data_PBI # _chem_comp.id PBI _chem_comp.name "[2-AMINOMETHYL-5-OXO-4-(4-OXO-CYCLOHEXA-2,5-DIENYLMETHYL)-4,5-DIHYDRO-IMIDAZOL-1-YL] -ACETALDEHYDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-09-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 261.276 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PBI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBI N1 N1 N 0 1 N N N 25.406 27.458 35.675 3.227 0.037 2.442 N1 PBI 1 PBI CA1 CA1 C 0 1 N N N 26.308 26.481 36.174 1.906 0.161 3.071 CA1 PBI 2 PBI C1 C1 C 0 1 N N N 26.937 27.081 37.381 0.864 0.401 2.009 C1 PBI 3 PBI N2 N2 N 0 1 N N N 28.054 27.803 37.334 1.136 0.479 0.754 N2 PBI 4 PBI N3 N3 N 0 1 N N N 26.358 26.995 38.704 -0.467 0.554 2.280 N3 PBI 5 PBI C2 C2 C 0 1 N N N 27.283 27.657 39.543 -1.165 0.758 1.142 C2 PBI 6 PBI O2 O2 O 0 1 N N N 27.118 27.734 40.748 -2.359 0.932 1.028 O2 PBI 7 PBI CA2 CA2 C 0 1 N N S 28.362 28.145 38.650 -0.127 0.717 0.038 CA2 PBI 8 PBI CA3 CA3 C 0 1 N N N 25.061 26.556 39.110 -1.055 0.509 3.622 CA3 PBI 9 PBI C3 C3 C 0 1 N N N 24.946 25.115 39.570 -1.452 -0.906 3.949 C3 PBI 10 PBI O3 O3 O 0 1 N N N 24.029 24.731 40.304 -0.965 -1.465 4.902 O3 PBI 11 PBI CB2 CB2 C 0 1 N N N 29.435 28.832 39.133 -0.417 -0.427 -0.934 CB2 PBI 12 PBI CG2 CG2 C 0 1 N N N 30.578 29.341 38.520 0.700 -0.507 -1.975 CG2 PBI 13 PBI CD1 CD1 C 0 1 N N N 30.739 29.209 37.103 0.400 -1.630 -2.918 CD1 PBI 14 PBI CD2 CD2 C 0 1 N N N 31.642 30.003 39.218 0.815 0.816 -2.662 CD2 PBI 15 PBI CE1 CE1 C 0 1 N N N 31.815 29.719 36.439 -0.057 -1.439 -4.148 CE1 PBI 16 PBI CE2 CE2 C 0 1 N N N 32.748 30.482 38.586 0.361 1.036 -3.889 CE2 PBI 17 PBI CZ CZ C 0 1 N N N 32.885 30.435 37.141 -0.277 -0.064 -4.633 CZ PBI 18 PBI OH OH O 0 1 N N N 33.865 30.946 36.542 -0.962 0.154 -5.615 OH PBI 19 PBI HN11 1HN1 H 0 0 N N N 24.974 27.046 34.847 3.207 -0.804 1.887 HN11 PBI 20 PBI HN12 2HN1 H 0 0 N N N 25.843 28.362 35.498 3.889 -0.121 3.186 HN12 PBI 21 PBI HA11 1HA1 H 0 0 N N N 25.830 25.492 36.366 1.672 -0.757 3.608 HA11 PBI 22 PBI HA12 2HA1 H 0 0 N N N 27.046 26.129 35.416 1.913 0.998 3.769 HA12 PBI 23 PBI HA2 HA2 H 0 1 N N N 29.381 28.589 38.570 -0.093 1.669 -0.491 HA2 PBI 24 PBI HA31 1HA3 H 0 0 N N N 24.666 27.234 39.901 -0.324 0.859 4.350 HA31 PBI 25 PBI HA32 2HA3 H 0 0 N N N 24.327 26.748 38.292 -1.936 1.150 3.654 HA32 PBI 26 PBI HC3 HC3 H 0 1 N N N 25.598 24.254 39.346 -2.173 -1.422 3.331 HC3 PBI 27 PBI HB21 1HB2 H 0 0 N N N 28.987 29.710 39.653 -0.470 -1.366 -0.384 HB21 PBI 28 PBI HB22 2HB2 H 0 0 N N N 29.826 28.188 39.954 -1.368 -0.245 -1.435 HB22 PBI 29 PBI HG2 HG2 H 0 1 N N N 30.050 29.278 39.500 1.639 -0.719 -1.465 HG2 PBI 30 PBI HD1 HD1 H 0 1 N N N 29.990 28.683 36.486 0.565 -2.643 -2.581 HD1 PBI 31 PBI HD2 HD2 H 0 1 N N N 31.607 30.153 40.310 1.289 1.630 -2.134 HD2 PBI 32 PBI HE1 HE1 H 0 1 N N N 31.819 29.554 35.348 -0.268 -2.283 -4.788 HE1 PBI 33 PBI HE2 HE2 H 0 1 N N N 33.528 30.905 39.240 0.459 2.013 -4.339 HE2 PBI 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBI N1 CA1 SING N N 1 PBI N1 HN11 SING N N 2 PBI N1 HN12 SING N N 3 PBI CA1 C1 SING N N 4 PBI CA1 HA11 SING N N 5 PBI CA1 HA12 SING N N 6 PBI C1 N2 DOUB N N 7 PBI C1 N3 SING N N 8 PBI N2 CA2 SING N N 9 PBI N3 C2 SING N N 10 PBI N3 CA3 SING N N 11 PBI C2 O2 DOUB N N 12 PBI C2 CA2 SING N N 13 PBI CA2 CB2 SING N N 14 PBI CA2 HA2 SING N N 15 PBI CA3 C3 SING N N 16 PBI CA3 HA31 SING N N 17 PBI CA3 HA32 SING N N 18 PBI C3 O3 DOUB N N 19 PBI C3 HC3 SING N N 20 PBI CB2 CG2 SING N N 21 PBI CB2 HB21 SING N N 22 PBI CB2 HB22 SING N N 23 PBI CG2 CD1 SING N N 24 PBI CG2 CD2 SING N N 25 PBI CG2 HG2 SING N N 26 PBI CD1 CE1 DOUB N N 27 PBI CD1 HD1 SING N N 28 PBI CD2 CE2 DOUB N N 29 PBI CD2 HD2 SING N N 30 PBI CE1 CZ SING N N 31 PBI CE1 HE1 SING N N 32 PBI CE2 CZ SING N N 33 PBI CE2 HE2 SING N N 34 PBI CZ OH DOUB N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBI SMILES ACDLabs 10.04 "O=C1C=CC(C=C1)CC2N=C(N(C2=O)CC=O)CN" PBI SMILES_CANONICAL CACTVS 3.341 "NCC1=N[C@@H](CC2C=CC(=O)C=C2)C(=O)N1CC=O" PBI SMILES CACTVS 3.341 "NCC1=N[CH](CC2C=CC(=O)C=C2)C(=O)N1CC=O" PBI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CC(=O)C=CC1CC2C(=O)N(C(=N2)CN)CC=O" PBI SMILES "OpenEye OEToolkits" 1.5.0 "C1=CC(=O)C=CC1CC2C(=O)N(C(=N2)CN)CC=O" PBI InChI InChI 1.03 "InChI=1S/C13H15N3O3/c14-8-12-15-11(13(19)16(12)5-6-17)7-9-1-3-10(18)4-2-9/h1-4,6,9,11H,5,7-8,14H2/t11-/m0/s1" PBI InChIKey InChI 1.03 MONOYMGQJZJGBR-NSHDSACASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PBI "SYSTEMATIC NAME" ACDLabs 10.04 "{(4S)-2-(aminomethyl)-5-oxo-4-[(4-oxocyclohexa-2,5-dien-1-yl)methyl]-4,5-dihydro-1H-imidazol-1-yl}acetaldehyde" PBI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[2-(aminomethyl)-5-oxo-4-[(4-oxo-1-cyclohexa-2,5-dienyl)methyl]-4H-imidazol-1-yl]ethanal" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBI "Create component" 1999-09-07 EBI PBI "Modify descriptor" 2011-06-04 RCSB #