data_PBU # _chem_comp.id PBU _chem_comp.name ;(2R)-3-{[(R)-HYDROXY{[(1R,2R,3S,4R,5R,6S)-2,3,6-TRIHYDROXY-4,5-BIS(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}PROPANE-1 ,2-DIYL DIBUTANOATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H33 O19 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "di-butanoyl L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate; di-C4-PIP2" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-05-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 634.354 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PBU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2H3Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBU P1 P1 P 0 1 N N N -6.394 -22.639 -14.306 0.875 -0.446 -1.439 P1 PBU 1 PBU P4 P4 P 0 1 N N N -14.636 -20.818 -16.724 -7.000 1.375 0.331 P4 PBU 2 PBU P5 P5 P 0 1 N N N -11.512 -22.143 -19.400 -5.376 -2.596 0.993 P5 PBU 3 PBU "C3'" "C3'" C 0 1 N N N -4.922 -21.949 -16.219 3.513 -0.811 -1.225 "C3'" PBU 4 PBU "C2'" "C2'" C 0 1 N N R -4.550 -20.502 -15.813 4.683 -0.389 -0.334 "C2'" PBU 5 PBU "O2'" "O2'" O 0 1 N N N -4.267 -19.762 -16.989 4.888 1.044 -0.449 "O2'" PBU 6 PBU "C1'" "C1'" C 0 1 N N N -3.314 -20.460 -14.882 5.951 -1.122 -0.776 "C1'" PBU 7 PBU "O1'" "O1'" O 0 1 N N N -2.455 -21.535 -15.202 7.034 -0.814 0.140 "O1'" PBU 8 PBU C1 C1 C 0 1 N N R -8.959 -21.729 -15.400 -1.664 0.150 -0.856 C1 PBU 9 PBU O1 O1 O 0 1 N N N -7.638 -22.510 -15.414 -0.271 0.261 -0.556 O1 PBU 10 PBU C2 C2 C 0 1 N N R -10.044 -22.261 -14.403 -2.243 1.542 -1.114 C2 PBU 11 PBU O2 O2 O 0 1 N N N -10.362 -23.635 -14.605 -2.070 2.353 0.049 O2 PBU 12 PBU C3 C3 C 0 1 N N S -11.338 -21.423 -14.509 -3.735 1.422 -1.435 C3 PBU 13 PBU O3 O3 O 0 1 N N N -12.287 -21.963 -13.579 -4.276 2.723 -1.676 O3 PBU 14 PBU C4 C4 C 0 1 N N R -11.896 -21.414 -15.984 -4.461 0.779 -0.252 C4 PBU 15 PBU O4 O4 O 0 1 N N N -13.136 -20.541 -16.051 -5.854 0.667 -0.552 O4 PBU 16 PBU C5 C5 C 0 1 N N R -10.770 -20.866 -16.949 -3.882 -0.613 0.006 C5 PBU 17 PBU O5 O5 O 0 1 N N N -11.268 -20.916 -18.326 -4.560 -1.214 1.111 O5 PBU 18 PBU C6 C6 C 0 1 N N S -9.458 -21.683 -16.857 -2.390 -0.494 0.327 C6 PBU 19 PBU O6 O6 O 0 1 N N N -8.403 -21.112 -17.645 -1.849 -1.794 0.568 O6 PBU 20 PBU C7 C7 C 0 1 N N N -5.359 -19.162 -17.663 5.384 1.677 0.625 C7 PBU 21 PBU O7 O7 O 0 1 N N N -5.709 -19.569 -18.749 5.639 1.055 1.629 O7 PBU 22 PBU C8 C8 C 0 1 N N N -6.117 -17.998 -17.002 5.622 3.164 0.580 C8 PBU 23 PBU C9 C9 C 0 1 N N N -6.477 -16.932 -18.054 6.187 3.632 1.923 C9 PBU 24 PBU C10 C10 C 0 1 N N N -7.339 -15.837 -17.400 6.429 5.141 1.877 C10 PBU 25 PBU C11 C11 C 0 1 N N N -1.797 -22.287 -14.208 8.224 -1.382 -0.109 C11 PBU 26 PBU O11 O11 O 0 1 N N N -1.887 -22.078 -13.013 8.357 -2.113 -1.061 O11 PBU 27 PBU C12 C12 C 0 1 N N N -0.863 -23.413 -14.732 9.395 -1.108 0.800 C12 PBU 28 PBU C13 C13 C 0 1 N N N -1.599 -24.729 -15.031 10.621 -1.871 0.296 C13 PBU 29 PBU C14 C14 C 0 1 N N N -0.791 -25.942 -14.535 11.810 -1.593 1.219 C14 PBU 30 PBU O41 O41 O 0 1 N N N -15.503 -20.323 -15.569 -6.858 0.963 1.745 O41 PBU 31 PBU O42 O42 O 0 1 N N N -14.689 -19.958 -17.958 -6.852 2.974 0.220 O42 PBU 32 PBU O43 O43 O 0 1 N N N -14.783 -22.290 -17.071 -8.448 0.930 -0.215 O43 PBU 33 PBU O51 O51 O 0 