data_PBS # _chem_comp.id PBS _chem_comp.name "(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H63 N O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 605.844 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PBS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBS C17 C17 C 0 1 N N N 36.152 33.440 4.463 17.299 -1.370 0.785 C17 PBS 1 PBS C16 C16 C 0 1 N N N 37.193 33.087 5.520 16.122 -0.402 0.919 C16 PBS 2 PBS C15 C15 C 0 1 N N N 36.568 33.001 6.909 14.830 -1.111 0.508 C15 PBS 3 PBS C14 C14 C 0 1 N N N 37.633 32.654 7.958 13.653 -0.142 0.642 C14 PBS 4 PBS C13 C13 C 0 1 N N N 37.231 33.066 9.365 12.360 -0.851 0.231 C13 PBS 5 PBS C12 C12 C 0 1 N N N 38.495 33.396 10.140 11.183 0.117 0.365 C12 PBS 6 PBS C11 C11 C 0 1 N N N 38.192 34.400 11.253 9.891 -0.592 -0.046 C11 PBS 7 PBS C10 C10 C 0 1 N N N 39.467 34.914 11.876 8.714 0.376 0.088 C10 PBS 8 PBS C9 C9 C 0 1 N N N 39.351 36.401 12.290 7.421 -0.333 -0.323 C9 PBS 9 PBS C8 C8 C 0 1 N N N 40.725 37.088 12.179 6.244 0.636 -0.189 C8 PBS 10 PBS C7 C7 C 0 1 N N N 40.691 38.525 12.709 4.952 -0.073 -0.600 C7 PBS 11 PBS C6 C6 C 0 1 N N N 41.932 39.328 12.326 3.775 0.895 -0.466 C6 PBS 12 PBS C5 C5 C 0 1 N N N 41.795 39.983 10.955 2.482 0.186 -0.877 C5 PBS 13 PBS C4 C4 C 0 1 N N N 42.788 41.139 10.738 1.305 1.154 -0.743 C4 PBS 14 PBS C3 C3 C 0 1 N N R 44.214 40.592 10.673 0.013 0.445 -1.154 C3 PBS 15 PBS O32 O32 O 0 1 N N N 44.199 39.446 9.811 -0.262 -0.614 -0.235 O32 PBS 16 PBS C2 C2 C 0 1 N N S 45.249 41.631 10.225 -1.144 1.446 -1.140 C2 PBS 17 PBS O1 O1 O 0 1 N N N 44.830 42.170 8.977 -0.869 2.505 -2.059 O1 PBS 18 PBS C1 C1 C 0 1 N N S 45.401 42.825 11.197 -2.436 0.738 -1.551 C1 PBS 19 PBS N N N 0 1 N N N 45.811 42.431 12.570 -2.789 -0.261 -0.538 N PBS 20 PBS C18 C18 C 0 1 N N N 45.275 42.972 13.668 -3.546 -1.324 -0.875 C18 PBS 21 PBS O2 O2 O 0 1 N N N 44.394 43.834 13.645 -3.935 -1.455 -2.016 O2 PBS 22 PBS C19 C19 C 0 1 N N N 45.808 42.471 15.021 -3.908 -2.351 0.167 C19 PBS 23 PBS C20 C20 C 0 1 N N N 44.871 41.459 15.689 -4.766 -3.445 -0.472 C20 PBS 24 PBS C21 C21 C 0 1 N N N 43.590 42.056 16.242 -5.134 -4.487 0.586 C21 PBS 25 PBS C22 C22 C 0 1 N N N 42.888 41.053 17.187 -5.991 -5.581 -0.053 C22 PBS 26 PBS C23 C23 C 0 1 N N N 41.862 40.225 16.436 -6.359 -6.624 1.005 C23 PBS 27 PBS C24 C24 C 0 1 N N N 41.024 39.408 17.403 -7.217 -7.718 0.365 C24 PBS 28 PBS C25 C25 C 0 1 N N N 39.554 39.527 17.046 -7.585 -8.760 1.423 C25 PBS 29 PBS C C