data_PCY
#
_chem_comp.id PCY
_chem_comp.name Pactamycin
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H38 N4 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-12-15
_chem_comp.pdbx_modified_date 2014-10-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 558.623
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PCY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HNX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PCY C1 C1 C 0 1 N N N 207.178 105.375 -40.337 4.865 -0.455 -0.808 C1 PCY 1
PCY N2 N2 N 0 1 N N N 206.668 104.221 -39.486 3.890 -0.972 -0.034 N2 PCY 2
PCY C3 C3 C 0 1 N N R 207.133 103.607 -37.982 2.869 -0.094 0.543 C3 PCY 3
PCY N4 N4 N 0 1 N N N 206.392 106.688 -40.473 5.870 -1.241 -1.242 N4 PCY 4
PCY O5 O5 O 0 1 N N N 208.289 105.202 -41.102 4.836 0.721 -1.118 O5 PCY 5
PCY C6 C6 C 0 1 N N S 206.714 102.020 -37.914 3.533 0.997 1.387 C6 PCY 6
PCY C7 C7 C 0 1 N N R 206.609 104.273 -36.600 1.896 -0.916 1.413 C7 PCY 7
PCY C8 C8 C 0 1 N N S 208.820 103.713 -37.924 2.029 0.544 -0.577 C8 PCY 8
PCY C9 C9 C 0 1 N N N 206.148 107.421 -41.921 6.929 -0.679 -2.083 C9 PCY 9
PCY C10 C10 C 0 1 N N N 205.687 107.479 -39.248 5.902 -2.659 -0.874 C10 PCY 10
PCY C11 C11 C 0 1 N N N 207.791 101.157 -38.879 4.085 2.088 0.467 C11 PCY 11
PCY O12 O12 O 0 1 N N N 205.259 101.902 -38.490 4.602 0.428 2.145 O12 PCY 12
PCY C13 C13 C 0 1 N N N 205.027 104.837 -36.776 2.559 -2.213 1.879 C13 PCY 13
PCY O14 O14 O 0 1 N N N 206.708 103.196 -35.434 1.458 -0.148 2.535 O14 PCY 14
PCY C15 C15 C 0 1 N N S 207.673 105.496 -36.318 0.709 -1.224 0.467 C15 PCY 15
PCY N16 N16 N 0 1 N N N 209.659 103.897 -39.302 2.503 0.081 -1.888 N16 PCY 16
PCY C17 C17 C 0 1 N N S 209.124 104.939 -36.872 0.573 0.087 -0.350 C17 PCY 17
PCY C18 C18 C 0 1 N N N 207.588 105.845 -34.660 -0.565 -1.500 1.267 C18 PCY 18
PCY O19 O19 O 0 1 N N N 207.350 106.746 -37.145 1.018 -2.324 -0.392 O19 PCY 19
PCY N20 N20 N 0 1 N N N 210.086 104.369 -35.741 -0.166 1.093 0.418 N20 PCY 20
PCY O21 O21 O 0 1 N N N 209.007 106.036 -34.062 -1.658 -1.785 0.355 O21 PCY 21
PCY C22 C22 C 0 1 Y N N 211.362 105.237 -35.564 -0.787 2.157 -0.242 C22 PCY 22
PCY C23 C23 C 0 1 N N N 209.403 107.257 -33.221 -2.860 -2.051 0.903 C23 PCY 23
PCY C24 C24 C 0 1 Y N N 211.298 106.732 -36.001 -1.486 3.108 0.484 C24 PCY 24
PCY C25 C25 C 0 1 Y N N 212.654 104.641 -34.973 -0.699 2.264 -1.625 C25 PCY 25
PCY O26 O26 O 0 1 N N N 208.591 108.351 -33.041 -2.991 -2.046 2.111 O26 PCY 26
PCY C27 C27 C 0 1 Y N N 210.842 107.182 -32.553 -4.015 -2.350 0.038 C27 PCY 27