1 N N N -12.883 -21.771 -19.930 -6.384 -2.483 -0.085 O51 PBU 34 PBU O52 O52 O 0 1 N N N -10.333 -22.017 -20.351 -4.357 -3.794 0.650 O52 PBU 35 PBU O53 O53 O 0 1 N N N -11.497 -23.375 -18.526 -6.116 -2.905 2.389 O53 PBU 36 PBU OP1 OP1 O 0 1 N N N -5.120 -22.771 -15.088 2.307 -0.217 -0.740 OP1 PBU 37 PBU OP2 OP2 O 0 1 N N N -6.501 -21.332 -13.517 0.599 -1.897 -1.534 OP2 PBU 38 PBU OP3 OP3 O 0 1 N N N -6.692 -23.917 -13.567 0.889 0.196 -2.915 OP3 PBU 39 PBU "H3'1" "H3'1" H 0 0 N N N -5.849 -21.927 -16.811 3.697 -0.479 -2.247 "H3'1" PBU 40 PBU "H3'2" "H3'2" H 0 0 N N N -4.108 -22.369 -16.828 3.416 -1.897 -1.207 "H3'2" PBU 41 PBU "H2'" "H2'" H 0 1 N N N -5.404 -20.059 -15.280 4.461 -0.642 0.702 "H2'" PBU 42 PBU "H1'1" "H1'1" H 0 0 N N N -2.780 -19.508 -15.022 5.769 -2.197 -0.775 "H1'1" PBU 43 PBU "H1'2" "H1'2" H 0 0 N N N -3.639 -20.548 -13.835 6.224 -0.802 -1.782 "H1'2" PBU 44 PBU H1 H1 H 0 1 N N N -8.727 -20.696 -15.101 -1.796 -0.469 -1.743 H1 PBU 45 PBU H2 H2 H 0 1 N N N -9.646 -22.130 -13.386 -1.726 2.000 -1.957 H2 PBU 46 PBU H02 H02 H 0 1 N N N -11.022 -23.904 -13.976 -2.415 3.252 -0.043 H02 PBU 47 PBU H3 H3 H 0 1 N N N -11.099 -20.385 -14.233 -3.867 0.803 -2.322 H3 PBU 48 PBU H03 H03 H 0 1 N N N -13.094 -21.464 -13.624 -3.862 3.190 -2.414 H03 PBU 49 PBU H4 H4 H 0 1 N N N -12.149 -22.443 -16.278 -4.329 1.398 0.636 H4 PBU 50 PBU H5 H5 H 0 1 N N N -10.555 -19.824 -16.670 -4.014 -1.232 -0.881 H5 PBU 51 PBU H6 H6 H 0 1 N N N -9.663 -22.711 -17.190 -2.258 0.125 1.215 H6 PBU 52 PBU H06 H06 H 0 1 N N N -8.675 -21.067 -18.554 -0.905 -1.794 0.778 H06 PBU 53 PBU H81 H81 H 0 1 N N N -7.040 -18.380 -16.542 6.334 3.394 -0.213 H81 PBU 54 PBU H82 H82 H 0 1 N N N -5.482 -17.544 -16.227 4.681 3.677 0.383 H82 PBU 55 PBU H91 H91 H 0 1 N N N -5.555 -16.484 -18.452 5.475 3.402 2.716 H91 PBU 56 PBU H92 H92 H 0 1 N N N -7.040 -17.401 -18.874 7.128 3.118 2.119 H92 PBU 57 PBU H11 H11 H 0 1 N N N -7.597 -15.075 -18.151 7.141 5.371 1.084 H11 PBU 58 PBU H12 H12 H 0 1 N N N -8.261 -16.285 -17.002 5.488 5.655 1.680 H12 PBU 59 PBU H13 H13 H 0 1 N N N -6.775 -15.368 -16.580 6.831 5.474 2.833 H13 PBU 60 PBU H121 H121 H 0 0 N N N -0.383 -23.064 -15.658 9.609 -0.039 0.804 H121 PBU 61 PBU H122 H122 H 0 0 N N N -0.093 -23.609 -13.971 9.154 -1.434 1.812 H122 PBU 62 PBU H131 H131 H 0 0 N N N -2.576 -24.717 -14.525 10.407 -2.940 0.292 H131 PBU 63 PBU H132 H132 H 0 0 N N N -1.749 -24.818 -16.117 10.862 -1.545 -0.715 H132 PBU 64 PBU H141 H141 H 0 0 N N N -1.341 -26.867 -14.762 11.569 -1.919 2.230 H141 PBU 65 PBU H142 H142 H 0 0 N N N 0.186 -25.963 -15.040 12.684 -2.137 0.860 H142 PBU 66 PBU H143 H143 H 0 0 N N N -0.640 -25.862 -13.448 12.024 -0.524 1.223 H143 PBU 67 PBU H42 H42 H 0 1 N N N -15.274 -19.224 -17.808 -6.934 3.315 -0.682 H42 PBU 68 PBU H43 H43 H 0 1 N N N -15.419 -22.691 -16.490 -9.188 1.320 0.271 H43 PBU 69 PBU H52 H52 H 0 1 N N N -10.638 -21.704 -21.195 -3.667 -3.926 1.314 H52 PBU 70 PBU H53 H53 H 0 1 N N N -12.378 -23.722 -18.452 -6.628 -3.725 2.390 H53 PBU 71 PBU HP3 HP3 H 0 1 N N N -6.916 -23.717 -12.666 1.064 1.147 -2.928 HP3 PBU 72 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBU P1 O1 SING N N 1 PBU P1 OP1 SING N N 2 PBU P1 OP2 DOUB N N 3 PBU P1 OP3 SING N N 4 PBU P4 O4 SING N N 5 