data_PDY
#
_chem_comp.id PDY
_chem_comp.name "N~7~-(4-ethoxyphenyl)-6-methyl-N~5~-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H26 N6 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "{5-[((3S)(3-piperidyl))amino]-6-methyl(pyrazolo[1,5-a]pyrimidin-7-yl)}(4-ethoxyphenyl)amine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-05-19
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 366.460
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PDY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3A2C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PDY C25 C25 C 0 1 N N N 60.772 143.245 98.868 -5.158 -1.439 -1.462 C25 PDY 1
PDY C26 C26 C 0 1 N N N 59.788 142.310 98.160 -6.434 -0.765 -1.975 C26 PDY 2
PDY C23 C23 C 0 1 N N N 58.658 143.112 97.505 -7.236 -0.231 -0.785 C23 PDY 3
PDY N12 N12 N 0 1 N N N 59.192 144.114 96.568 -6.419 0.733 -0.036 N12 PDY 4
PDY C22 C22 C 0 1 N N N 60.093 145.039 97.275 -5.212 0.097 0.506 C22 PDY 5
PDY C15 C15 C 0 1 N N S 61.288 144.291 97.877 -4.350 -0.428 -0.645 C15 PDY 6
PDY N10 N10 N 0 1 N N N 62.088 145.281 98.614 -3.155 -1.081 -0.103 N10 PDY 7
PDY C4 C4 C 0 1 Y N N 63.127 145.861 98.023 -2.036 -0.328 0.210 C4 PDY 8
PDY C3 C3 C 0 1 Y N N 63.661 147.008 98.604 -0.931 -0.938 0.825 C3 PDY 9
PDY C14 C14 C 0 1 N N N 63.135 147.396 99.991 -0.955 -2.410 1.145 C14 PDY 10
PDY N6 N6 N 0 1 Y N N 63.453 145.508 96.769 -2.009 0.963 -0.075 N6 PDY 11
PDY C5 C5 C 0 1 Y N N 64.292 146.242 96.030 -0.936 1.711 0.220 C5 PDY 12
PDY C8 C8 C 0 1 Y N N 64.872 145.976 94.860 -0.653 3.057 0.034 C8 PDY 13
PDY C11 C11 C 0 1 Y N N 65.920 147.065 94.637 0.622 3.292 0.534 C11 PDY 14
PDY N7 N7 N 0 1 Y N N 65.809 147.793 95.909 1.109 2.167 1.004 N7 PDY 15
PDY N2 N2 N 0 1 Y N N 64.849 147.408 96.578 0.160 1.154 0.824 N2 PDY 16
PDY C1 C1 C 0 1 Y N N 64.508 147.831 97.870 0.166 -0.184 1.128 C1 PDY 17
PDY N9 N9 N 0 1 N N N 65.315 148.769 98.372 1.265 -0.760 1.732 N9 PDY 18
PDY C13 C13 C 0 1 Y N N 65.705 148.882 99.633 2.519 -0.692 1.114 C13 PDY 19
PDY C17 C17 C 0 1 Y N N 66.205 150.074 100.138 3.649 -1.139 1.785 C17 PDY 20
PDY C20 C20 C 0 1 Y N N 66.584 150.114 101.474 4.886 -1.072 1.175 C20 PDY 21
PDY C18 C18 C 0 1 Y N N 65.536 147.774 100.448 2.632 -0.183 -0.173 C18 PDY 22
PDY C19 C19 C 0 1 Y N N 65.948 147.804 101.769 3.870 -0.116 -0.782 C19 PDY 23
PDY C16 C16 C 0 1 Y N N 66.481 148.979 102.269 5.000 -0.558 -0.109 C16 PDY 24
PDY O21 O21 O 0 1 N N N 66.967 148.970 103.534 6.218 -0.492 -0.709 O21 PDY 25
