data_PD1 # _chem_comp.id PD1 _chem_comp.name "1-TERT-BUTYL-3-[6-(3,5-DIMETHOXY-PHENYL)-2-(4-DIETHYLAMINO-BUTYLAMINO)-PYRIDO[2,3-D]PYRIMIDIN-7-YL]-UREA" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H41 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PD 173074" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-14 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.670 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PD1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FGI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PD1 C1 C1 C 0 1 N N N 9.730 6.054 29.136 -1.835 -1.577 11.144 C1 PD1 1 PD1 C2 C2 C 0 1 N N N 11.162 5.779 28.691 -0.936 -1.394 9.920 C2 PD1 2 PD1 C3 C3 C 0 1 N N N 13.039 4.691 30.838 0.492 1.802 11.143 C3 PD1 3 PD1 C4 C4 C 0 1 N N N 12.867 4.016 29.465 0.326 0.290 10.981 C4 PD1 4 PD1 C5 C5 C 0 1 N N N 10.888 3.313 27.990 0.327 0.120 8.630 C5 PD1 5 PD1 C6 C6 C 0 1 N N N 10.453 3.887 26.656 -0.541 0.087 7.371 C6 PD1 6 PD1 C7 C7 C 0 1 N N N 9.454 2.991 25.973 0.355 0.100 6.131 C7 PD1 7 PD1 C8 C8 C 0 1 N N N 8.950 3.627 24.684 -0.513 0.066 4.872 C8 PD1 8 PD1 C9 C9 C 0 1 Y N N 7.131 3.072 22.905 -0.218 0.053 2.424 C9 PD1 9 PD1 C10 C10 C 0 1 Y N N 5.740 2.215 21.295 -2.139 -0.006 1.144 C10 PD1 10 PD1 C11 C11 C 0 1 Y N N 6.024 3.318 20.486 -1.340 0.004 -0.012 C11 PD1 11 PD1 C12 C12 C 0 1 Y N N 6.900 4.324 20.976 0.071 0.042 0.136 C12 PD1 12 PD1 C13 C13 C 0 1 Y N N 5.477 3.467 19.198 -1.899 -0.020 -1.300 C13 PD1 13 PD1 C14 C14 C 0 1 Y N N 5.821 4.568 18.433 -1.034 -0.006 -2.383 C14 PD1 14 PD1 C15 C15 C 0 1 Y N N 6.683 5.499 18.979 0.357 0.031 -2.159 C15 PD1 15 PD1 C16 C16 C 0 1 Y N N 5.298 4.673 17.153 -1.568 -0.032 -3.766 C16 PD1 16 PD1 C17 C17 C 0 1 Y N N 5.827 3.879 16.133 -2.409 0.986 -4.209 C17 PD1 17 PD1 C18 C18 C 0 1 Y N N 5.320 3.965 14.851 -2.906 0.960 -5.502 C18 PD1 18 PD1 C19 C19 C 0 1 Y N N 4.288 4.807 14.541 -2.567 -0.079 -6.356 C19 PD1 19 PD1 C20 C20 C 0 1 Y N N 3.762 5.589 15.552 -1.730 -1.095 -5.918 C20 PD1 20 PD1 C21 C21 C 0 1 Y N N 4.247 5.534 16.856 -1.225 -1.072 -4.628 C21 PD1 21 PD1 C22 C22 C 0 1 N N N 5.081 2.536 12.802 -4.066 1.648 -7.288 C22 PD1 22 PD1 C23 C23 C 0 1 N N N 1.762 6.211 14.160 -2.061 -1.853 -7.998 C23 PD1 23 PD1 C24 C24 C 0 1 N N N 7.912 7.643 18.498 2.552 0.081 -3.049 C24 PD1 24 PD1 C25 C25 C 0 1 N N N 9.237 8.821 20.228 4.838 0.133 -3.891 C25 PD1 25 PD1 C26 C26 C 0 1 N N N 10.568 8.719 19.551 5.553 0.141 -5.243 C26 PD1 26 PD1 C27 C27 