data_PCG # _chem_comp.id PCG _chem_comp.name "CYCLIC GUANOSINE MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.205 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PCG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BE4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PCG PA PA P 0 1 N N R N N N 19.792 82.357 15.685 0.069 0.439 4.367 PA PCG 1 PCG O1A O1A O 0 1 N N N N N N 20.079 83.173 16.893 0.948 0.740 5.682 O1A PCG 2 PCG O2A O2A O 0 1 N N N N N N 20.667 82.805 14.579 -1.083 1.366 4.330 O2A PCG 3 PCG "O5'" O5* O 0 1 N N N N N N 18.460 82.512 15.037 -0.470 -1.072 4.427 "O5'" PCG 4 PCG "C5'" C5* C 0 1 N N N N N N 17.270 81.875 15.508 -1.161 -1.359 3.204 "C5'" PCG 5 PCG "C4'" C4* C 0 1 N N R N N N 17.689 80.972 16.617 -0.181 -1.165 2.062 "C4'" PCG 6 PCG "O4'" O4* O 0 1 N N N N N N 16.757 80.630 17.619 -0.675 -1.474 0.759 "O4'" PCG 7 PCG "C3'" C3* C 0 1 N N S N N N 18.974 80.135 16.722 0.149 0.347 1.958 "C3'" PCG 8 PCG "O3'" O3* O 0 1 N N N N N N 20.020 80.947 16.183 0.981 0.674 3.053 "O3'" PCG 9 PCG "C2'" C2* C 0 1 N N R N N N 18.902 79.921 18.269 0.820 0.410 0.575 "C2'" PCG 10 PCG "O2'" O2* O 0 1 N N N N N N 19.145 81.067 19.087 2.239 0.293 0.698 "O2'" PCG 11 PCG "C1'" C1* C 0 1 N N R N N N 17.375 79.639 18.439 0.218 -0.809 -0.164 "C1'" PCG 12 PCG N9 N9 N 0 1 Y N N N N N 16.911 78.432 17.754 -0.527 -0.360 -1.343 N9 PCG 13 PCG C8 C8 C 0 1 Y N N N N N 16.818 77.952 16.446 -1.849 -0.024 -1.382 C8 PCG 14 PCG N7 N7 N 0 1 Y N N N N N 16.332 76.742 16.412 -2.179 0.328 -2.590 N7 PCG 15 PCG C5 C5 C 0 1 Y N N N N N 16.030 76.436 17.766 -1.092 0.240 -3.395 C5 PCG 16 PCG C6 C6 C 0 1 N N N N N N 15.457 75.237 18.300 -0.861 0.492 -4.768 C6 PCG 17 PCG O6 O6 O 0 1 N N N N N N 15.058 74.211 17.675 -1.762 0.877 -5.493 O6 PCG 18 PCG N1 N1 N 0 1 N N N N N N 15.393 75.373 19.705 0.385 0.299 -5.254 N1 PCG 19 PCG C2 C2 C 0 1 N N N N N N 15.750 76.505 20.466 1.383 -0.137 -4.435 C2 PCG 20 PCG N2 N2 N 0 1 N N N N N N 15.543 76.332 21.796 2.637 -0.330 -4.958 N2 PCG 21 PCG N3 N3 N 0 1 N N N N N N 16.221 77.690 19.980 1.181 -0.374 -3.159 N3 PCG 22 PCG C4 C4 C 0 1 Y N N N N N 16.332 77.525 18.617 -0.024 -0.200 -2.605 C4 PCG 23 PCG HO1A AHO1 H 0 0 N N N N N N 19.517 82.885 17.603 0.366 0.612 6.443 HO1A PCG 24 PCG "H5'1" 1H5* H 0 0 N N N N N N 16.469 82.593 15.800 -2.004 -0.678 3.087 "H5'1" PCG 25 PCG "H5'2" 2H5* H 0 0 N N N N N N 16.699 81.353 14.704 -1.517 -2.390 3.214 "H5'2" PCG 26 PCG "H4'" H4* H 0 1 N N N N N N 18.244 81.921 16.436 0.730 -1.731 2.257 "H4'" PCG 27 PCG "H3'" H3* H 0 1 N N N N N N 19.122 79.170 16.183 -0.767 0.936 1.981 "H3'" PCG 28 PCG "H2'" H2* H 0 1 N N N N N N 19.661 79.164 18.576 0.555 1.334 0.061 "H2'" PCG 29 PCG "HO2'" *HO2 H 0 0 N N N N N N 19.101 80.937 20.027 2.601 0.340 -0.196 "HO2'" PCG 30 PCG "H1'" H1* H 0 1 N N N N N N 17.159 