C 0 1 N N N 46.421 43.830 10.661 -3.565 1.764 -1.670 C PBS 30 PBS OC1 OC1 O 0 1 N N N 47.715 43.251 10.894 -3.687 2.482 -0.441 OC1 PBS 31 PBS CG1 CG1 C 0 1 N N S 48.873 44.017 10.536 -4.752 3.420 -0.615 CG1 PBS 32 PBS OG OG O 0 1 N N N 49.166 44.921 11.604 -5.993 2.721 -0.686 OG PBS 33 PBS CG CG C 0 1 N N R 49.411 44.321 12.908 -6.074 1.870 0.456 CG PBS 34 PBS CG5 CG5 C 0 1 N N N 49.694 45.479 13.882 -7.298 0.961 0.327 CG5 PBS 35 PBS OG6 OG6 O 0 1 N N N 48.625 45.583 14.842 -7.125 0.084 -0.788 OG6 PBS 36 PBS CG4 CG4 C 0 1 N N R 50.588 43.346 12.838 -6.202 2.715 1.725 CG4 PBS 37 PBS OG5 OG5 O 0 1 N N N 51.801 44.057 12.654 -7.366 3.539 1.636 OG5 PBS 38 PBS CG3 CG3 C 0 1 N N S 50.401 42.362 11.668 -4.956 3.598 1.864 CG3 PBS 39 PBS OG4 OG4 O 0 1 N N N 51.543 41.507 11.544 -5.127 4.498 2.961 OG4 PBS 40 PBS CG2 CG2 C 0 1 N N R 50.070 43.076 10.336 -4.772 4.392 0.567 CG2 PBS 41 PBS OG3 OG3 O 0 1 N N N 49.695 42.104 9.370 -3.538 5.110 0.617 OG3 PBS 42 PBS H171 1H17 H 0 0 N N N 36.608 33.502 3.447 17.136 -2.232 1.432 H171 PBS 43 PBS H172 2H17 H 0 0 N N N 35.293 32.729 4.481 17.381 -1.703 -0.250 H172 PBS 44 PBS H173 3H17 H 0 0 N N N 35.605 34.376 4.724 18.220 -0.865 1.078 H173 PBS 45 PBS H161 1H16 H 0 0 N N N 37.739 32.150 5.258 16.041 -0.069 1.953 H161 PBS 46 PBS H162 2H16 H 0 0 N N N 38.051 33.798 5.501 16.285 0.460 0.271 H162 PBS 47 PBS H151 1H15 H 0 0 N N N 36.014 33.932 7.172 14.911 -1.443 -0.527 H151 PBS 48 PBS H152 2H15 H 0 0 N N N 35.712 32.286 6.934 14.667 -1.972 1.155 H152 PBS 49 PBS H141 1H14 H 0 0 N N N 37.894 31.570 7.918 13.572 0.190 1.676 H141 PBS 50 PBS H142 2H14 H 0 0 N N N 38.621 33.088 7.681 13.816 0.719 -0.006 H142 PBS 51 PBS H131 1H13 H 0 0 N N N 36.490 33.899 9.374 12.442 -1.184 -0.804 H131 PBS 52 PBS H132 2H13 H 0 0 N N N 36.601 32.299 9.874 12.197 -1.713 0.878 H132 PBS 53 PBS H121 1H12 H 0 0 N N N 38.992 32.478 10.532 11.102 0.450 1.399 H121 PBS 54 PBS H122 2H12 H 0 0 N N N 39.311 33.753 9.469 11.346 0.979 -0.283 H122 PBS 55 PBS H111 1H11 H 0 0 N N N 37.545 35.233 10.891 9.972 -0.925 -1.081 H111 PBS 56 PBS H112 2H11 H 0 0 N N N 37.503 33.971 12.018 9.728 -1.454 0.601 H112 PBS 57 PBS H101 1H10 H 0 0 N N N 39.782 34.277 12.735 8.633 0.709 1.122 H101 PBS 58 PBS H102 2H10 H 0 0 N N N 40.341 34.747 11.204 8.877 1.238 -0.560 H102 PBS 59 PBS H91 1H9 H 0 1 N N N 38.567 36.937 11.705 7.503 -0.665 -1.358 H91 PBS 60 PBS H92 2H9 H 0 1 N N N 38.906 36.518 13.305 7.258 -1.194 0.324 H92 