PCY C28 C28 C 0 1 Y N N 212.499 107.620 -35.841 -2.106 4.170 -0.181 C28 PCY 28
PCY C29 C29 C 0 1 Y N N 213.879 105.561 -34.823 -1.311 3.314 -2.284 C29 PCY 29
PCY C30 C30 C 0 1 Y N N 211.789 108.384 -32.482 -4.843 -1.317 -0.410 C30 PCY 30
PCY C31 C31 C 0 1 Y N N 211.227 105.808 -31.986 -4.287 -3.671 -0.345 C31 PCY 31
PCY C32 C32 C 0 1 N N N 212.382 109.156 -36.310 -2.850 5.186 0.582 C32 PCY 32
PCY C33 C33 C 0 1 Y N N 213.795 107.051 -35.257 -2.016 4.264 -1.573 C33 PCY 33
PCY C34 C34 C 0 1 N N N 211.354 109.877 -33.112 -4.556 0.108 -0.010 C34 PCY 34
PCY C35 C35 C 0 1 Y N N 213.163 108.205 -31.824 -5.922 -1.603 -1.218 C35 PCY 35
PCY O36 O36 O 0 1 N N N 210.206 104.651 -32.105 -3.488 -4.681 0.079 O36 PCY 36
PCY C37 C37 C 0 1 Y N N 212.601 105.602 -31.326 -5.377 -3.940 -1.159 C37 PCY 37
PCY C38 C38 C 0 1 N N N 213.662 110.019 -36.072 -3.517 6.330 -0.138 C38 PCY 38
PCY O39 O39 O 0 1 N N N 211.153 109.778 -36.926 -2.927 5.102 1.789 O39 PCY 39
PCY C40 C40 C 0 1 Y N N 213.574 106.811 -31.245 -6.190 -2.910 -1.589 C40 PCY 40
PCY H2 H2 H 0 1 N N N 205.904 103.727 -39.900 3.865 -1.926 0.140 H2 PCY 41
PCY H6 H6 H 0 1 N N N 206.766 101.654 -36.878 2.797 1.430 2.064 H6 PCY 42
PCY H8 H8 H 0 1 N N N 209.175 102.787 -37.449 2.093 1.631 -0.519 H8 PCY 43
PCY H91 H91 H 0 1 N N N 205.563 108.341 -41.773 7.736 -0.308 -1.451 H91 PCY 44
PCY H92 H92 H 0 1 N N N 207.119 107.673 -42.373 7.314 -1.452 -2.748 H92 PCY 45
PCY H93 H93 H 0 1 N N N 205.599 106.741 -42.588 6.526 0.142 -2.675 H93 PCY 46
PCY H101 H101 H 0 0 N N N 205.195 108.386 -39.631 5.003 -3.151 -1.245 H101 PCY 47
PCY H102 H102 H 0 0 N N N 204.938 106.828 -38.774 6.781 -3.129 -1.314 H102 PCY 48
PCY H103 H103 H 0 0 N N N 206.449 107.761 -38.507 5.945 -2.751 0.211 H103 PCY 49
PCY H111 H111 H 0 0 N N N 207.533 100.088 -38.852 3.416 2.218 -0.384 H111 PCY 50
PCY H112 H112 H 0 0 N N N 207.729 101.523 -39.915 4.158 3.025 1.018 H112 PCY 51
PCY H113 H113 H 0 0 N N N 208.815 101.297 -38.501 5.073 1.797 0.111 H113 PCY 52
PCY H12 H12 H 0 1 N N N 204.981 100.994 -38.467 5.295 0.023 1.606 H12 PCY 53
PCY H131 H131 H 0 0 N N N 204.689 105.285 -35.830 3.515 -1.983 2.351 H131 PCY 54
PCY H132 H132 H 0 0 N N N 204.995 105.595 -37.572 1.911 -2.715 2.598 H132 PCY 55
PCY H133 H133 H 0 0 N N N 204.366 103.998 -37.041 2.725 -2.865 1.022 H133 PCY 56
PCY H14 H14 H 0 1 N N N 206.402 103.580 -34.621 0.843 -0.616 3.116 H14 PCY 57
PCY H161 H161 H 0 0 N N N 210.636 103.942 -39.094 1.778 0.167 -2.585 H161 PCY 58
PCY H162 H162 H 0 0 N N N 209.482 103.120 -39.906 3.335 0.578 -2.168 H162 PCY 59
PCY H17 H17 H 0 1 N N N 209.633 105.752 -37.411 0.080 -0.105 -1.303 H17 PCY 60