79.591 19.531 1.013 -1.490 -0.466 "H1'" PCG 31 PCG H8 H8 H 0 1 N N N N N N 17.103 78.481 15.521 -2.521 -0.048 -0.537 H8 PCG 32 PCG HN1 HN1 H 0 1 N N N N N N 15.051 74.565 20.226 0.568 0.464 -6.192 HN1 PCG 33 PCG HN21 1HN2 H 0 0 N N N N N N 15.801 77.150 22.346 3.359 -0.636 -4.387 HN21 PCG 34 PCG HN22 2HN2 H 0 0 N N N N N N 16.022 75.498 22.134 2.801 -0.163 -5.900 HN22 PCG 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PCG PA O1A SING N N 1 PCG PA O2A DOUB N N 2 PCG PA "O5'" SING N N 3 PCG PA "O3'" SING N N 4 PCG O1A HO1A SING N N 5 PCG "O5'" "C5'" SING N N 6 PCG "C5'" "C4'" SING N N 7 PCG "C5'" "H5'1" SING N N 8 PCG "C5'" "H5'2" SING N N 9 PCG "C4'" "O4'" SING N N 10 PCG "C4'" "C3'" SING N N 11 PCG "C4'" "H4'" SING N N 12 PCG "O4'" "C1'" SING N N 13 PCG "C3'" "O3'" SING N N 14 PCG "C3'" "C2'" SING N N 15 PCG "C3'" "H3'" SING N N 16 PCG "C2'" "O2'" SING N N 17 PCG "C2'" "C1'" SING N N 18 PCG "C2'" "H2'" SING N N 19 PCG "O2'" "HO2'" SING N N 20 PCG "C1'" N9 SING N N 21 PCG "C1'" "H1'" SING N N 22 PCG N9 C8 SING Y N 23 PCG N9 C4 SING Y N 24 PCG C8 N7 DOUB Y N 25 PCG C8 H8 SING N N 26 PCG N7 C5 SING Y N 27 PCG C5 C6 SING N N 28 PCG C5 C4 DOUB Y N 29 PCG C6 O6 DOUB N N 30 PCG C6 N1 SING N N 31 PCG N1 C2 SING N N 32 PCG N1 HN1 SING N N 33 PCG C2 N2 SING N N 34 PCG C2 N3 DOUB N N 35 PCG N2 HN21 SING N N 36 PCG N2 HN22 SING N N 37 PCG N3 C4 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PCG SMILES ACDLabs 10.04 "O=C4NC(=Nc1c4ncn1C3OC2COP(=O)(OC2C3O)O)N" PCG SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P@](O)(=O)O[C@H]4[C@H]3O" PCG SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]4[CH]3O" PCG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@H]4C(O3)CO[P@](=O)(O4)O)O)N=C(NC2=O)N" PCG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C4C(O3)COP(=O)(O4)O)O)N=C(NC2=O)N" PCG InChI InChI 1.03 "InChI=1S/C10H12N5O7P/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6-3(21-9)1-20-23(18,19)22-6/h2-3,5-6,9,16H,1H2,(H,18,19)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1" PCG InChIKey InChI 1.03 ZOOGRGPOEVQQDX-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PCG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-1,9-dihydro-6H-purin-6-one" PCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-9-[(4R,6S,7R,8R)-4,7-dihydroxy-4-oxo-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-8-yl]-1H-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PCG "Create component" 1999-07-08 RCSB PCG "Modify descriptor" 2011-06-04 RCSB PCG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PCG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type cGMPylation _pdbx_chem_comp_pcm.category "Nucleotide monophosphate" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0677 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #