data_PD9 # _chem_comp.id PD9 _chem_comp.name "(~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H15 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-10-30 _chem_comp.pdbx_modified_date 2019-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5EH3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PD9 C4 C1 C 0 1 Y N N 28.813 7.329 -27.599 -3.167 0.616 -0.029 C4 PD9 1 PD9 C5 C2 C 0 1 Y N N 29.714 7.851 -28.539 -1.925 1.193 0.101 C5 PD9 2 PD9 C6 C3 C 0 1 Y N N 27.460 7.231 -27.950 -3.314 -0.761 0.088 C6 PD9 3 PD9 C10 C4 C 0 1 Y N N 27.918 8.154 -30.138 -0.951 -0.999 0.459 C10 PD9 4 PD9 C11 C5 C 0 1 Y N N 29.273 8.262 -29.806 -0.802 0.391 0.347 C11 PD9 5 PD9 C12 C6 C 0 1 N N N 30.213 8.767 -30.710 0.523 1.001 0.480 C12 PD9 6 PD9 C14 C7 C 0 1 N N N 30.688 6.476 -31.582 1.522 -0.999 -0.482 C14 PD9 7 PD9 N15 N1 N 0 1 N N N 30.422 5.428 -31.533 1.421 -2.014 -0.981 N15 PD9 8 PD9 C16 C8 C 0 1 N N N 32.087 8.397 -32.604 2.984 0.826 0.442 C16 PD9 9 PD9 O17 O1 O 0 1 N N N 32.265 9.611 -32.541 3.094 1.846 1.097 O17 PD9 10 PD9 C19 C9 C 0 1 N N N 32.720 6.139 -33.647 5.412 0.762 0.243 C19 PD9 11 PD9 C20 C10 C 0 1 N N N 33.851 8.244 -34.354 3.955 -1.055 -0.765 C20 PD9 12 PD9 C21 C11 C 0 1 N N N 31.487 5.747 -34.482 5.793 1.707 -0.898 C21 PD9 13 PD9 O21 O2 O 0 1 N N N 28.523 5.824 -25.701 -5.453 0.955 -0.403 O21 PD9 14 PD9 N20 N2 N 1 1 N N N 29.204 6.931 -26.374 -4.352 1.464 -0.288 N20 PD9 15 PD9 O22 O3 O -1 1 N N N 30.291 7.632 -25.728 -4.227 2.672 -0.386 O22 PD9 16 PD9 O7 O4 O 0 1 N N N 26.554 6.726 -27.066 -4.543 -1.324 -0.036 O7 PD9 17 PD9 C8 C12 C 0 1 Y N N 27.014 7.638 -29.208 -2.201 -1.568 0.333 C8 PD9 18 PD9 O9 O5 O 0 1 N N N 25.687 7.511 -29.477 -2.350 -2.915 0.441 O9 PD9 19 PD9 C13 C13 C 0 1 N N N 31.004 7.813 -31.637 1.650 0.280 0.148 C13 PD9 20 PD9 N18 N3 N 0 1 N N N 32.803 7.618 -33.497 4.085 0.196 -0.013 N18 PD9 21 PD9 C22 C14 C 0 1 N N N 33.879 7.736 -35.804 3.793 -2.222 0.211 C22 PD9 22 PD9 H1 H1 H 0 1 N N N 30.760 7.938 -28.284 -1.815 2.264 0.013 H1 PD9 23 PD9 H2 H2 H 0 1 N N N 27.572 8.469 -31.111 -0.089 -1.623 0.648 H2 PD9 24 PD9 H3 H3 H 0 1 N N N 30.388 9.831 -30.762 0.616 2.016 0.837 H3 PD9 25 PD9 H4 H4 H 0 1 N N N 32.643 5.678 -32.651 6.144 -0.043 0.308 H4 PD9 26 PD9 H5 H5 H 0 1 N N N 33.628 5.775 -34.150 5.396 1.314 1.183 H5 PD9 27 PD9 H6 H6 H 0 1 N N N 34.832 8.040 -33.900 3.080 -1.000 -1.413 H6 PD9 28 PD9 H7 H7 H 0 1 N N N 33.674 9.330 -34.374 4.847 -1.209 -1.371 H7 PD9 29 PD9 H8 H8 H 0 1 N N N 31.444 4.652 -34.581 5.061 2.512 -0.962 H8 PD9 30 PD9 H9 H9 H 0 1 N N N 30.576 6.106 -33.981 6.780 2.128 -0.707 H9 PD9 31 PD9 H10 H10 H 0 1 N N N 31.560 6.203 -35.480 5.809 1.154 -1.837 H10 PD9 32 PD9 H11 H11 H 0 1 N N N 27.012 6.281 -26.362 -4.771 -1.574 -0.941 H11 PD9 33 PD9 H12 H12 H 0 1 N N N 25.244 7.143 -28.722 -2.519 -3.221 1.343 H12 PD9 34 PD9 H13 H13 H 0 1 N N N 34.678 8.250 -36.358 3.697 -3.153 -0.348 H13 PD9 35 PD9 H14 H14 H 0 1 N N N 34.068 6.652 -35.809 4.668 -2.277 0.859 H14 PD9 36 PD9 H15 H15 H 0 1 N N N 32.910 7.942 -36.283 2.901 -2.068 0.817 H15 PD9 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PD9 C22 C20 SING N N 1 PD9 C21 C19 SING N N 2 PD9 C20 N18 SING N N 3 PD9 C19 N18 SING N N 4 PD9 N18 C16 SING N N 5 PD9 C16 O17 DOUB N N 6 PD9 C16 C13 SING N N 7 PD9 C13 C14 SING N N 8 PD9 C13 C12 DOUB N E 9 PD9 C14 N15 TRIP N N 10 PD9 C12 C11 SING N N 11 PD9 C10 C11 DOUB Y N 12 PD9 C10 C8 SING Y N 13 PD9 C11 C5 SING Y N 14 PD9 O9 C8 SING N N 15 PD9 C8 C6 DOUB Y N 16 PD9 C5 C4 DOUB Y N 17 PD9 C6 C4 SING Y N 18 PD9 C6 O7 SING N N 19 PD9 C4 N20 SING N N 20 PD9 N20 O22 SING N N 21 PD9 N20 O21 DOUB N N 22 PD9 C5 H1 SING N N 23 PD9 C10 H2 SING N N 24 PD9 C12 H3 SING N N 25 PD9 C19 H4 SING N N 26 PD9 C19 H5 SING N N 27 PD9 C20 H6 SING N N 28 PD9 C20 H7 SING N N 29 PD9 C21 H8 SING N N 30 PD9 C21 H9 SING N N 31 PD9 C21 H10 SING N N 32 PD9 O7 H11 SING N N 33 PD9 O9 H12 SING N N 34 PD9 C22 H13 SING N N 35 PD9 C22 H14 SING N N 36 PD9 C22 H15 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PD9 InChI InChI 1.03 "InChI=1S/C14H15N3O5/c1-3-16(4-2)14(20)10(8-15)5-9-6-11(17(21)22)13(19)12(18)7-9/h5-7,18-19H,3-4H2,1-2H3/b10-5+" PD9 InChIKey InChI 1.03 JRURYQJSLYLRLN-BJMVGYQFSA-N PD9 SMILES_CANONICAL CACTVS 3.385 "CCN(CC)C(=O)C(=C/c1cc(O)c(O)c(c1)[N+]([O-])=O)/C#N" PD9 SMILES CACTVS 3.385 "CCN(CC)C(=O)C(=Cc1cc(O)c(O)c(c1)[N+]([O-])=O)C#N" PD9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CCN(CC)C(=O)/C(=C/c1cc(c(c(c1)O)O)[N+](=O)[O-])/C#N" PD9 SMILES "OpenEye OEToolkits" 2.0.4 "CCN(CC)C(=O)C(=Cc1cc(c(c(c1)O)O)[N+](=O)[O-])C#N" # _pdbx_chem_comp_identifier.comp_id PD9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.4 _pdbx_chem_comp_identifier.identifier "(~{E})-2-cyano-~{N},~{N}-diethyl-3-[3-nitro-4,5-bis(oxidanyl)phenyl]prop-2-enamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PD9 "Create component" 2015-10-30 PDBJ PD9 "Initial release" 2019-07-10 RCSB ##