data_PBW # _chem_comp.id PBW _chem_comp.name "(1~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H14 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.182 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PBW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YQC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PBW "O4'" O1 O 0 1 N N N N N N 11.331 11.460 14.876 -0.308 -2.729 -0.196 O1 PBW 1 PBW O7 O2 O 0 1 N N N N N N 10.042 9.646 10.509 -1.788 1.871 -0.159 O7 PBW 2 PBW "C1'" C1 C 0 1 N N R N N N 10.781 11.966 10.627 0.582 1.409 -0.245 "C1'" PBW 3 PBW "C2'" C2 C 0 1 N N N N N N 11.186 13.119 11.561 1.663 0.440 0.241 "C2'" PBW 4 PBW "O2'" O3 O 0 1 N N N N N N 12.043 14.067 10.859 2.934 0.854 -0.263 "O2'" PBW 5 PBW "C3'" C3 C 0 1 N N S N N N 11.856 12.651 12.873 1.348 -0.970 -0.264 "C3'" PBW 6 PBW "O3'" O4 O 0 1 N N N N N N 12.154 13.768 13.713 2.357 -1.874 0.189 "O3'" PBW 7 PBW "C4'" C4 C 0 1 N N R N N N 10.887 11.708 13.547 -0.014 -1.412 0.275 "C4'" PBW 8 PBW "C5'" C5 C 0 1 N N N N N N 10.768 10.472 12.680 -1.094 -0.444 -0.210 "C5'" PBW 9 PBW "O6'" O5 O 0 1 N N N N N N 8.698 9.696 13.814 -3.479 -0.052 -0.217 "O6'" PBW 10 PBW "C6'" C6 C 0 1 N N N N N N 10.016 9.318 13.410 -2.456 -0.886 0.329 "C6'" PBW 11 PBW "C7'" C7 C 0 1 N N S N N N 10.098 10.829 11.365 -0.779 0.966 0.295 "C7'" PBW 12 PBW H1 H1 H 0 1 N N N N N N 11.379 12.280 15.353 0.337 -3.397 0.074 H1 PBW 13 PBW HO7 H2 H 0 1 N N N N N N 9.614 8.937 10.975 -1.653 2.785 0.125 HO7 PBW 14 PBW "H1'1" H3 H 0 0 N N N N N N 11.656 11.598 10.072 0.558 1.410 -1.334 "H1'1" PBW 15 PBW "H2'" H5 H 0 1 N N N N N N 10.261 13.643 11.844 1.686 0.439 1.330 "H2'" PBW 16 PBW "HO2'" H6 H 0 0 N N N N N N 12.285 14.772 11.448 3.668 0.284 0.005 "HO2'" PBW 17 PBW "H3'" H7 H 0 1 N N N N N N 12.777 12.104 12.623 1.324 -0.968 -1.354 "H3'" PBW 18 PBW "HO3'" H8 H 0 0 N N N N N N 12.565 13.462 14.513 3.248 -1.655 -0.116 "HO3'" PBW 19 PBW "H4'" H9 H 0 1 N N N N N N 9.902 12.197 13.580 0.010 -1.413 1.365 "H4'" PBW 20 PBW "H5'" H10 H 0 1 N N N N N N 11.784 10.115 12.457 -1.118 -0.442 -1.300 "H5'" PBW 21 PBW "HO6'" H11 H 0 0 N N N N N N 8.279 8.965 14.253 -4.371 -0.275 0.082 "HO6'" PBW 22 PBW "H6'2" H12 H 0 0 N N N N N N 9.943 8.457 12.729 -2.641 -1.922 0.044 "H6'2" PBW 23 PBW "H6'1" H13 H 0 0 N N N N N N 10.591 9.031 14.303 -2.461 -0.803 1.416 "H6'1" PBW 24 PBW "H7'" H14 H 0 1 N N N N N N 9.069 11.146 11.589 -0.756 0.965 1.385 "H7'" PBW 25 PBW "O1'" O6 O 0 1 N Y N N N N 9.791 12.506 9.767 0.876 2.725 0.227 O2 PBW 26 PBW H2 H15 H 0 1 N N N N N N 10.160 13.229 9.273 1.727 3.071 -0.077 H2 PBW 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PBW O7 "C7'" SING N N 1 PBW "C1'" "C7'" SING N N 2 PBW "C1'" "C2'" SING N N 3 PBW "O2'" "C2'" SING N N 4 PBW "C7'" "C5'" SING N N 5 PBW "C2'" "C3'" SING N N 6 PBW "C5'" "C6'" SING N N 7 PBW "C5'" "C4'" SING N N 8 PBW "C3'" "C4'" SING N N 9 PBW "C3'" "O3'" SING N N 10 PBW "C6'" "O6'" SING N N 11 PBW "C4'" "O4'" SING N N 12 PBW "O4'" H1 SING N N 13 PBW O7 HO7 SING N N 14 PBW "C1'" "H1'1" SING N N 15 PBW "C2'" "H2'" SING N N 16 PBW "O2'" "HO2'" SING N N 17 PBW "C3'" "H3'" SING N N 18 PBW "O3'" "HO3'" SING N N 19 PBW "C4'" "H4'" SING N N 20 PBW "C5'" "H5'" SING N N 21 PBW "O6'" "HO6'" SING N N 22 PBW "C6'" "H6'2" SING N N 23 PBW "C6'" "H6'1" SING N N 24 PBW "C7'" "H7'" SING N N 25 PBW "C1'" "O1'" SING N N 26 PBW "O1'" H2 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PBW InChI InChI 1.03 "InChI=1S/C7H14O6/c8-1-2-3(9)5(11)7(13)6(12)4(2)10/h2-13H,1H2/t2-,3-,4+,5+,6-,7-" PBW InChIKey InChI 1.03 QFYQIWDMMSKNFF-VQPJZGIOSA-N PBW SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1O" PBW SMILES CACTVS 3.385 "OC[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O" PBW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C1[C@H]([C@@H](C(C([C@H]1O)O)O)O)O)O" PBW SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1O)O)O)O)O)O" # _pdbx_chem_comp_identifier.comp_id PBW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PBW "Create component" 2020-04-20 PDBE PBW "Initial release" 2021-04-28 RCSB PBW "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PBW _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom "C1'" _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OD2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #