data_PDP # _chem_comp.id PDP _chem_comp.name "PYRIDOXAL-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H11 N O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 327.122 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ABB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PDP N1 N1 N 0 1 Y N N 41.414 3.391 29.326 2.102 -0.031 3.405 N1 PDP 1 PDP C2 C2 C 0 1 Y N N 40.922 2.422 30.122 1.379 -0.021 4.504 C2 PDP 2 PDP C2A C2A C 0 1 N N N 40.717 2.678 31.575 2.064 -0.041 5.846 C2A PDP 3 PDP C3 C3 C 0 1 Y N N 40.549 1.209 29.571 -0.008 0.002 4.443 C3 PDP 4 PDP O3 O3 O 0 1 N N N 40.112 0.178 30.408 -0.749 0.012 5.579 O3 PDP 5 PDP C4 C4 C 0 1 Y N N 40.681 0.980 28.227 -0.630 0.026 3.182 C4 PDP 6 PDP C4A C4A C 0 1 N N N 40.191 -0.290 27.603 -2.097 0.058 3.061 C4A PDP 7 PDP O4A O4A O 0 1 N Y N 39.161 -0.958 28.230 -2.787 0.068 4.057 O4A PDP 8 PDP C5 C5 C 0 1 Y N N 41.215 1.952 27.405 0.187 0.014 2.043 C5 PDP 9 PDP C6 C6 C 0 1 Y N N 41.557 3.194 27.982 1.557 -0.015 2.204 C6 PDP 10 PDP C5A C5A C 0 1 N N N 41.212 1.798 25.954 -0.420 0.033 0.665 C5A PDP 11 PDP O5A O5A O 0 1 N N N 40.398 2.906 25.428 0.619 0.015 -0.314 O5A PDP 12 PDP PA PA P 0 1 N N S 39.956 3.348 23.924 -0.097 0.036 -1.755 PA PDP 13 PDP O1A O1A O 0 1 N N N 38.483 3.179 23.966 -0.916 1.262 -1.881 O1A PDP 14 PDP O3A O3A O 0 1 N N N 40.085 4.937 23.425 1.021 0.017 -2.912 O3A PDP 15 PDP O2A O2A O 0 1 N N N 40.621 2.495 22.897 -1.044 -1.258 -1.902 O2A PDP 16 PDP PB PB P 0 1 N N N 41.487 5.820 23.427 0.237 0.039 -4.318 PB PDP 17 PDP O1B O1B O 0 1 N N N 41.658 6.257 24.844 -0.586 1.265 -4.404 O1B PDP 18 PDP O2B O2B O 0 1 N N N 42.608 4.970 22.870 1.301 0.021 -5.526 O2B PDP 19 PDP O3B O3B O 0 1 N N N 41.138 6.976 22.566 -0.714 -1.255 -4.423 O3B PDP 20 PDP H2A1 1H2A H 0 0 N N N 40.309 1.875 32.233 2.251 0.981 6.174 H2A1 PDP 21 PDP H2A2 2H2A H 0 0 N N N 41.680 3.033 32.008 1.426 -0.544 6.572 H2A2 PDP 22 PDP H2A3 3H2A H 0 0 N N N 40.074 3.582 31.685 3.011 -0.574 5.763 H2A3 PDP 23 PDP HO3 HO3 H 0 1 N N N 39.855 -0.654 30.029 -0.925 -0.910 5.806 HO3 PDP 24 PDP H4A H4A H 0 1 N N N 40.590 -0.735 26.676 -2.558 0.072 2.084 H4A PDP 25 PDP H6 H6 H 0 1 N N N 41.943 4.026 27.370 2.193 -0.024 1.331 H6 PDP 26 PDP H5A1 1H5A H 0 0 N N N 42.233 1.747 25.510 -1.056 -0.843 0.536 H5A1 PDP 27 PDP H5A2 2H5A H 0 0 N N N 40.867 0.793 25.614 -1.018 0.936 0.543 H5A2 PDP 28 PDP HOA2 2HOA H 0 0 N N N 40.363 2.752 22.019 -0.472 -2.033 -1.815 HOA2 PDP 29 PDP HOB2 2HOB H 0 0 N N N 43.411 5.476 22.871 0.791 0.035 -6.348 HOB2 PDP 30 PDP HOB3 3HOB H 0 0 N N N 41.941 7.482 22.567 -0.139 -2.030 -4.362 HOB3 PDP 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PDP N1 C2 DOUB Y N 1 PDP N1 C6 SING Y N 2 PDP C2 C2A SING N N 3 PDP C2 C3 SING Y N 4 PDP C2A H2A1 SING N N 5 PDP C2A H2A2 SING N N 6 PDP C2A H2A3 SING N N 7 PDP C3 O3 SING N N 8 PDP C3 C4 DOUB Y N 9 PDP O3 HO3 SING N N 10 PDP C4 C4A SING N N 11 PDP C4 C5 SING Y N 12 PDP C4A O4A DOUB N N 13 PDP C4A H4A SING N N 14 PDP C5 C6 DOUB Y N 15 PDP C5 C5A SING N N 16 PDP C6 H6 SING N N 17 PDP C5A O5A SING N N 18 PDP C5A H5A1 SING N N 19 PDP C5A H5A2 SING N N 20 PDP O5A PA SING N N 21 PDP PA O1A DOUB N N 22 PDP PA O3A SING N N 23 PDP PA O2A SING N N 24 PDP O3A PB SING N N 25 PDP O2A HOA2 SING N N 26 PDP PB O1B DOUB N N 27 PDP PB O2B SING N N 28 PDP PB O3B SING N N 29 PDP O2B HOB2 SING N N 30 PDP O3B HOB3 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PDP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCc1cnc(c(O)c1C=O)C" PDP SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P@@](O)(=O)O[P](O)(O)=O)c(C=O)c1O" PDP SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(=O)O[P](O)(O)=O)c(C=O)c1O" PDP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)CO[P@](=O)(O)OP(=O)(O)O)C=O)O" PDP SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)OP(=O)(O)O)C=O)O" PDP InChI InChI 1.03 "InChI=1S/C8H11NO9P2/c1-5-8(11)7(3-10)6(2-9-5)4-17-20(15,16)18-19(12,13)14/h2-3,11H,4H2,1H3,(H,15,16)(H2,12,13,14)" PDP InChIKey InChI 1.03 BLPOUZDLIYAHLN-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PDP "SYSTEMATIC NAME" ACDLabs 10.04 "(4-formyl-5-hydroxy-6-methylpyridin-3-yl)methyl trihydrogen diphosphate" PDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-4-methanoyl-6-methyl-pyridin-3-yl)methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PDP "Create component" 1999-07-08 EBI PDP "Modify descriptor" 2011-06-04 RCSB #