data_PD3 # _chem_comp.id PD3 _chem_comp.name "1-{3-[(4-amino-1-cyclopentyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)methyl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 F3 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-06 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 495.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PD3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EL7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PD3 C4 C4 C 0 1 Y N N 22.639 -8.898 9.727 -5.073 0.899 -0.748 C4 PD3 1 PD3 C5 C5 C 0 1 Y N N 22.553 -7.722 9.001 -4.987 -0.414 -0.244 C5 PD3 2 PD3 C6 C6 C 0 1 Y N N 23.714 -7.158 8.499 -5.754 -1.418 -0.865 C6 PD3 3 PD3 N1 N1 N 0 1 Y N N 24.883 -7.775 8.736 -6.522 -1.081 -1.895 N1 PD3 4 PD3 N3 N3 N 0 1 Y N N 23.839 -9.461 9.928 -5.872 1.137 -1.787 N3 PD3 5 PD3 CAQ CAQ C 0 1 N N N 21.120 -10.067 12.397 -2.496 3.384 -0.306 CAQ PD3 6 PD3 CAO CAO C 0 1 N N N 21.872 -11.271 12.973 -2.215 4.695 0.449 CAO PD3 7 PD3 CAP CAP C 0 1 N N N 21.633 -12.356 11.922 -3.563 5.162 1.038 CAP PD3 8 PD3 CAR CAR C 0 1 N N N 21.958 -11.546 10.667 -4.404 3.865 1.137 CAR PD3 9 PD3 CBH CBH C 0 1 N N N 21.021 -10.358 10.896 -4.004 3.100 -0.149 CBH PD3 10 PD3 NBI NBI N 0 1 Y N N 21.391 -9.188 10.086 -4.241 1.663 0.014 NBI PD3 11 PD3 NAV NAV N 0 1 Y N N 20.582 -8.353 9.674 -3.653 0.839 0.982 NAV PD3 12 PD3 C2 C2 C 0 1 Y N N 24.928 -8.895 9.436 -6.570 0.165 -2.333 C2 PD3 13 PD3 NAA NAA N 0 1 N N N 23.670 -6.024 7.807 -5.709 -2.723 -0.414 NAA PD3 14 PD3 CBE CBE C 0 1 Y N N 21.199 -7.394 8.988 -4.082 -0.382 0.839 CBE PD3 15 PD3 CAS CAS C 0 1 N N N 20.563 -6.150 8.368 -3.680 -1.562 1.685 CAS PD3 16 PD3 CAZ CAZ C 0 1 Y N N 19.360 -6.527 7.500 -2.395 -2.146 1.155 CAZ PD3 17 PD3 CAM CAM C 0 1 Y N N 18.213 -5.745 7.497 -1.182 -1.686 1.629 CAM PD3 18 PD3 CAH CAH C 0 1 Y N N 19.432 -7.671 6.712 -2.433 -3.145 0.200 CAH PD3 19 PD3 CAF CAF C 0 1 Y N N 18.353 -8.039 5.917 -1.257 -3.683 -0.288 CAF PD3 20 PD3 CAI CAI C 0 1 Y N N 17.205 -7.255 5.922 -0.040 -3.225 0.177 CAI PD3 21 PD3 CBB CBB C 0 1 Y N N 17.124 -6.111 6.707 0.001 -2.225 1.140 CBB PD3 22 PD3 NAW NAW N 0 1 N N N 15.994 -5.415 6.638 1.232 -1.758 1.613 NAW PD3 23 PD3 CAY CAY C 0 1 N N N 15.694 -4.274 7.255 2.286 -1.670 0.778 CAY PD3 24 PD3 OAB OAB O 0 1 N N N 16.481 -3.681 7.991 2.192 -2.076 -0.364 OAB PD3 25 PD3 NAX NAX N 0 1 N N N 14.460 -3.853 6.996 3.445 -1.133 1.209 NAX PD3 26 PD3 CBC CBC C 0 1 Y N N 13.860 -2.748 7.430 4.508 -0.955 0.316 CBC PD3 27 PD3 CAN CAN C 0 1 Y N N 14.519 -1.754 8.145 5.339 0.152 0.435 CAN PD3 28 PD3 CAJ CAJ C 0 1 Y N N 12.541 -2.549 7.041 4.738 -1.888 -0.686 CAJ PD3 29 