PCY H181 H181 H 0 0 N N N 207.009 106.769 -34.515 -0.405 -2.357 1.921 H181 PCY 61
PCY H182 H182 H 0 0 N N N 207.088 105.014 -34.142 -0.813 -0.625 1.869 H182 PCY 62
PCY H19 H19 H 0 1 N N N 207.985 107.426 -36.954 0.306 -2.557 -1.004 H19 PCY 63
PCY H20 H20 H 0 1 N N N 209.588 104.349 -34.874 -0.224 1.021 1.383 H20 PCY 64
PCY H24 H24 H 0 1 N N N 210.386 107.131 -36.421 -1.552 3.029 1.559 H24 PCY 65
PCY H25 H25 H 0 1 N N N 212.699 103.605 -34.672 -0.150 1.523 -2.188 H25 PCY 66
PCY H29 H29 H 0 1 N N N 214.799 105.170 -34.415 -1.239 3.391 -3.358 H29 PCY 67
PCY H33 H33 H 0 1 N N N 214.658 107.691 -35.146 -2.493 5.083 -2.091 H33 PCY 68
PCY H341 H341 H 0 0 N N N 210.853 110.472 -32.334 -3.894 0.565 -0.745 H341 PCY 69
PCY H342 H342 H 0 0 N N N 212.255 110.407 -33.455 -5.490 0.667 0.036 H342 PCY 70
PCY H343 H343 H 0 0 N N N 210.669 109.731 -33.960 -4.076 0.120 0.969 H343 PCY 71
PCY H35 H35 H 0 1 N N N 213.845 109.040 -31.761 -6.561 -0.804 -1.564 H35 PCY 72
PCY H36 H36 H 0 1 N N N 210.571 103.865 -31.716 -3.765 -5.077 0.917 H36 PCY 73
PCY H37 H37 H 0 1 N N N 212.883 104.639 -30.928 -5.590 -4.956 -1.457 H37 PCY 74
PCY H381 H381 H 0 0 N N N 213.480 111.049 -36.414 -3.340 6.237 -1.210 H381 PCY 75
PCY H382 H382 H 0 0 N N N 213.905 110.027 -34.999 -4.589 6.306 0.057 H382 PCY 76
PCY H383 H383 H 0 0 N N N 214.504 109.590 -36.635 -3.104 7.273 0.218 H383 PCY 77
PCY H40 H40 H 0 1 N N N 214.543 106.688 -30.785 -7.038 -3.125 -2.223 H40 PCY 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PCY C1 N2 SING N N 1
PCY C1 N4 SING N N 2
PCY C1 O5 DOUB N N 3
PCY N2 C3 SING N N 4
PCY N2 H2 SING N N 5
PCY C3 C6 SING N N 6
PCY C3 C7 SING N N 7
PCY C3 C8 SING N N 8
PCY N4 C9 SING N N 9
PCY N4 C10 SING N N 10
PCY C6 C11 SING N N 11
PCY C6 O12 SING N N 12
PCY C6 H6 SING N N 13
PCY C7 C13 SING N N 14
PCY C7 O14 SING N N 15
PCY C7 C15 SING N N 16
PCY C8 N16 SING N N 17
PCY C8 C17 SING N N 18
PCY C8 H8 SING N N 19
PCY C9 H91 SING N N 20
PCY C9 H92 SING N N 21
PCY C9 H93 SING N N 22
PCY C10 H101 SING N N 23
PCY C10 H102 SING N N 24
PCY C10 H103 SING N N 25
PCY C11 H111 SING N N 26
PCY C11 H112 SING N N 27
PCY C11 H113 SING N N 28
PCY O12 H12 SING N N 29
PCY C13 H131 SING N N 30
PCY C13 H132 SING N N 31
PCY C13 H133 SING N N 32
PCY O14 H14 SING N N 33
PCY C15 C17 SING N N 34
PCY C15 C18 SING N N 35
PCY C15 O19 SING N N 36
PCY N16 H161 SING N N 37
PCY N16 H162 SING N N 38
PCY C17 N20 SING N N 39
PCY C17 H17 SING N N 40
PCY C18 O21 SING N N 41
PCY C18 H181 SING N N 42
PCY C18 H182 SING N N 43
PCY O19 H19 SING N N 44
