.431 71.820 54.651 -1.196 1.334 -2.013 H8A2 PBG 26 PBG H8A1 1H8A H 0 0 N N N 30.394 72.011 55.981 0.466 0.752 -1.760 H8A1 PBG 27 PBG H4AO OH4A H 0 0 N N N 28.144 72.665 53.051 0.097 0.827 -5.418 H4AO PBG 28 PBG H12 2H1 H 0 1 N N N 34.121 73.492 62.539 -0.264 0.428 5.466 H12 PBG 29 PBG H11 1H1 H 0 1 N N N 34.578 72.536 61.214 -0.936 1.419 4.376 H11 PBG 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBG CHA C1A SING N N 1 PBG CHA N1 SING N N 2 PBG CHA HHA2 SING N N 3 PBG CHA HHA1 SING N N 4 PBG C1A C2A DOUB Y N 5 PBG C1A NA SING Y N 6 PBG C2A C3A SING Y N 7 PBG C2A C5A SING N N 8 PBG C3A C4A DOUB Y N 9 PBG C3A C7A SING N N 10 PBG C4A NA SING Y N 11 PBG C4A H4A1 SING N N 12 PBG NA HA SING N N 13 PBG C5A C6A SING N N 14 PBG C5A H5A2 SING N N 15 PBG C5A H5A1 SING N N 16 PBG C6A O1A DOUB N N 17 PBG C6A O2A SING N N 18 PBG O2A H2AO SING N N 19 PBG C7A C8A SING N N 20 PBG C7A H7A2 SING N N 21 PBG C7A H7A1 SING N N 22 PBG C8A C9A SING N N 23 PBG C8A H8A2 SING N N 24 PBG C8A H8A1 SING N N 25 PBG C9A O3A DOUB N N 26 PBG C9A O4A SING N N 27 PBG O4A H4AO SING N N 28 PBG N1 H12 SING N N 29 PBG N1 H11 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBG SMILES ACDLabs 10.04 "O=C(O)CCc1c(c(nc1)CN)CC(=O)O" PBG SMILES_CANONICAL CACTVS 3.341 "NCc1[nH]cc(CCC(O)=O)c1CC(O)=O" PBG SMILES CACTVS 3.341 "NCc1[nH]cc(CCC(O)=O)c1CC(O)=O" PBG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(c(c([nH]1)CN)CC(=O)O)CCC(=O)O" PBG SMILES "OpenEye OEToolkits" 1.5.0 "c1c(c(c([nH]1)CN)CC(=O)O)CCC(=O)O" PBG InChI InChI 1.03 "InChI=1S/C10H14N2O4/c11-4-8-7(3-10(15)16)6(5-12-8)1-2-9(13)14/h5,12H,1-4,11H2,(H,13,14)(H,15,16)" PBG InChIKey InChI 1.03 QSHWIQZFGQKFMA-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PBG "SYSTEMATIC NAME" ACDLabs 10.04 "3-[5-(aminomethyl)-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid" PBG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-[5-(aminomethyl)-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBG "Create component" 2000-07-14 EBI PBG "Modify descriptor" 2011-06-04 RCSB PBG "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PBG "2-AMINOMETHYLPYRROL-3-ACETIC ACID 4-PROPIONIC ACID" ? ? 2 PBG PORPHOBILINOGEN ? ? 3 PBG "5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROLE-3-PROPANOIC ACID" ? ? ##