PD3 CAG CAG C 0 1 Y N N 11.873 -1.374 7.361 5.789 -1.709 -1.565 CAG PD3 30 PD3 CAK CAK C 0 1 Y N N 12.540 -0.385 8.073 6.611 -0.604 -1.447 CAK PD3 31 PD3 CBD CBD C 0 1 Y N N 13.861 -0.570 8.461 6.387 0.324 -0.447 CBD PD3 32 PD3 CBJ CBJ C 0 1 N N N 14.581 0.578 9.170 7.289 1.525 -0.319 CBJ PD3 33 PD3 FAD FAD F 0 1 N N N 15.670 0.137 9.789 8.359 1.217 0.528 FAD PD3 34 PD3 FAE FAE F 0 1 N N N 14.937 1.486 8.269 7.780 1.876 -1.581 FAE PD3 35 PD3 FAC FAC F 0 1 N N N 13.765 1.131 10.061 6.565 2.597 0.215 FAC PD3 36 PD3 HAQ HAQ H 0 1 N N N 21.666 -9.131 12.585 -2.245 3.499 -1.360 HAQ PD3 37 PD3 HAQA HAQA H 0 0 N N N 20.132 -9.933 12.861 -1.915 2.571 0.129 HAQA PD3 38 PD3 HAO HAO H 0 1 N N N 22.943 -11.058 13.103 -1.499 4.518 1.251 HAO PD3 39 PD3 HAOA HAOA H 0 0 N N N 21.525 -11.558 13.977 -1.827 5.446 -0.239 HAOA PD3 40 PD3 HAP HAP H 0 1 N N N 22.283 -13.234 12.051 -3.416 5.598 2.026 HAP PD3 41 PD3 HAPA HAPA H 0 0 N N N 20.634 -12.815 11.939 -4.042 5.880 0.372 HAPA PD3 42 PD3 HAR HAR H 0 1 N N N 23.017 -11.254 10.604 -4.132 3.295 2.025 HAR PD3 43 PD3 HARA HARA H 0 0 N N N 21.815 -12.079 9.715 -5.469 4.095 1.135 HARA PD3 44 PD3 HBH HBH H 0 1 N N N 19.991 -10.590 10.586 -4.556 3.483 -1.008 HBH PD3 45 PD3 H2 H2 H 0 1 N N N 25.885 -9.363 9.612 -7.208 0.395 -3.174 H2 PD3 46 PD3 HNAA HNAA H 0 0 N N N 23.659 -5.248 8.438 -5.081 -2.974 0.281 HNAA PD3 47 PD3 HNAB HNAB H 0 0 N N N 24.475 -5.962 7.217 -6.305 -3.388 -0.793 HNAB PD3 48 PD3 HAS HAS H 0 1 N N N 20.228 -5.480 9.173 -3.534 -1.237 2.715 HAS PD3 49 PD3 HASA HASA H 0 0 N N N 21.311 -5.650 7.735 -4.464 -2.318 1.651 HASA PD3 50 PD3 HAM HAM H 0 1 N N N 18.164 -4.854 8.106 -1.153 -0.909 2.378 HAM PD3 51 PD3 HAH HAH H 0 1 N N N 20.328 -8.274 6.718 -3.384 -3.505 -0.165 HAH PD3 52 PD3 HAF HAF H 0 1 N N N 18.406 -8.925 5.302 -1.290 -4.464 -1.034 HAF PD3 53 PD3 HAI HAI H 0 1 N N N 16.364 -7.539 5.307 0.878 -3.646 -0.205 HAI PD3 54 PD3 HNAW HNAW H 0 0 N N N 15.281 -5.795 6.050 1.327 -1.497 2.543 HNAW PD3 55 PD3 HNAX HNAX H 0 0 N N N 13.914 -4.441 6.400 3.542 -0.869 2.137 HNAX PD3 56 PD3 HAN HAN H 0 1 N N N 15.543 -1.901 8.455 5.164 0.877 1.216 HAN PD3 57 PD3 HAJ HAJ H 0 1 N N N 12.028 -3.318 6.482 4.097 -2.751 -0.779 HAJ PD3 58 PD3 HAG HAG H 0 1 N N N 10.846 -1.231 7.059 5.968 -2.434 -2.345 HAG PD3 59 PD3 HAK HAK H 0 1 N N N 12.029 0.532 8.326 7.432 -0.467 -2.135 HAK PD3 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PD3 C5 C4 DOUB Y N 1 PD3 C4 N3 SING Y N 2 PD3 C4 NBI SING Y N 3 PD3 C6 C5 SING Y N 4 PD3 CBE C5 SING Y N 5 PD3 NAA C6 SING N N 6 PD3 C6 N1 DOUB Y N 7 PD3 N1 C2 SING Y N 8 PD3 C2 N3 DOUB Y N 9 PD3 CBH CAQ SING N N 10 PD3 CAQ CAO