PBS 61 PBS H81 1H8 H 0 1 N N N 41.519 36.489 12.682 6.163 0.968 0.845 H81 PBS 62 PBS H82 2H8 H 0 1 N N N 41.113 37.050 11.134 6.407 1.497 -0.837 H82 PBS 63 PBS H71 1H7 H 0 1 N N N 39.761 39.048 12.384 5.033 -0.406 -1.635 H71 PBS 64 PBS H72 2H7 H 0 1 N N N 40.531 38.539 13.812 4.789 -0.935 0.047 H72 PBS 65 PBS H61 1H6 H 0 1 N N N 42.182 40.080 13.109 3.694 1.228 0.568 H61 PBS 66 PBS H62 2H6 H 0 1 N N N 42.851 38.700 12.382 3.938 1.757 -1.114 H62 PBS 67 PBS H51 1H5 H 0 1 N N N 41.882 39.225 10.141 2.564 -0.147 -1.912 H51 PBS 68 PBS H52 2H5 H 0 1 N N N 40.747 40.320 10.778 2.319 -0.676 -0.230 H52 PBS 69 PBS H41 1H4 H 0 1 N N N 42.531 41.748 9.840 1.224 1.487 0.291 H41 PBS 70 PBS H42 2H4 H 0 1 N N N 42.679 41.935 11.510 1.468 2.016 -1.391 H42 PBS 71 PBS H3 H3 H 0 1 N N N 44.538 40.306 11.700 0.127 0.035 -2.157 H3 PBS 72 PBS H32 H32 H 0 1 N N N 45.085 39.106 9.770 -0.355 -0.209 0.638 H32 PBS 73 PBS H2 H2 H 0 1 N N N 46.227 41.099 10.176 -1.258 1.857 -0.137 H2 PBS 74 PBS HO1 HO1 H 0 1 N N N 45.471 42.813 8.699 -0.697 2.093 -2.917 HO1 PBS 75 PBS H1 H1 H 0 1 N N N 44.385 43.281 11.263 -2.291 0.244 -2.512 H1 PBS 76 PBS HN HN H 0 1 N N N 46.521 41.728 12.776 -2.478 -0.156 0.375 HN PBS 77 PBS H191 1H19 H 0 0 N N N 46.836 42.054 14.915 -2.999 -2.793 0.574 H191 PBS 78 PBS H192 2H19 H 0 0 N N N 46.027 43.324 15.704 -4.469 -1.872 0.970 H192 PBS 79 PBS H201 1H20 H 0 0 N N N 44.638 40.623 14.987 -5.675 -3.003 -0.878 H201 PBS 80 PBS H202 2H20 H 0 0 N N N 45.412 40.896 16.485 -4.205 -3.924 -1.274 H202 PBS 81 PBS H211 1H21 H 0 0 N N N 43.771 43.037 16.739 -4.224 -4.929 0.992 H211 PBS 82 PBS H212 2H21 H 0 0 N N N 42.910 42.404 15.429 -5.695 -4.008 1.388 H212 PBS 83 PBS H221 1H22 H 0 0 N N N 43.623 40.408 17.722 -6.901 -5.139 -0.460 H221 PBS 84 PBS H222 2H22 H 0 0 N N N 42.437 41.565 18.068 -5.430 -6.061 -0.856 H222 PBS 85 PBS H231 1H23 H 0 0 N N N 41.228 40.855 15.769 -5.450 -7.066 1.411 H231 PBS 86 PBS H232 2H23 H 0 0 N N N 42.337 39.584 15.656 -6.920 -6.145 1.807 H232 PBS 87 PBS H241 1H24 H 0 0 N N N 41.357 38.345 17.449 -8.126 -7.276 -0.041 H241 PBS 88 PBS H242 2H24 H 0 0 N N N 41.219 39.687 18.464 -6.656 -8.197 -0.437 H242 PBS 89 PBS H251 1H25 H 0 0 N N N 38.938 38.927 17.756 -6.675 -9.203 1.830 H251 PBS 90 PBS H252 2H25 H 0 0 N N N 39.220 40.589 16.999 -8.146 -8.281 2.226 H252 PBS 91 PBS H253 3H25 H 0 0 N N N 39.358 39.247 15.984 -8.196 -9.540 0.968 H253 PBS 92 PBS H1A 1H H 0 1 N N N 46.247 44.113 9.596 -3.339 2.460 -2.478 H1A PBS 93 PBS H2A 2H H 0 1 N N N 46.307 44.851 11.094 -4.502 1.250 -1.885 H2A PBS 94 PBS HG1 HG1 H 0 1 N N N 48.680 44.577 9.591 -4.597 3.977 -1.539 HG1 PBS 95 PBS HG HG H 0 1 N N N 48.531 43.730 13.253 -5.174 1.258 0.517 HG PBS 96 PBS HG51 1HG5 H 0 0 N N N 50.690 45.379 14.373 -7.412 0.373 1.238 HG51 PBS 97 PBS HG52 2HG5 H 0 0 N N N 49.872 46.441 13.348 -8.189 1.570 0.174 HG52 PBS 98 PBS HG6 HG6 H 0 1 N N N 48.799 46.297 15.443 -7.916 -0.470 -0.833 HG6 PBS 99 PBS HG4 HG4 H 0 1 N N N 50.628 42.778 13.796 -6.283 2.061 2.593 HG4 PBS 100 PBS HG5 HG5 H 0 1 N N N 52.531 43.451 12.610 -7.408 4.053 2.453 HG5 PBS 101 PBS HG3 HG3 H 0 1 N N N 49.514 41.728 11.904 -4.081 2.972 2.038 HG3 PBS 102 PBS H4 H4 H 0 1 N N N 51.427 40.900 10.822 -4.323 5.033 3.011 H4 PBS 103 PBS HG2 HG2 H 0 1 N N N 50.964 43.650 10.000 -5.598 5.093 0.448 HG2 PBS 104 PBS H5 H5 H 0 1 N N N 50.435 41.521 9.246 -3.462 5.594 -0.217 H5 PBS 105 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBS C17 C16 SING N N 1 PBS C17 H171 SING N N 2 PBS C17 H172 SING N N 3 PBS C17 H173 SING N N 4 PBS C16 C15 SING N N 5 PBS C16 H161 SING N N 6 PBS C16 H162 SING N N 7 PBS C15 C14 SING N N 8 PBS C15 H151 SING N N 9 PBS C15 H152 SING N N 10 PBS C14 C13 SING N N 11 PBS C14 H141 SING N N 12 PBS C14 H142 SING N N 13 PBS C13 C12 SING N N 14 PBS C13 H131 SING N N 15 PBS C13 H132 SING N N 16 PBS C12 C11 SING N N 17 PBS C12 H121 SING N N 18 PBS C12 H122 SING N N 19 PBS C11 C10 SING N N 20 PBS C11 H111 SING N N 21 PBS C11 H112 SING N N 22 PBS C10 C9 SING N N 23 PBS C10 H101 SING N N 24 PBS C10 H102 SING N N 25 PBS C9 C8 SING N N 26 PBS C9 H91 SING N N 27 PBS C9 H92 SING N N 28 PBS C8 C7 SING N N 29 PBS C8 H81 SING N N 30 PBS C8 H82 SING N N 31 PBS C7 C6 SING N N 32 PBS C7 H71 SING N N 33 PBS C7 H72 SING N N 34 PBS C6 C5 SING N N 35 PBS C6 H61 SING N N 36 PBS C6 H62 SING N N 37 PBS C5 C4 SING N N 38 PBS C5 H51 SING N N 39 PBS C5 H52 SING N N 40 PBS C4 C3 SING N N 41 PBS C4 H41 SING N N 42 PBS C4 H42 SING N N 43 PBS C3 O32 SING N N 44 PBS C3 C2 SING N N 45 PBS C3 H3 SING N N 46 PBS O32 H32 SING N N 47 PBS C2 O1 SING N N 48 PBS C2 C1 SING N N 49 PBS C2 H2 SING N N 50 PBS O1 HO1 SING N N 51 PBS C1 N SING N N 52 PBS C1 C SING N N 53 PBS C1 H1 SING N N 54 PBS N C18 SING N N 55 PBS N HN SING N N 56 PBS C18 O2 DOUB N N 57 PBS C18 C19 SING N N 58 PBS C19 C20 SING N N 59 PBS C19 H191 SING N N 60 PBS C19 H192 SING N N 61 PBS C20 C21 SING N N 