data_PCG
#
_chem_comp.id PCG
_chem_comp.name "CYCLIC GUANOSINE MONOPHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H12 N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 345.205
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PCG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BE4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PCG PA PA P 0 1 N N R N N N 19.792 82.357 15.685 0.069 0.439 4.367 PA PCG 1
PCG O1A O1A O 0 1 N N N N N N 20.079 83.173 16.893 0.948 0.740 5.682 O1A PCG 2
PCG O2A O2A O 0 1 N N N N N N 20.667 82.805 14.579 -1.083 1.366 4.330 O2A PCG 3
PCG "O5'" O5* O 0 1 N N N N N N 18.460 82.512 15.037 -0.470 -1.072 4.427 "O5'" PCG 4
PCG "C5'" C5* C 0 1 N N N N N N 17.270 81.875 15.508 -1.161 -1.359 3.204 "C5'" PCG 5
PCG "C4'" C4* C 0 1 N N R N N N 17.689 80.972 16.617 -0.181 -1.165 2.062 "C4'" PCG 6
PCG "O4'" O4* O 0 1 N N N N N N 16.757 80.630 17.619 -0.675 -1.474 0.759 "O4'" PCG 7
PCG "C3'" C3* C 0 1 N N S N N N 18.974 80.135 16.722 0.149 0.347 1.958 "C3'" PCG 8
PCG "O3'" O3* O 0 1 N N N N N N 20.020 80.947 16.183 0.981 0.674 3.053 "O3'" PCG 9
PCG "C2'" C2* C 0 1 N N R N N N 18.902 79.921 18.269 0.820 0.410 0.575 "C2'" PCG 10
PCG "O2'" O2* O 0 1 N N N N N N 19.145 81.067 19.087 2.239 0.293 0.698 "O2'" PCG 11
PCG "C1'" C1* C 0 1 N N R N N N 17.375 79.639 18.439 0.218 -0.809 -0.164 "C1'" PCG 12
PCG N9 N9 N 0 1 Y N N N N N 16.911 78.432 17.754 -0.527 -0.360 -1.343 N9 PCG 13
PCG C8 C8 C 0 1 Y N N N N N 16.818 77.952 16.446 -1.849 -0.024 -1.382 C8 PCG 14
PCG N7 N7 N 0 1 Y N N N N N 16.332 76.742 16.412 -2.179 0.328 -2.590 N7 PCG 15
PCG C5 C5 C 0 1 Y N N N N N 16.030 76.436 17.766 -1.092 0.240 -3.395 C5 PCG 16
PCG C6 C6 C 0 1 N N N N N N 15.457 75.237 18.300 -0.861 0.492 -4.768 C6 PCG 17
PCG O6 O6 O 0 1 N N N N N N 15.058 74.211 17.675 -1.762 0.877 -5.493 O6 PCG 18
PCG N1 N1 N 0 1 N N N N N N 15.393 75.373 19.705 0.385 0.299 -5.254 N1 PCG 19
PCG C2 C2 C 0 1 N N N N N N 15.750 76.505 20.466 1.383 -0.137 -4.435 C2 PCG 20
PCG N2 N2 N 0 1 N N N N N N 15.543 76.332 21.796 2.637 -0.330 -4.958 N2 PCG 21
PCG N3 N3 N 0 1 N N N N N N 16.221 77.690 19.980 1.181 -0.374 -3.159 N3 PCG 22
PCG C4 C4 C 0 1 Y N N N N N 16.332 77.525 18.617 -0.024 -0.200 -2.605 C4 PCG 23
PCG HO1A AHO1 H 0 0 N N N N N N 19.517 82.885 17.603 0.366 0.612 6.443 HO1A PCG 24
PCG "H5'1" 1H5* H 0 0 N N N N N N 16.469 82.593 15.800 -2.004 -0.678 3.087 "H5'1" PCG 25
PCG "H5'2" 2H5* H 0 0 N N N N N N 16.699 81.353 14.704 -1.517 -2.390 3.214 "H5'2" PCG 26
PCG "H4'" H4* H 0 1 N N N N N N 18.244 81.921 16.436 0.730 -1.731 2.257 "H4'" PCG 27
PCG "H3'" H3* H 0 1 N N N N N N 19.122 79.170 16.183 -0.767 0.936 1.981 "H3'" PCG 28
PCG "H2'" H2* H 0 1 N N N N N N 19.661 79.164 18.576 0.555 1.334 0.061 "H2'" PCG 29
PCG "HO2'" *HO2 H 0 0 N N N N N N 19.101 80.937 20.027 2.601 0.340 -0.196 "HO2'" PCG 30
PCG "H1'" H1* H 0 1 N N N N N N 17.159 79.591 19.531 1.013 -1.490 -0.466 "H1'" PCG 31
