data_PC5 # _chem_comp.id PC5 _chem_comp.name 1,2-DI-N-PENTANOYL-SN-GLYCERO-3-DITHIOPHOSPHOCHOLINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H36 N O6 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-05-02 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.585 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1P6E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PC5 C14 C14 C 0 1 N N N 41.513 21.340 -4.809 9.612 -1.449 0.602 C14 PC5 1 PC5 C13 C13 C 0 1 N N N 41.131 22.698 -4.146 8.360 -0.604 0.846 C13 PC5 2 PC5 C12 C12 C 0 1 N N N 40.562 22.552 -2.715 7.124 -1.379 0.385 C12 PC5 3 PC5 C11 C11 C 0 1 N N N 41.353 23.527 -1.828 5.872 -0.533 0.629 C11 PC5 4 PC5 C10 C10 C 0 1 N N N 41.045 23.692 -0.322 4.654 -1.297 0.175 C10 PC5 5 PC5 O7 O7 O 0 1 N N N 41.835 24.419 0.323 4.775 -2.403 -0.295 O7 PC5 6 PC5 O6 O6 O 0 1 N N N 39.894 23.026 0.409 3.435 -0.747 0.293 O6 PC5 7 PC5 C9 C9 C 0 1 N N N 39.542 22.912 1.849 2.308 -1.540 -0.164 C9 PC5 8 PC5 C8 C8 C 0 1 N N R 39.215 24.207 2.618 1.013 -0.754 0.049 C8 PC5 9 PC5 O5 O5 O 0 1 N N N 38.014 24.740 1.990 1.019 0.428 -0.794 O5 PC5 10 PC5 C15 C15 C 0 1 N N N 37.904 25.829 0.980 1.543 1.547 -0.271 C15 PC5 11 PC5 O8 O8 O 0 1 N N N 38.727 26.776 1.014 1.983 1.539 0.854 O8 PC5 12 PC5 C16 C16 C 0 1 N N N 36.515 26.038 0.294 1.584 2.813 -1.088 C16 PC5 13 PC5 C17 C17 C 0 1 N N N 36.454 25.997 -1.246 2.227 3.931 -0.264 C17 PC5 14 PC5 C18 C18 C 0 1 N N N 36.744 24.575 -1.791 2.268 5.216 -1.093 C18 PC5 15 PC5 C19 C19 C 0 1 N N N 37.063 24.579 -3.308 2.911 6.334 -0.269 C19 PC5 16 PC5 C7 C7 C 0 1 N N N 39.026 24.242 4.178 -0.184 -1.635 -0.316 C7 PC5 17 PC5 O1 O1 O 0 1 N N N 39.448 23.155 5.069 -1.396 -0.944 -0.007 O1 PC5 18 PC5 P1 P1 P 0 1 N N N 40.910 22.950 5.830 -2.855 -1.576 -0.263 P1 PC5 19 PC5 S2 S2 S -1 1 N N N 41.992 24.375 6.102 -3.268 -1.526 -2.210 S2 PC5 20 PC5 S3 S3 S 0 1 N N N 40.756 21.903 7.460 -2.882 -3.463 0.374 S3 PC5 21 PC5 O4 O4 O 0 1 N N N 41.475 21.936 4.634 -3.957 -0.722 0.542 O4 PC5 22 PC5 C5 C5 C 0 1 N N N 42.779 21.937 3.929 -5.360 -0.823 0.285 C5 PC5 23 PC5 C4 C4 C 0 1 N N N 43.203 20.588 3.240 -6.119 0.119 1.222 C4 PC5 24 PC5 N1 N1 N 1 1 N N N 42.416 19.837 2.087 -5.793 1.511 0.885 N1 PC5 25 PC5 C1 C1 C 0 1 N N N 43.123 18.548 1.716 -6.059 1.745 -0.541 C1 PC5 26 PC5 C2 C2 C 0 1 N N N 40.995 19.393 2.445 -6.621 2.417 1.692 C2 PC5 27 PC5 C3 C3 C 0 1 N N N 42.461 20.587 0.759 -4.374 1.764 1.166 C3 PC5 28 PC5 H141 1H14 H 0 0 N N N 41.923 21.445 -5.840 10.493 -0.897 0.930 H141 PC5 29 PC5 H142 2H14 H 0 0 N N N 42.219 20.770 -4.160 9.537 -2.380 1.164 H142 PC5 30 PC5 H143 3H14 H 0 0 N N N 40.645 20.639 -4.799 9.698 -1.672 -0.461 H143 PC5 31 PC5 H131 1H13 H 0 0 N N N 41.998 23.398 -4.155 8.274 -0.380 1.909 H131 PC5 32 PC5 H132 2H13 H 0 0 N N N 40.424 23.267 -4.794 8.436 0.327 0.284 H132 PC5 33 PC5 H121 1H12 H 0 0 N N N 39.458 22.702 -2.661 7.210 -1.602 -0.678 H121 PC5 34 PC5 H122 2H12 H 0 0 N N N 40.577 21.502 -2.339 7.049 -2.310 0.947 H122 PC5 35 PC5 H111 1H11 H 0 0 N N N 42.435 23.278 -1.929 5.786 -0.310 1.692 H111 PC5 36 PC5 H112 2H11 H 0 0 N N N 41.300 24.536 -2.299 5.947 0.398 0.067 H112 PC5 37 PC5 H91 1H9 H 0 1 N N N 38.695 22.195 1.962 2.427 -1.763 -1.224 H91 PC5 38 PC5 H92 2H9 H 0 1 N N N 40.354 22.365 2.381 2.266 -2.471 0.401 H92 PC5 39 PC5 H8 H8 H 0 1 N N N 40.161 24.790 2.537 0.937 -0.454 1.094 H8 PC5 40 PC5 H161 1H16 H 0 0 N N N 35.788 25.300 0.708 2.171 2.644 -1.991 H161 PC5 41 PC5 H162 2H16 H 0 0 N N N 36.071 26.996 0.651 0.570 3.101 -1.362 H162 PC5 42 PC5 H171 1H17 H 0 0 N N N 35.481 26.388 -1.625 1.640 4.099 0.639 H171 PC5 43 PC5 H172 2H17 H 0 0 N N N 37.134 26.754 -1.700 3.241 3.642 0.010 H172 PC5 44 PC5 H181 1H18 H 0 0 N N N 37.556 24.079 -1.210 2.855 5.047 -1.996 H181 PC5 45 PC5 H182 2H18 H 0 0 N N N 35.907 23.876 -1.557 1.253 5.504 -1.367 H182 PC5 46 PC5 H191 1H19 H 0 0 N N N 37.271 23.556 -3.700 2.940 7.249 -0.859 H191 PC5 47 PC5 H192 2H19 H 0 0 N N N 36.250 25.074 -3.888 2.324 6.502 0.634 H192 PC5 48 PC5 H193 3H19 H 0 0 N N N 37.900 25.277 -3.541 3.925 6.045 0.005 H193 PC5 49 PC5 H71 1H7 H 0 1 N N N 39.505 25.177 4.548 -0.156 -1.862 -1.382 H71 PC5 50 PC5 H72 2H7 H 0 1 N N N 37.945 24.430 4.375 -0.139 -2.563 0.254 H72 PC5 51 PC5 H51 1H5 H 0 1 N N N 42.801 22.763 3.181 -5.560 -0.546 -0.750 H51 PC5 52 PC5 H52 2H5 H 0 1 N N N 43.582 22.271 4.625 -5.688 -1.848 0.457 H52 PC5 53 PC5 H41 1H4 H 0 1 N N N 44.240 20.741 2.862 -7.191 -0.041 1.107 H41 PC5 54 PC5 H42 2H4 H 0 1 N N N 43.338 19.846 4.061 -5.829 -0.082 2.253 H42 PC5 55 PC5 H11 1H1 H 0 1 N N N 42.569 18.019 0.905 -7.112 1.558 -0.750 H11 PC5 56 PC5 H12 2H1 H 0 1 N N N 44.190 18.723 1.444 -5.817 2.779 -0.791 H12 PC5 57 PC5 H13 3H1 H 0 1 N N N 43.283 17.892 2.603 -5.445 1.073 -1.140 H13 PC5 58 PC5 H21 1H2 H 0 1 N N N 40.441 18.864 1.634 -6.424 2.243 2.750 H21 PC5 59 PC5 H22 2H2 H 0 1 N N N 41.010 18.767 3.367 -6.379 3.450 1.442 H22 PC5 60 PC5 H23 3H2 H 0 1 N N N 40.401 20.264 2.808 -7.674 2.230 1.484 H23 PC5 61 PC5 H31 1H3 H 0 1 N N N 41.907 20.058 -0.052 -3.759 1.240 0.434 H31 PC5 62 PC5 H32 2H3 H 0 1 N N N 42.094 21.633 0.877 -4.176 2.834 1.106 H32 PC5 63 PC5 H33 3H3 H 0 1 N N N 43.512 20.797 0.454 -4.132 1.406 2.167 H33 PC5 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PC5 C14 C13 SING N N 1 PC5 C14 H141 SING N N 2 PC5 C14 