PBU P4 O41 DOUB N N 6 PBU P4 O42 SING N N 7 PBU P4 O43 SING N N 8 PBU P5 O5 SING N N 9 PBU P5 O51 DOUB N N 10 PBU P5 O52 SING N N 11 PBU P5 O53 SING N N 12 PBU "C3'" "C2'" SING N N 13 PBU "C3'" OP1 SING N N 14 PBU "C3'" "H3'1" SING N N 15 PBU "C3'" "H3'2" SING N N 16 PBU "C2'" "O2'" SING N N 17 PBU "C2'" "C1'" SING N N 18 PBU "C2'" "H2'" SING N N 19 PBU "O2'" C7 SING N N 20 PBU "C1'" "O1'" SING N N 21 PBU "C1'" "H1'1" SING N N 22 PBU "C1'" "H1'2" SING N N 23 PBU "O1'" C11 SING N N 24 PBU C1 O1 SING N N 25 PBU C1 C2 SING N N 26 PBU C1 C6 SING N N 27 PBU C1 H1 SING N N 28 PBU C2 O2 SING N N 29 PBU C2 C3 SING N N 30 PBU C2 H2 SING N N 31 PBU O2 H02 SING N N 32 PBU C3 O3 SING N N 33 PBU C3 C4 SING N N 34 PBU C3 H3 SING N N 35 PBU O3 H03 SING N N 36 PBU C4 O4 SING N N 37 PBU C4 C5 SING N N 38 PBU C4 H4 SING N N 39 PBU C5 O5 SING N N 40 PBU C5 C6 SING N N 41 PBU C5 H5 SING N N 42 PBU C6 O6 SING N N 43 PBU C6 H6 SING N N 44 PBU O6 H06 SING N N 45 PBU C7 O7 DOUB N N 46 PBU C7 C8 SING N N 47 PBU C8 C9 SING N N 48 PBU C8 H81 SING N N 49 PBU C8 H82 SING N N 50 PBU C9 C10 SING N N 51 PBU C9 H91 SING N N 52 PBU C9 H92 SING N N 53 PBU C10 H11 SING N N 54 PBU C10 H12 SING N N 55 PBU C10 H13 SING N N 56 PBU C11 O11 DOUB N N 57 PBU C11 C12 SING N N 58 PBU C12 C13 SING N N 59 PBU C12 H121 SING N N 60 PBU C12 H122 SING N N 61 PBU C13 C14 SING N N 62 PBU C13 H131 SING N N 63 PBU C13 H132 SING N N 64 PBU C14 H141 SING N N 65 PBU C14 H142 SING N N 66 PBU C14 H143 SING N N 67 PBU O42 H42 SING N N 68 PBU O43 H43 SING N N 69 PBU O52 H52 SING N N 70 PBU O53 H53 SING N N 71 PBU OP3 HP3 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBU SMILES ACDLabs 12.01 "O=C(OCC(OC(=O)CCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(OP(=O)(O)O)C1O)CCC" PBU InChI InChI 1.03 "InChI=1S/C17H33O19P3/c1-3-5-10(18)31-7-9(33-11(19)6-4-2)8-32-39(29,30)36-15-12(20)13(21)16(34-37(23,24)25)17(14(15)22)35-38(26,27)28/h9,12-17,20-22H,3-8H2,1-2H3,(H,29,30)(H2,23,24,25)(H2,26,27,28)/t9-,12-,13+,14+,15-,16-,17-/m1/s1" PBU InChIKey InChI 1.03 DHAFWWKSHUBGAH-BXJBXBQISA-N PBU SMILES_CANONICAL CACTVS 3.385 "CCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O)OC(=O)CCC" PBU SMILES CACTVS 3.385 "CCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O)OC(=O)CCC" PBU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OC[C@H](COP(=O)(O)O[C@@H]1[C@@H]([C@@H]([C@H]([C@@H]([C@H]1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC" PBU SMILES "OpenEye OEToolkits" 1.7.6 "CCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)OP(=O)(O)O)OP(=O)(O)O)O)O)OC(=O)CCC" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PBU "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(S)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dibutanoate" PBU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R)-2-butanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] butanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBU "Create component" 2006-05-25 RCSB PBU "Modify descriptor" 2011-06-04 RCSB PBU "Modify synonyms" 2014-01-17 RCSB PBU "Modify synonyms" 2014-01-21 RCSB PBU "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PBU "di-butanoyl L-alpha-phosphatidyl-D-myo-inositol 4,5-bisphosphate" ? ? 2 PBU di-C4-PIP2 ? ? ##