data_PDW # _chem_comp.id PDW _chem_comp.name "methyl D-prolinate" _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-11-30 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PDW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3UQP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PDW CM CAA C 0 1 N N N N N N -26.021 -39.138 1.375 3.320 -0.263 0.048 CM PDW 1 PDW O OAR O 0 1 N N N Y N Y -24.008 -38.715 -0.368 1.195 1.103 0.731 O PDW 2 PDW CG CBG C 0 1 N N N N N N -22.152 -36.225 -1.212 -2.529 -0.847 0.448 CG PDW 3 PDW CB CBI C 0 1 N N N N N N -22.785 -36.623 0.065 -1.048 -1.239 0.265 CB PDW 4 PDW CD CBK C 0 1 N N N N N N -23.041 -35.115 -1.660 -2.669 0.526 -0.244 CD PDW 5 PDW OXT OBT O 0 1 N N N Y N Y -25.982 -38.019 0.537 1.997 -0.576 -0.460 OXT PDW 6 PDW C CCA C 0 1 N N N Y N Y -24.798 -37.755 -0.204 0.983 0.195 -0.038 C PDW 7 PDW CA CCN C 0 1 N N R Y N N -24.227 -36.389 -0.108 -0.419 -0.070 -0.523 CA PDW 8 PDW N NCS N 0 1 N N N Y Y N -24.357 -35.577 -1.309 -1.296 1.093 -0.233 N PDW 9 PDW HM1 HAA H 0 1 N N N N N N -27.002 -39.193 1.869 3.322 -0.346 1.135 HM1 PDW 10 PDW HM2 HAAA H 0 1 N N N N N N -25.859 -40.048 0.779 4.045 -0.960 -0.370 HM2 PDW 11 PDW HM3 HAAB H 0 1 N N N N N N -25.232 -39.053 2.136 3.588 0.755 -0.238 HM3 PDW 12 PDW HG2 HBG H 0 1 N N N N N N -21.121 -35.874 -1.056 -3.177 -1.581 -0.031 HG2 PDW 13 PDW HG3 HBGA H 0 1 N N N N N N -22.152 -37.054 -1.935 -2.770 -0.762 1.508 HG3 PDW 14 PDW HB2 HBI H 0 1 N N N N N N -22.592 -37.686 0.272 -0.563 -1.347 1.235 HB2 PDW 15 PDW HB3 HBIA H 0 1 N N N N N N -22.395 -36.012 0.892 -0.970 -2.165 -0.304 HB3 PDW 16 PDW HD2 HBK H 0 1 N N N N N N -22.799 -34.180 -1.133 -3.020 0.400 -1.269 HD2 PDW 17 PDW HD3 HBKA H 0 1 N N N N N N -22.956 -34.957 -2.745 -3.350 1.167 0.316 HD3 PDW 18 PDW HA HCN H 0 1 N N N Y N N -24.640 -35.862 0.765 -0.415 -0.290 -1.590 HA PDW 19 PDW H H2 H 0 1 N Y N Y Y N -24.957 -34.797 -1.131 -1.194 1.807 -0.938 H PDW 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PDW CM OXT SING N N 1 PDW O C DOUB N N 2 PDW CG CB SING N N 3 PDW CG CD SING N N 4 PDW CB CA SING N N 5 PDW CD N SING N N 6 PDW OXT C SING N N 7 PDW C CA SING N N 8 PDW CA N SING N N 9 PDW CM HM1 SING N N 10 PDW CM HM2 SING N N 11 PDW CM HM3 SING N N 12 PDW CG HG2 SING N N 13 PDW CG HG3 SING N N 14 PDW CB HB2 SING N N 15 PDW CB HB3 SING N N 16 PDW CD HD2 SING N N 17 PDW CD HD3 SING N N 18 PDW CA HA SING N N 19 PDW N H SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PDW SMILES ACDLabs 12.01 "O=C(OC)C1NCCC1" PDW InChI InChI 1.03 "InChI=1S/C6H11NO2/c1-9-6(8)5-3-2-4-7-5/h5,7H,2-4H2,1H3/t5-/m1/s1" PDW InChIKey InChI 1.03 BLWYXBNNBYXPPL-RXMQYKEDSA-N PDW SMILES_CANONICAL CACTVS 3.370 "COC(=O)[C@H]1CCCN1" PDW SMILES CACTVS 3.370 "COC(=O)[CH]1CCCN1" PDW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COC(=O)[C@H]1CCCN1" PDW SMILES "OpenEye OEToolkits" 1.7.6 "COC(=O)C1CCCN1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PDW "SYSTEMATIC NAME" ACDLabs 12.01 "methyl D-prolinate" PDW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl (2R)-pyrrolidine-2-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PDW "Create component" 2011-11-30 PDBJ PDW "Initial release" 2012-11-16 RCSB PDW "Modify backbone" 2023-11-03 PDBE #