62 PBS C20 H201 SING N N 63 PBS C20 H202 SING N N 64 PBS C21 C22 SING N N 65 PBS C21 H211 SING N N 66 PBS C21 H212 SING N N 67 PBS C22 C23 SING N N 68 PBS C22 H221 SING N N 69 PBS C22 H222 SING N N 70 PBS C23 C24 SING N N 71 PBS C23 H231 SING N N 72 PBS C23 H232 SING N N 73 PBS C24 C25 SING N N 74 PBS C24 H241 SING N N 75 PBS C24 H242 SING N N 76 PBS C25 H251 SING N N 77 PBS C25 H252 SING N N 78 PBS C25 H253 SING N N 79 PBS C OC1 SING N N 80 PBS C H1A SING N N 81 PBS C H2A SING N N 82 PBS OC1 CG1 SING N N 83 PBS CG1 OG SING N N 84 PBS CG1 CG2 SING N N 85 PBS CG1 HG1 SING N N 86 PBS OG CG SING N N 87 PBS CG CG5 SING N N 88 PBS CG CG4 SING N N 89 PBS CG HG SING N N 90 PBS CG5 OG6 SING N N 91 PBS CG5 HG51 SING N N 92 PBS CG5 HG52 SING N N 93 PBS OG6 HG6 SING N N 94 PBS CG4 OG5 SING N N 95 PBS CG4 CG3 SING N N 96 PBS CG4 HG4 SING N N 97 PBS OG5 HG5 SING N N 98 PBS CG3 OG4 SING N N 99 PBS CG3 CG2 SING N N 100 PBS CG3 HG3 SING N N 101 PBS OG4 H4 SING N N 102 PBS CG2 OG3 SING N N 103 PBS CG2 HG2 SING N N 104 PBS OG3 H5 SING N N 105 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBS SMILES ACDLabs 10.04 "O=C(NC(COC1OC(C(O)C(O)C1O)CO)C(O)C(O)CCCCCCCCCCCCCC)CCCCCCC" PBS SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@H](CO[C@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCC" PBS SMILES CACTVS 3.341 "CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O)NC(=O)CCCCCCC" PBS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCC[C@H]([C@H]([C@H](CO[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCC)O)O" PBS SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCCC(C(C(COC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCC)O)O" PBS InChI InChI 1.03 "InChI=1S/C32H63NO9/c1-3-5-7-9-10-11-12-13-14-15-17-18-20-25(35)28(37)24(33-27(36)21-19-16-8-6-4-2)23-41-32-31(40)30(39)29(38)26(22-34)42-32/h24-26,28-32,34-35,37-40H,3-23H2,1-2H3,(H,33,36)/t24-,25+,26+,28-,29-,30-,31+,32-/m0/s1" PBS InChIKey InChI 1.03 PFXOKSFCNLTBGK-YFWOXBOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PBS "SYSTEMATIC NAME" ACDLabs 10.04 "N-{(1S,2S,3R)-1-[(alpha-D-galactopyranosyloxy)methyl]-2,3-dihydroxyheptadecyl}octanamide" PBS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3S,4R)-3,4-dihydroxy-1-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-octadecan-2-yl]octanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBS "Create component" 2005-04-11 RCSB PBS "Modify descriptor" 2011-06-04 RCSB #