data_PEX # _chem_comp.id PEX _chem_comp.name 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H49 N O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2004-08-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PEX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1U52 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PEX O1 O1 O -1 1 N N N N N N 10.638 28.545 11.646 -0.855 4.031 0.757 O1 PEX 1 PEX O2 O2 O 0 1 N N N N N N 11.416 26.912 9.587 1.233 4.404 -0.610 O2 PEX 2 PEX P1 P1 P 0 1 N N N N N N 11.837 28.256 10.501 0.480 3.404 0.296 P1 PEX 3 PEX O3 O3 O 0 1 N N N N N N 12.070 29.559 9.517 0.183 2.053 -0.527 O3 PEX 4 PEX C1 C1 C 0 1 N N N N N N 11.112 29.698 8.482 -0.715 2.401 -1.583 C1 PEX 5 PEX C2 C2 C 0 1 N N R N N N 11.618 29.754 7.064 -1.040 1.155 -2.408 C2 PEX 6 PEX C3 C3 C 0 1 N N N N N N 11.934 28.321 6.674 0.260 0.515 -2.899 C3 PEX 7 PEX O4 O4 O 0 1 N N N N N N 11.883 27.919 5.270 1.127 0.249 -1.765 O4 PEX 8 PEX C4 C4 C 0 1 N N N N N N 12.001 26.540 4.864 2.330 -0.315 -1.958 C4 PEX 9 PEX O5 O5 O 0 1 N N N N N N 12.790 26.360 3.735 2.692 -0.600 -3.075 O5 PEX 10 PEX C5 C5 C 0 1 N N N N N N 11.347 25.366 5.551 3.230 -0.591 -0.781 C5 PEX 11 PEX C6 C6 C 0 1 N N N N N N 12.403 24.365 6.063 4.530 -1.231 -1.272 C6 PEX 12 PEX C7 C7 C 0 1 N N N N N N 13.165 24.713 7.356 5.443 -1.512 -0.077 C7 PEX 13 PEX C8 C8 C 0 1 N N N N N N 12.958 23.743 8.547 6.743 -2.151 -0.568 C8 PEX 14 PEX C9 C9 C 0 1 N N N N N N 14.195 22.921 9.008 7.657 -2.432 0.627 C9 PEX 15 PEX C10 C10 C 0 1 N N N N N N 14.177 21.419 8.602 8.957 -3.072 0.136 C10 PEX 16 PEX C11 C11 C 0 1 N N N N N N 13.878 21.138 7.117 9.870 -3.352 1.331 C11 PEX 17 PEX C12 C12 C 0 1 N N N N N N 12.785 20.076 6.860 11.170 -3.992 0.840 C12 PEX 18 PEX C13 C13 C 0 1 N N N N N N 11.436 20.639 6.386 12.084 -4.273 2.035 C13 PEX 19 PEX O6 O6 O 0 1 N N N N N N 10.626 30.228 6.126 -1.766 0.205 -1.584 O6 PEX 20 PEX C14 C14 C 0 1 N N N N N N 9.275 29.673 5.941 -3.107 0.247 -1.534 C14 PEX 21 PEX O7 O7 O 0 1 N N N N N N 8.801 28.506 6.672 -3.709 1.075 -2.175 O7 PEX 22 PEX C15 C15 C 0 1 N N N N N N 8.338 30.349 4.948 -3.860 -0.739 -0.679 C15 PEX 23 PEX C16 C16 C 0 1 N N N N N N 8.587 29.914 3.503 -5.363 -0.476 -0.801 C16 PEX 24 PEX C17 C17 C 0 1 N N N N N N 8.096 30.859 2.406 -6.128 -1.477 0.067 C17 PEX 25 PEX C18 C18 C 0 1 N N N N N N 6.578 30.916 2.257 -7.630 -1.213 -0.054 C18 PEX 26 PEX C19 C19 C 0 1 N N N N N N 6.052 30.360 0.935 -8.395 -2.214 0.814 C19 PEX 27 PEX C20 C20 C 0 1 N N N N N N 4.555 30.557 0.731 -9.897 -1.951 0.693 C20 PEX 28 PEX C21 C21 C 0 1 N N N N N N 3.697 29.980 1.854 -10.662 -2.952 1.561 C21 PEX 29 PEX C22 C22 C 0 1 N N N N N N 2.389 30.732 2.122 -12.164 -2.689 1.440 C22 PEX 30 PEX C23 C23 C 0 1 N N N N N N 1.504 30.079 3.200 -12.929 -3.690 2.308 C23 PEX 31 PEX O8 O8 O 0 1 N N N N N N 13.257 27.955 11.301 1.385 3.061 1.583 O8 PEX 32 PEX C24 C24 C 0 1 N N N N N N 13.672 26.584 11.448 