C 0 1 N N N 8.628 10.193 19.949 5.204 1.399 -3.113 C27 PD1 27 PD1 C28 C28 C 0 1 N N N 9.434 8.644 21.706 5.269 -1.098 -3.093 C28 PD1 28 PD1 N1 N1 N 0 1 N N N 11.499 4.326 28.921 -0.528 0.013 9.818 N1 PD1 29 PD1 N2 N2 N 0 1 N N N 7.751 2.959 24.182 0.345 0.079 3.686 N2 PD1 30 PD1 N3 N3 N 0 1 Y N N 6.323 2.094 22.542 -1.544 0.018 2.319 N3 PD1 31 PD1 N4 N4 N 0 1 Y N N 7.429 4.145 22.180 0.580 0.071 1.374 N4 PD1 32 PD1 N5 N5 N 0 1 Y N N 7.190 5.355 20.203 0.858 0.054 -0.940 N5 PD1 33 PD1 N6 N6 N 0 1 N N N 7.070 6.652 18.232 1.219 0.044 -3.246 N6 PD1 34 PD1 N7 N7 N 0 1 N N N 8.360 7.764 19.750 3.389 0.094 -4.105 N7 PD1 35 PD1 O1 O1 O 0 1 N N N 5.857 3.151 13.858 -3.727 1.953 -5.934 O1 PD1 36 PD1 O2 O2 O 0 1 N N N 2.689 6.430 15.261 -1.400 -2.111 -6.758 O2 PD1 37 PD1 O3 O3 O 0 1 N N N 8.225 8.449 17.621 2.999 0.101 -1.919 O3 PD1 38 PD1 H11 1H1 H 0 1 N N N 9.481 7.127 28.966 -2.720 -0.949 11.043 H11 PD1 39 PD1 H12 2H1 H 0 1 N N N 8.999 5.371 28.642 -2.138 -2.621 11.220 H12 PD1 40 PD1 H13A 3H1 H 0 0 N N N 9.552 5.744 30.192 -1.288 -1.291 12.043 H13A PD1 41 PD1 H21A 1H2 H 0 0 N N N 11.339 6.088 27.634 -0.051 -2.022 10.022 H21A PD1 42 PD1 H22 2H2 H 0 1 N N N 11.892 6.461 29.184 -1.483 -1.679 9.022 H22 PD1 43 PD1 H31 1H3 H 0 1 N N N 14.052 4.461 31.241 1.152 2.007 11.986 H31 PD1 44 PD1 H32 2H3 H 0 1 N N N 12.840 5.787 30.796 0.925 2.220 10.234 H32 PD1 45 PD1 H33 3H3 H 0 1 N N N 12.228 4.409 31.550 -0.480 2.257 11.324 H33 PD1 46 PD1 H41 1H4 H 0 1 N N N 13.677 4.297 28.752 -0.134 -0.122 11.878 H41 PD1 47 PD1 H42 2H4 H 0 1 N N N 13.065 2.919 29.506 1.303 -0.168 10.830 H42 PD1 48 PD1 H51 1H5 H 0 1 N N N 10.039 2.787 28.485 0.881 1.058 8.664 H51 PD1 49 PD1 H52 2H5 H 0 1 N N N 11.580 2.452 27.839 1.027 -0.714 8.610 H52 PD1 50 PD1 H61 1H6 H 0 1 N N N 10.062 4.925 26.765 -1.147 -0.819 7.371 H61 PD1 51 PD1 H62 2H6 H 0 1 N N N 11.327 4.100 25.998 -1.193 0.960 7.356 H62 PD1 52 PD1 H71 1H7 H 0 1 N N N 9.868 1.971 25.795 0.961 1.006 6.131 H71 PD1 53 PD1 H72 2H7 H 0 1 N N N 8.614 2.715 26.652 1.008 -0.773 6.146 H72 PD1 54 PD1 H81 1H8 H 0 1 N N N 8.781 4.722 24.810 -1.119 -0.839 4.873 H81 PD1 55 PD1 H82 2H8 H 0 1 N N N 9.750 3.661 23.908 -1.165 0.940 4.858 H82 PD1 56 PD1 H10 H10 H 0 1 N N N 5.047 1.430 20.945 -3.216 -0.035 1.070 H10 PD1 57 PD1 H13 H13 H 0 1 N N N 4.777 2.719 18.787 -2.969 -0.050 -1.442 H13 PD1 58 PD1 H17 H17 H 0 1 N N N 6.652 3.177 16.341 -2.674 1.796 -3.544 H17 PD1 59 PD1 H19 H19 H 0 1 N N N 3.893 4.853 13.511 -2.955 -0.097 -7.363 H19 PD1 60 PD1 H21 H21 H 0 1 N N N 3.803 6.165 17.644 -0.574 -1.863 -4.288 H21 PD1 61 PD1 H221 1H22 H 0 0 N N N 5.511 1.883 12.006 -4.727 2.422 -7.680 H221 PD1 62 PD1 H222 2H22 H 0 0 N N N 4.264 1.956 13.292 -3.158 1.607 -7.890 H222 PD1 63 PD1 H223 3H22 H 0 0 N N N 4.524 3.354 12.287 -4.573 0.684 -7.328 H223 PD1 64 PD1 H231 1H23 H 0 0 N N N 0.903 6.883 13.927 -1.825 -2.646 -8.708 H231 PD1 65 PD1 H232 2H23 H 0 0 N N N 2.371 6.123 13.230 -3.138 -1.820 -7.836 H232 PD1 66 PD1 H233 3H23 H 0 0 N N N 1.349 5.181 14.278 -1.724 -0.897 -8.397 H233 PD1 67 PD1 H261 1H26 H 0 0 N N N 11.012 7.717 19.754 6.631 0.170 -5.084 H261 PD1 68 PD1 H262 2H26 H 0 0 N N N 10.503 8.937 18.459 5.292 -0.760 -5.798 H262 PD1 69 PD1 H263 3H26 H 0 0 N N N 11.252 9.550 19.839 5.246 1.019 -5.812 H263 PD1 70 PD1 H271 1H27 H 0 0 N N N 7.636 10.269 20.453 4.897 2.276 -3.681 H271 PD1 71 PD1 H272 2H27 H 0 0 N N N 9.312 11.024 20.237 4.694 1.393 -2.149 H272 PD1 72 PD1 H273 3H27 H 0 0 N N N 8.563 10.411 18.857 6.282 1.428 -2.954 H273 PD1 73 PD1 H281 1H28 H 0 0 N N N 8.442 8.720 22.210 5.008 -2.000 -3.647 H281 PD1 74 PD1 H282 2H28 H 0 0 N N N 9.967 7.697 21.954 6.347 -1.069 -2.933 H282 PD1 75 PD1 H283 3H28 H 0 0 N N N 10.181 9.357 22.125 4.759 -1.104 -2.129 H283 PD1 76 PD1 HN2 HN2 H 0 1 N N N 7.018 3.172 24.858 1.310 0.105 3.785 HN2 PD1 77 PD1 HN6 HN6 H 0 1 N N N 6.190 7.119 18.012 0.862 0.028 -4.148 HN6 PD1 78 PD1 HN7 HN7 H 0 1 N N N 8.020 7.022 20.362 3.032 0.077 -5.007 HN7 PD1 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PD1 C1 C2 SING N N 1 PD1 C1 H11 SING N N 2 PD1 C1 H12 SING N N 3 PD1 C1 H13A SING N N 4 PD1 C2 N1 SING N N 5 PD1 C2 H21A SING N N 6 PD1 C2 H22 SING N N 7 PD1 C3 C4 SING N N 8 PD1 C3 H31 SING N N 9 PD1 C3 H32 SING N N 10 PD1 C3 H33 SING N N 11 PD1 C4 N1 SING N N 12 PD1 C4 H41 SING N N 13 PD1 C4 H42 SING N N 14 PD1 C5 C6 SING N N 15 PD1 C5 N1 SING N N 16 PD1 C5 H51 SING N N 17 PD1 C5 H52 SING N N 18 PD1 C6 C7 SING N N 19 PD1 C6 H61 SING N N 20 PD1 C6 H62 SING N N 21 PD1 C7 C8 SING N N 22 PD1 C7 H71 SING N N 23 PD1 C7 H72 SING N N 24 PD1 C8 N2 SING N N 25 PD1 C8 H81 SING N N 26 PD1 C8 H82 SING N N 27 PD1 C9 N2 SING N N 28 PD1 C9 N3 DOUB Y N 29 PD1 C9 N4 SING Y N 30 PD1 C10 C11 DOUB Y N 31 PD1 C10 N3 SING Y N 32 PD1 C10 H10 SING N N 33 PD1 C11 C12 SING Y N 34 PD1 C11 C13 SING Y N 35 PD1 C12 N4 DOUB Y N 36 PD1 C12 N5 SING Y N 37 PD1 C13 C14 DOUB Y N 38 PD1 C13 H13 SING N N 39 PD1 C14 C15 SING Y N 40 PD1 C14 