PDY C24 C24 C 0 1 N N N 66.193 149.880 104.323 6.261 0.048 -2.031 C24 PDY 26
PDY C27 C27 C 0 1 N N N 67.132 150.336 105.441 7.705 0.042 -2.538 C27 PDY 27
PDY H25 H25 H 0 1 N N N 60.262 143.750 99.701 -5.423 -2.289 -0.832 H25 PDY 28
PDY H25A H25A H 0 0 N N N 61.619 142.659 99.256 -4.563 -1.783 -2.308 H25A PDY 29
PDY H26 H26 H 0 1 N N N 60.324 141.744 97.384 -6.170 0.060 -2.636 H26 PDY 30
PDY H26A H26A H 0 0 N N N 59.353 141.624 98.902 -7.035 -1.492 -2.521 H26A PDY 31
PDY H23 H23 H 0 1 N N N 58.004 142.421 96.953 -8.138 0.262 -1.148 H23 PDY 32
PDY H23A H23A H 0 0 N N N 58.097 143.635 98.294 -7.512 -1.059 -0.132 H23A PDY 33
PDY HN12 HN12 H 0 0 N N N 59.700 143.649 95.842 -6.182 1.529 -0.609 HN12 PDY 34
PDY H22 H22 H 0 1 N N N 60.464 145.791 96.563 -4.643 0.827 1.081 H22 PDY 35
PDY H22A H22A H 0 0 N N N 59.533 145.519 98.091 -5.497 -0.733 1.153 H22A PDY 36
PDY H15 H15 H 0 1 N N N 61.881 143.796 97.094 -4.052 0.402 -1.285 H15 PDY 37
PDY HN10 HN10 H 0 0 N N N 61.460 146.019 98.860 -3.148 -2.041 0.036 HN10 PDY 38
PDY H14 H14 H 0 1 N N N 63.979 147.489 100.691 -1.869 -2.853 0.750 H14 PDY 39
PDY H14A H14A H 0 0 N N N 62.605 148.358 99.926 -0.090 -2.895 0.691 H14A PDY 40
PDY H14B H14B H 0 0 N N N 62.444 146.620 100.351 -0.923 -2.547 2.226 H14B PDY 41
PDY H8 H8 H 0 1 N N N 64.646 145.152 94.199 -1.305 3.790 -0.418 H8 PDY 42
PDY H11 H11 H 0 1 N N N 66.560 147.248 93.787 1.130 4.245 0.535 H11 PDY 43
PDY HN9 HN9 H 0 1 N N N 65.660 149.455 97.732 1.168 -1.211 2.585 HN9 PDY 44
PDY H17 H17 H 0 1 N N N 66.297 150.947 99.509 3.561 -1.539 2.785 H17 PDY 45
PDY H20 H20 H 0 1 N N N 66.961 151.033 101.897 5.765 -1.420 1.697 H20 PDY 46
PDY H18 H18 H 0 1 N N N 65.079 146.880 100.049 1.753 0.161 -0.697 H18 PDY 47
PDY H19 H19 H 0 1 N N N 65.855 146.929 102.396 3.959 0.280 -1.783 H19 PDY 48
PDY H24 H24 H 0 1 N N N 65.856 150.735 103.719 5.641 -0.558 -2.692 H24 PDY 49
PDY H24A H24A H 0 0 N N N 65.282 149.407 104.719 5.885 1.071 -2.018 H24A PDY 50
PDY H27 H27 H 0 1 N N N 68.151 150.445 105.043 8.325 0.648 -1.877 H27 PDY 51
PDY H27A H27A H 0 0 N N N 66.788 151.303 105.837 8.080 -0.981 -2.551 H27A PDY 52
PDY H27B H27B H 0 0 N N N 67.132 149.588 106.247 7.738 0.454 -3.546 H27B PDY 53
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PDY C25 C26 SING N N 1
PDY C25 C15 SING N N 2
PDY C26 C23 SING N N 3
PDY C23 N12 SING N N 4
PDY N12 C22 SING N N 5
PDY C22 C15 SING N N 6
PDY C15 N10 SING N N 7
PDY N10 C4 SING N N 8
PDY C4 C3 SING Y N 9
PDY C4 N6 DOUB Y N 10
PDY C3 C14 SING N N 11
PDY C3 C1 DOUB Y N 12