H142 SING N N 3 PC5 C14 H143 SING N N 4 PC5 C13 C12 SING N N 5 PC5 C13 H131 SING N N 6 PC5 C13 H132 SING N N 7 PC5 C12 C11 SING N N 8 PC5 C12 H121 SING N N 9 PC5 C12 H122 SING N N 10 PC5 C11 C10 SING N N 11 PC5 C11 H111 SING N N 12 PC5 C11 H112 SING N N 13 PC5 C10 O7 DOUB N N 14 PC5 C10 O6 SING N N 15 PC5 O6 C9 SING N N 16 PC5 C9 C8 SING N N 17 PC5 C9 H91 SING N N 18 PC5 C9 H92 SING N N 19 PC5 C8 O5 SING N N 20 PC5 C8 C7 SING N N 21 PC5 C8 H8 SING N N 22 PC5 O5 C15 SING N N 23 PC5 C15 O8 DOUB N N 24 PC5 C15 C16 SING N N 25 PC5 C16 C17 SING N N 26 PC5 C16 H161 SING N N 27 PC5 C16 H162 SING N N 28 PC5 C17 C18 SING N N 29 PC5 C17 H171 SING N N 30 PC5 C17 H172 SING N N 31 PC5 C18 C19 SING N N 32 PC5 C18 H181 SING N N 33 PC5 C18 H182 SING N N 34 PC5 C19 H191 SING N N 35 PC5 C19 H192 SING N N 36 PC5 C19 H193 SING N N 37 PC5 C7 O1 SING N N 38 PC5 C7 H71 SING N N 39 PC5 C7 H72 SING N N 40 PC5 O1 P1 SING N N 41 PC5 P1 S2 SING N N 42 PC5 P1 S3 DOUB N N 43 PC5 P1 O4 SING N N 44 PC5 O4 C5 SING N N 45 PC5 C5 C4 SING N N 46 PC5 C5 H51 SING N N 47 PC5 C5 H52 SING N N 48 PC5 C4 N1 SING N N 49 PC5 C4 H41 SING N N 50 PC5 C4 H42 SING N N 51 PC5 N1 C1 SING N N 52 PC5 N1 C2 SING N N 53 PC5 N1 C3 SING N N 54 PC5 C1 H11 SING N N 55 PC5 C1 H12 SING N N 56 PC5 C1 H13 SING N N 57 PC5 C2 H21 SING N N 58 PC5 C2 H22 SING N N 59 PC5 C2 H23 SING N N 60 PC5 C3 H31 SING N N 61 PC5 C3 H32 SING N N 62 PC5 C3 H33 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PC5 SMILES ACDLabs 10.04 "O=C(OC(COP([S-])(=S)OCC[N+](C)(C)C)COC(=O)CCCC)CCCC" PC5 InChI InChI 1.03 "InChI=1S/C18H36NO6PS2/c1-6-8-10-17(20)22-14-16(25-18(21)11-9-7-2)15-24-26(27,28)23-13-12-19(3,4)5/h16H,6-15H2,1-5H3/t16-/m1/s1" PC5 InChIKey InChI 1.03 WEXRBKRFCBLWEL-MRXNPFEDSA-N PC5 SMILES_CANONICAL CACTVS 3.385 "CCCCC(=O)OC[C@H](CO[P]([S-])(=S)OCC[N+](C)(C)C)OC(=O)CCCC" PC5 SMILES CACTVS 3.385 "CCCCC(=O)OC[CH](CO[P]([S-])(=S)OCC[N+](C)(C)C)OC(=O)CCCC" PC5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CCCCC(=O)OC[C@H](COP(=S)(OCC[N+](C)(C)C)[S-])OC(=O)CCCC" PC5 SMILES "OpenEye OEToolkits" 1.7.5 "CCCCC(=O)OCC(COP(=S)(OCC[N+](C)(C)C)[S-])OC(=O)CCCC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PC5 "SYSTEMATIC NAME" ACDLabs 10.04 "O-[(2R)-2,3-bis(pentanoyloxy)propyl] O-[2-(trimethylammonio)ethyl] dithiophosphate" PC5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(2R)-2,3-di(pentanoyloxy)propoxy]-sulfido-phosphinothioyl]oxyethyl-trimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PC5 "Create component" 2003-05-02 RCSB PC5 "Modify descriptor" 2011-06-04 RCSB PC5 "Modify descriptor" 2012-01-05 RCSB PC5 "Modify coordinates" 2012-01-05 RCSB #