C16 SING Y N 41 PD1 C15 N5 DOUB Y N 42 PD1 C15 N6 SING N N 43 PD1 C16 C17 DOUB Y N 44 PD1 C16 C21 SING Y N 45 PD1 C17 C18 SING Y N 46 PD1 C17 H17 SING N N 47 PD1 C18 C19 DOUB Y N 48 PD1 C18 O1 SING N N 49 PD1 C19 C20 SING Y N 50 PD1 C19 H19 SING N N 51 PD1 C20 C21 DOUB Y N 52 PD1 C20 O2 SING N N 53 PD1 C21 H21 SING N N 54 PD1 C22 O1 SING N N 55 PD1 C22 H221 SING N N 56 PD1 C22 H222 SING N N 57 PD1 C22 H223 SING N N 58 PD1 C23 O2 SING N N 59 PD1 C23 H231 SING N N 60 PD1 C23 H232 SING N N 61 PD1 C23 H233 SING N N 62 PD1 C24 N6 SING N N 63 PD1 C24 N7 SING N N 64 PD1 C24 O3 DOUB N N 65 PD1 C25 C26 SING N N 66 PD1 C25 C27 SING N N 67 PD1 C25 C28 SING N N 68 PD1 C25 N7 SING N N 69 PD1 C26 H261 SING N N 70 PD1 C26 H262 SING N N 71 PD1 C26 H263 SING N N 72 PD1 C27 H271 SING N N 73 PD1 C27 H272 SING N N 74 PD1 C27 H273 SING N N 75 PD1 C28 H281 SING N N 76 PD1 C28 H282 SING N N 77 PD1 C28 H283 SING N N 78 PD1 N2 HN2 SING N N 79 PD1 N6 HN6 SING N N 80 PD1 N7 HN7 SING N N 81 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PD1 SMILES ACDLabs 10.04 "O=C(NC(C)(C)C)Nc1nc3nc(ncc3cc1c2cc(OC)cc(OC)c2)NCCCCN(CC)CC" PD1 SMILES_CANONICAL CACTVS 3.341 "CCN(CC)CCCCNc1ncc2cc(c(NC(=O)NC(C)(C)C)nc2n1)c3cc(OC)cc(OC)c3" PD1 SMILES CACTVS 3.341 "CCN(CC)CCCCNc1ncc2cc(c(NC(=O)NC(C)(C)C)nc2n1)c3cc(OC)cc(OC)c3" PD1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCN(CC)CCCCNc1ncc2cc(c(nc2n1)NC(=O)NC(C)(C)C)c3cc(cc(c3)OC)OC" PD1 SMILES "OpenEye OEToolkits" 1.5.0 "CCN(CC)CCCCNc1ncc2cc(c(nc2n1)NC(=O)NC(C)(C)C)c3cc(cc(c3)OC)OC" PD1 InChI InChI 1.03 "InChI=1S/C28H41N7O3/c1-8-35(9-2)13-11-10-12-29-26-30-18-20-16-23(19-14-21(37-6)17-22(15-19)38-7)25(31-24(20)32-26)33-27(36)34-28(3,4)5/h14-18H,8-13H2,1-7H3,(H3,29,30,31,32,33,34,36)" PD1 InChIKey InChI 1.03 DXCUKNQANPLTEJ-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PD1 "SYSTEMATIC NAME" ACDLabs 10.04 "1-tert-butyl-3-[2-{[4-(diethylamino)butyl]amino}-6-(3,5-dimethoxyphenyl)pyrido[2,3-d]pyrimidin-7-yl]urea" PD1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "3-tert-butyl-1-[2-(4-diethylaminobutylamino)-6-(3,5-dimethoxyphenyl)pyrido[6,5-d]pyrimidin-7-yl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PD1 "Create component" 1999-07-14 EBI PD1 "Modify aromatic_flag" 2011-06-04 RCSB PD1 "Modify descriptor" 2011-06-04 RCSB PD1 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PD1 _pdbx_chem_comp_synonyms.name "PD 173074" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##