PDY N6 C5 SING Y N 13
PDY C5 C8 DOUB Y N 14
PDY C5 N2 SING Y N 15
PDY C8 C11 SING Y N 16
PDY C11 N7 DOUB Y N 17
PDY N7 N2 SING Y N 18
PDY N2 C1 SING Y N 19
PDY C1 N9 SING N N 20
PDY N9 C13 SING N N 21
PDY C13 C17 DOUB Y N 22
PDY C13 C18 SING Y N 23
PDY C17 C20 SING Y N 24
PDY C20 C16 DOUB Y N 25
PDY C18 C19 DOUB Y N 26
PDY C19 C16 SING Y N 27
PDY C16 O21 SING N N 28
PDY O21 C24 SING N N 29
PDY C24 C27 SING N N 30
PDY C25 H25 SING N N 31
PDY C25 H25A SING N N 32
PDY C26 H26 SING N N 33
PDY C26 H26A SING N N 34
PDY C23 H23 SING N N 35
PDY C23 H23A SING N N 36
PDY N12 HN12 SING N N 37
PDY C22 H22 SING N N 38
PDY C22 H22A SING N N 39
PDY C15 H15 SING N N 40
PDY N10 HN10 SING N N 41
PDY C14 H14 SING N N 42
PDY C14 H14A SING N N 43
PDY C14 H14B SING N N 44
PDY C8 H8 SING N N 45
PDY C11 H11 SING N N 46
PDY N9 HN9 SING N N 47
PDY C17 H17 SING N N 48
PDY C20 H20 SING N N 49
PDY C18 H18 SING N N 50
PDY C19 H19 SING N N 51
PDY C24 H24 SING N N 52
PDY C24 H24A SING N N 53
PDY C27 H27 SING N N 54
PDY C27 H27A SING N N 55
PDY C27 H27B SING N N 56
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PDY SMILES ACDLabs 10.04 "n3c(NC1CCCNC1)c(c(Nc2ccc(OCC)cc2)n4nccc34)C"
PDY SMILES_CANONICAL CACTVS 3.341 "CCOc1ccc(Nc2n3nccc3nc(N[C@H]4CCCNC4)c2C)cc1"
PDY SMILES CACTVS 3.341 "CCOc1ccc(Nc2n3nccc3nc(N[CH]4CCCNC4)c2C)cc1"
PDY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOc1ccc(cc1)Nc2c(c(nc3n2ncc3)N[C@H]4CCCNC4)C"
PDY SMILES "OpenEye OEToolkits" 1.5.0 "CCOc1ccc(cc1)Nc2c(c(nc3n2ncc3)NC4CCCNC4)C"
PDY InChI InChI 1.03 "InChI=1S/C20H26N6O/c1-3-27-17-8-6-15(7-9-17)24-20-14(2)19(23-16-5-4-11-21-13-16)25-18-10-12-22-26(18)20/h6-10,12,16,21,24H,3-5,11,13H2,1-2H3,(H,23,25)/t16-/m0/s1"
PDY InChIKey InChI 1.03 WJOUGMPFYANZMI-INIZCTEOSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PDY "SYSTEMATIC NAME" ACDLabs 10.04 "N~7~-(4-ethoxyphenyl)-6-methyl-N~5~-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine"
PDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N'-(4-ethoxyphenyl)-6-methyl-N-[(3S)-piperidin-3-yl]pyrazolo[1,5-a]pyrimidine-5,7-diamine"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PDY "Create component" 2009-05-19 PDBJ
PDY "Modify aromatic_flag" 2011-06-04 RCSB
PDY "Modify descriptor" 2011-06-04 RCSB
PDY "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PDY
_pdbx_chem_comp_synonyms.name "{5-[((3S)(3-piperidyl))amino]-6-methyl(pyrazolo[1,5-a]pyrimidin-7-yl)}(4-ethoxyphenyl)amine"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##