SING N N 11 PD3 CAQ HAQ SING N N 12 PD3 CAQ HAQA SING N N 13 PD3 CAP CAO SING N N 14 PD3 CAO HAO SING N N 15 PD3 CAO HAOA SING N N 16 PD3 CAR CAP SING N N 17 PD3 CAP HAP SING N N 18 PD3 CAP HAPA SING N N 19 PD3 CAR CBH SING N N 20 PD3 CAR HAR SING N N 21 PD3 CAR HARA SING N N 22 PD3 NBI CBH SING N N 23 PD3 CBH HBH SING N N 24 PD3 NAV NBI SING Y N 25 PD3 CBE NAV DOUB Y N 26 PD3 C2 H2 SING N N 27 PD3 NAA HNAA SING N N 28 PD3 NAA HNAB SING N N 29 PD3 CAS CBE SING N N 30 PD3 CAZ CAS SING N N 31 PD3 CAS HAS SING N N 32 PD3 CAS HASA SING N N 33 PD3 CAH CAZ DOUB Y N 34 PD3 CAM CAZ SING Y N 35 PD3 CBB CAM DOUB Y N 36 PD3 CAM HAM SING N N 37 PD3 CAF CAH SING Y N 38 PD3 CAH HAH SING N N 39 PD3 CAF CAI DOUB Y N 40 PD3 CAF HAF SING N N 41 PD3 CAI CBB SING Y N 42 PD3 CAI HAI SING N N 43 PD3 NAW CBB SING N N 44 PD3 NAW CAY SING N N 45 PD3 NAW HNAW SING N N 46 PD3 NAX CAY SING N N 47 PD3 CAY OAB DOUB N N 48 PD3 NAX CBC SING N N 49 PD3 NAX HNAX SING N N 50 PD3 CAJ CBC DOUB Y N 51 PD3 CBC CAN SING Y N 52 PD3 CAN CBD DOUB Y N 53 PD3 CAN HAN SING N N 54 PD3 CAJ CAG SING Y N 55 PD3 CAJ HAJ SING N N 56 PD3 CAG CAK DOUB Y N 57 PD3 CAG HAG SING N N 58 PD3 CAK CBD SING Y N 59 PD3 CAK HAK SING N N 60 PD3 CBD CBJ SING N N 61 PD3 FAE CBJ SING N N 62 PD3 CBJ FAD SING N N 63 PD3 CBJ FAC SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PD3 SMILES ACDLabs 10.04 "FC(F)(F)c1cc(ccc1)NC(=O)Nc2cccc(c2)Cc4nn(c3ncnc(c34)N)C5CCCC5" PD3 SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(nc(Cc3cccc(NC(=O)Nc4cccc(c4)C(F)(F)F)c3)c12)C5CCCC5" PD3 SMILES CACTVS 3.341 "Nc1ncnc2n(nc(Cc3cccc(NC(=O)Nc4cccc(c4)C(F)(F)F)c3)c12)C5CCCC5" PD3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)C(F)(F)F)Cc3c4c(ncnc4n(n3)C5CCCC5)N" PD3 SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(cc(c1)NC(=O)Nc2cccc(c2)C(F)(F)F)Cc3c4c(ncnc4n(n3)C5CCCC5)N" PD3 InChI InChI 1.03 "InChI=1S/C25H24F3N7O/c26-25(27,28)16-6-4-8-18(13-16)33-24(36)32-17-7-3-5-15(11-17)12-20-21-22(29)30-14-31-23(21)35(34-20)19-9-1-2-10-19/h3-8,11,13-14,19H,1-2,9-10,12H2,(H2,29,30,31)(H2,32,33,36)" PD3 InChIKey InChI 1.03 RKZUINFXRREENO-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PD3 "SYSTEMATIC NAME" ACDLabs 10.04 "1-{3-[(4-amino-1-cyclopentyl-1H-pyrazolo[3,4-d]pyrimidin-3-yl)methyl]phenyl}-3-[3-(trifluoromethyl)phenyl]urea" PD3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[3-[(4-amino-1-cyclopentyl-pyrazolo[4,5-e]pyrimidin-3-yl)methyl]phenyl]-3-[3-(trifluoromethyl)phenyl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PD3 "Create component" 2008-10-06 RCSB PD3 "Modify aromatic_flag" 2011-06-04 RCSB PD3 "Modify descriptor" 2011-06-04 RCSB #