PCY N20 C22 SING N N 45
PCY N20 H20 SING N N 46
PCY O21 C23 SING N N 47
PCY C22 C24 DOUB Y N 48
PCY C22 C25 SING Y N 49
PCY C23 O26 DOUB N N 50
PCY C23 C27 SING N N 51
PCY C24 C28 SING Y N 52
PCY C24 H24 SING N N 53
PCY C25 C29 DOUB Y N 54
PCY C25 H25 SING N N 55
PCY C27 C30 DOUB Y N 56
PCY C27 C31 SING Y N 57
PCY C28 C32 SING N N 58
PCY C28 C33 DOUB Y N 59
PCY C29 C33 SING Y N 60
PCY C29 H29 SING N N 61
PCY C30 C34 SING N N 62
PCY C30 C35 SING Y N 63
PCY C31 O36 SING N N 64
PCY C31 C37 DOUB Y N 65
PCY C32 C38 SING N N 66
PCY C32 O39 DOUB N N 67
PCY C33 H33 SING N N 68
PCY C34 H341 SING N N 69
PCY C34 H342 SING N N 70
PCY C34 H343 SING N N 71
PCY C35 C40 DOUB Y N 72
PCY C35 H35 SING N N 73
PCY O36 H36 SING N N 74
PCY C37 C40 SING Y N 75
PCY C37 H37 SING N N 76
PCY C38 H381 SING N N 77
PCY C38 H382 SING N N 78
PCY C38 H383 SING N N 79
PCY C40 H40 SING N N 80
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PCY SMILES ACDLabs 12.01 "O=C(c1cc(ccc1)NC2C(O)(C(O)(C(NC(=O)N(C)C)(C2N)C(O)C)C)COC(=O)c3c(cccc3O)C)C"
PCY InChI InChI 1.03
"InChI=1S/C28H38N4O8/c1-15-9-7-12-20(35)21(15)24(36)40-14-27(39)23(30-19-11-8-10-18(13-19)16(2)33)22(29)28(17(3)34,26(27,4)38)31-25(37)32(5)6/h7-13,17,22-23,30,34-35,38-39H,14,29H2,1-6H3,(H,31,37)/t17-,22-,23-,26-,27+,28-/m0/s1"
PCY InChIKey InChI 1.03 WVIUOSJLUCTGFK-JUJPXXQGSA-N
PCY SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)[C@]1(NC(=O)N(C)C)[C@@H](N)[C@H](Nc2cccc(c2)C(C)=O)[C@](O)(COC(=O)c3c(C)cccc3O)[C@]1(C)O"
PCY SMILES CACTVS 3.385 "C[CH](O)[C]1(NC(=O)N(C)C)[CH](N)[CH](Nc2cccc(c2)C(C)=O)[C](O)(COC(=O)c3c(C)cccc3O)[C]1(C)O"
PCY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cccc(c1C(=O)OC[C@]2([C@H]([C@@H]([C@]([C@@]2(C)O)([C@H](C)O)NC(=O)N(C)C)N)Nc3cccc(c3)C(=O)C)O)O"
PCY SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cccc(c1C(=O)OCC2(C(C(C(C2(C)O)(C(C)O)NC(=O)N(C)C)N)Nc3cccc(c3)C(=O)C)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PCY "SYSTEMATIC NAME" ACDLabs 12.01 "{(1S,2R,3R,4S,5S)-5-[(3-acetylphenyl)amino]-4-amino-3-[(dimethylcarbamoyl)amino]-1,2-dihydroxy-3-[(1S)-1-hydroxyethyl]-2-methylcyclopentyl}methyl 2-hydroxy-6-methylbenzoate"
PCY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1S,2R,3R,4S,5S)-4-azanyl-3-(dimethylcarbamoylamino)-5-[(3-ethanoylphenyl)amino]-2-methyl-1,2-bis(oxidanyl)-3-[(1S)-1-oxidanylethyl]cyclopentyl]methyl 2-methyl-6-oxidanyl-benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PCY "Create component" 2000-12-15 RCSB
PCY "Modify descriptor" 2011-06-04 RCSB
PCY "Modify name" 2013-05-13 RCSB
PCY "Modify name" 2014-10-07 RCSB
#