PCG H8 H8 H 0 1 N N N N N N 17.103 78.481 15.521 -2.521 -0.048 -0.537 H8 PCG 32
PCG HN1 HN1 H 0 1 N N N N N N 15.051 74.565 20.226 0.568 0.464 -6.192 HN1 PCG 33
PCG HN21 1HN2 H 0 0 N N N N N N 15.801 77.150 22.346 3.359 -0.636 -4.387 HN21 PCG 34
PCG HN22 2HN2 H 0 0 N N N N N N 16.022 75.498 22.134 2.801 -0.163 -5.900 HN22 PCG 35
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PCG PA O1A SING N N 1
PCG PA O2A DOUB N N 2
PCG PA "O5'" SING N N 3
PCG PA "O3'" SING N N 4
PCG O1A HO1A SING N N 5
PCG "O5'" "C5'" SING N N 6
PCG "C5'" "C4'" SING N N 7
PCG "C5'" "H5'1" SING N N 8
PCG "C5'" "H5'2" SING N N 9
PCG "C4'" "O4'" SING N N 10
PCG "C4'" "C3'" SING N N 11
PCG "C4'" "H4'" SING N N 12
PCG "O4'" "C1'" SING N N 13
PCG "C3'" "O3'" SING N N 14
PCG "C3'" "C2'" SING N N 15
PCG "C3'" "H3'" SING N N 16
PCG "C2'" "O2'" SING N N 17
PCG "C2'" "C1'" SING N N 18
PCG "C2'" "H2'" SING N N 19
PCG "O2'" "HO2'" SING N N 20
PCG "C1'" N9 SING N N 21
PCG "C1'" "H1'" SING N N 22
PCG N9 C8 SING Y N 23
PCG N9 C4 SING Y N 24
PCG C8 N7 DOUB Y N 25
PCG C8 H8 SING N N 26
PCG N7 C5 SING Y N 27
PCG C5 C6 SING N N 28
PCG C5 C4 DOUB Y N 29
PCG C6 O6 DOUB N N 30
PCG C6 N1 SING N N 31
PCG N1 C2 SING N N 32
PCG N1 HN1 SING N N 33
PCG C2 N2 SING N N 34
PCG C2 N3 DOUB N N 35
PCG N2 HN21 SING N N 36
PCG N2 HN22 SING N N 37
PCG N3 C4 SING N N 38
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PCG SMILES ACDLabs 10.04 "O=C4NC(=Nc1c4ncn1C3OC2COP(=O)(OC2C3O)O)N"
PCG SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P@](O)(=O)O[C@H]4[C@H]3O"
PCG SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]4[CH]3O"
PCG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@H]4C(O3)CO[P@](=O)(O4)O)O)N=C(NC2=O)N"
PCG SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C4C(O3)COP(=O)(O4)O)O)N=C(NC2=O)N"
PCG InChI InChI 1.03 "InChI=1S/C10H12N5O7P/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6-3(21-9)1-20-23(18,19)22-6/h2-3,5-6,9,16H,1H2,(H,18,19)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1"
PCG InChIKey InChI 1.03 ZOOGRGPOEVQQDX-UUOKFMHZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PCG "SYSTEMATIC NAME" ACDLabs 10.04 "2-amino-9-[(2R,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]-1,9-dihydro-6H-purin-6-one"
PCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-amino-9-[(4R,6S,7R,8R)-4,7-dihydroxy-4-oxo-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-8-yl]-1H-purin-6-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PCG "Create component" 1999-07-08 RCSB
PCG "Modify descriptor" 2011-06-04 RCSB
PCG "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id PCG
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type cGMPylation
_pdbx_chem_comp_pcm.category "Nucleotide monophosphate"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C8
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0677
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#