1.514 4.271 2.331 C24 PEX 33 PEX C25 C25 C 0 1 N N N N N N 14.244 26.460 12.854 2.367 4.013 3.575 C25 PEX 34 PEX N1 N1 N 0 1 N N N N N N 13.503 25.593 13.743 3.734 3.660 3.167 N1 PEX 35 PEX H1 H1 H 0 1 N N N N N N 10.524 30.610 8.710 -0.249 3.150 -2.224 H1 PEX 36 PEX H2 H2 H 0 1 N N N N N N 10.394 28.859 8.594 -1.634 2.807 -1.159 H2 PEX 37 PEX H3 H3 H 0 1 N N N N N N 12.450 30.470 7.004 -1.653 1.436 -3.265 H3 PEX 38 PEX H4 H4 H 0 1 N N N N N N 12.950 28.067 7.041 0.762 1.194 -3.588 H4 PEX 39 PEX H5 H5 H 0 1 N N N N N N 11.249 27.642 7.223 0.034 -0.421 -3.411 H5 PEX 40 PEX H6 H6 H 0 1 N N N N N N 10.642 24.868 4.852 2.728 -1.270 -0.092 H6 PEX 41 PEX H7 H7 H 0 1 N N N N N N 10.715 25.727 6.388 3.456 0.344 -0.269 H7 PEX 42 PEX H8 H8 H 0 1 N N N N N N 11.910 23.382 6.205 5.031 -0.552 -1.961 H8 PEX 43 PEX H9 H9 H 0 1 N N N N N N 13.146 24.201 5.255 4.304 -2.166 -1.784 H9 PEX 44 PEX H10 H10 H 0 1 N N N N N N 12.878 25.737 7.673 4.942 -2.191 0.612 H10 PEX 45 PEX H11 H11 H 0 1 N N N N N N 14.249 24.775 7.126 5.669 -0.576 0.435 H11 PEX 46 PEX H12 H12 H 0 1 N N N N N N 12.576 24.324 9.411 7.245 -1.472 -1.257 H12 PEX 47 PEX H13 H13 H 0 1 N N N N N N 12.140 23.038 8.289 6.517 -3.087 -1.080 H13 PEX 48 PEX H14 H14 H 0 1 N N N N N N 14.290 22.997 10.113 7.155 -3.111 1.316 H14 PEX 49 PEX H15 H15 H 0 1 N N N N N N 15.115 23.397 8.609 7.883 -1.497 1.139 H15 PEX 50 PEX H16 H16 H 0 1 N N N N N N 15.154 20.960 8.861 9.459 -2.393 -0.553 H16 PEX 51 PEX H17 H17 H 0 1 N N N N N N 13.434 20.880 9.225 8.731 -4.007 -0.376 H17 PEX 52 PEX H18 H18 H 0 1 N N N N N N 14.814 20.828 6.610 9.369 -4.032 2.020 H18 PEX 53 PEX H19 H19 H 0 1 N N N N N N 13.584 22.090 6.621 10.096 -2.417 1.843 H19 PEX 54 PEX H20 H20 H 0 1 N N N N N N 13.153 19.345 6.111 11.672 -3.313 0.151 H20 PEX 55 PEX H21 H21 H 0 1 N N N N N N 12.623 19.486 7.785 10.944 -4.928 0.328 H21 PEX 56 PEX H22 H22 H 0 1 N N N N N N 10.882 19.865 5.814 12.310 -3.337 2.547 H22 PEX 57 PEX H23 H23 H 0 1 N N N N N N 10.828 20.947 7.258 11.582 -4.952 2.724 H23 PEX 58 PEX H24 H24 H 0 1 N N N N N N 11.602 21.519 5.733 13.010 -4.729 1.685 H24 PEX 59 PEX H25 H25 H 0 1 N N N N N N 8.443 31.452 5.030 -3.641 -1.753 -1.015 H25 PEX 60 PEX H26 H26 H 0 1 N N N N N N 7.286 30.138 5.227 -3.554 -0.626 0.361 H26 PEX 61 PEX H27 H27 H 0 1 N N N N N N 9.676 29.746 3.366 -5.582 0.538 -0.465 H27 PEX 62 PEX H28 H28 H 0 1 N N N N N N 8.122 28.918 3.349 -5.668 -0.589 -1.841 H28 PEX 63 PEX H29 H29 H 0 1 N N N N N N 8.548 30.561 1.437 -5.908 -2.491 -0.268 H29 PEX 64 PEX H30 H30 H 0 1 N N N N N N 8.484 31.881 2.602 -5.822 -1.364 1.108 H30 PEX 65 PEX H31 H31 H 0 1 N N N N N N 6.105 30.368 3.098 -7.849 -0.200 0.281 H31 PEX 66 PEX H32 H32 H 0 1 N N N N N N 6.239 31.967 2.372 -7.936 -1.326 -1.094 H32 PEX 67 PEX H33 H33 H 0 1 N N N N N N 6.292 29.279 0.866 -8.175 -3.228 0.479 H33 PEX 68 PEX H34 H34 H 0 1 N N N N N N 6.602 30.830 0.091 -8.089 -2.102 1.854 H34 PEX 69 PEX H35 H35 H 0 1 N N N N N N 4.339 31.641 0.620 -10.116 -0.937 1.028 H35 PEX 70 PEX H36 H36 H 0 1 N N N N N N 4.252 30.104 -0.235 -10.203 -2.064 -0.347 H36 PEX 71 PEX H37 H37 H 0 1 N N N N N N 4.297 29.948 2.789 -10.443 -3.966 1.226 H37 PEX 72 PEX H38 H38 H 0 1 N N N N N N 3.468 28.919 1.627 -10.356 -2.839 2.601 H38 PEX 73 PEX H39 H39 H 0 1 N N N N N N 2.621 31.777 2.417 -12.384 -1.675 1.775 H39 PEX 74 PEX H40 H40 H 0 1 N N N N N N 1.816 30.821 1.176 -12.470 -2.801 0.400 H40 PEX 75 PEX H41 H41 H 0 1 N N N N N N 0.914 30.854 3.729 -12.624 -3.577 3.348 H41 PEX 76 PEX H42 H42 H 0 1 N N N N N N 0.805 29.355 2.728 -14.000 -3.502 2.221 H42 PEX 77 PEX H43 H43 H 0 1 N N N N N N 2.136 29.541 3.936 -12.710 -4.703 1.973 H43 PEX 78 PEX H44 H44 H 0 1 N N N N N N 12.815 25.902 11.273 1.993 5.031 1.714 H44 PEX 79 PEX H45 H45 H 0 1 N N N N N N 14.413 26.322 10.663 0.527 4.619 2.634 H45 PEX 80 PEX H46 H46 H 0 1 N N N N N N 14.310 27.460 13.334 2.393 4.912 4.191 H46 PEX 81 PEX H47 H47 H 0 1 N N N N N N 15.290 26.091 12.816 1.936 3.192 4.147 H47 PEX 82 PEX H48 H48 H 0 1 N N N N N N 14.020 25.518 14.712 4.128 4.482 2.734 H48 PEX 83 PEX H49 H49 H 0 1 N N N N N N 12.491 25.994 13.905 4.257 3.500 4.014 H49 PEX 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PEX O1 P1 SING N N 1 PEX O2 P1 DOUB N N 2 PEX P1 O3 SING N N 3 PEX P1 O8 SING N N 4 PEX O3 C1 SING N N 5 PEX C1 C2 SING N N 6 PEX C1 H1 SING N N 7 PEX C1 H2 SING N N 8 PEX C2 C3 SING N N 9 PEX C2 O6 SING N N 10 PEX C2 H3 SING N N 11 PEX C3 O4 SING N N 12 PEX C3 H4 SING N N 13 PEX C3 H5 SING N N 14 PEX O4 C4 SING N N 15 PEX C4 O5 DOUB N N 16 PEX C4 C5 SING N N 17 PEX C5 C6 SING N N 18 PEX C5 H6 SING N N 19 PEX C5 H7 SING N N 20 PEX C6 C7 SING N N 21 PEX C6 H8 SING N N 22 PEX C6 H9 SING N N 23 PEX C7 C8 SING N N 24 PEX C7 H10 SING N N 25 PEX C7 H11 SING N N 26 PEX C8 C9 SING N N 27 PEX C8 H12 SING N N 28 PEX C8 H13 SING N N 29 PEX C9 C10 SING N N 30 PEX C9 H14 SING N N 31 PEX C9 H15 SING N N 32 PEX C10 C11 SING N N 33 PEX C10 H16 SING N N 34 PEX C10 H17 SING N N 35 PEX C11 C12 SING N N 36 PEX C11 H18 SING N N 37 PEX C11 H19 SING N N 38 PEX C12 C13 SING N N 39 PEX C12 H20 SING N N 40 PEX C12 H21 SING N N 41 PEX C13 H22 SING N N 42 PEX C13 H23 SING N N 43 PEX C13 H24 SING N N 44 PEX O6 C14 SING N N 45 PEX C14 O7 DOUB N N 46 PEX C14 C15 SING N N 47 PEX C15 C16 SING N N 48 PEX C15 H25 SING N N 49 PEX C15 H26 SING N N 50 PEX C16 C17 SING N N 51 PEX C16 H27 SING N N 52 PEX C16 H28 SING N N 53 PEX C17 C18 SING N N 54 PEX C17 H29 SING N N 55 PEX C17 H30 SING N N 56 PEX C18 C19 SING N N 57 PEX C18 H31 SING N N 58 PEX C18 H32 SING N N 59 PEX C19 C20 SING N N 60 PEX C19 H33 SING N N 61 PEX C19 H34 SING N N 62 PEX C20 C21 SING N N 63 PEX C20 H35 SING N N 64 PEX C20 H36 SING N N 65 PEX C21 C22 SING N N 66 PEX C21 H37 SING N N 67 PEX C21 H38 SING N N 68 PEX C22 C23 SING N N 69 PEX C22 H39 SING N N 70 PEX C22 H40 SING N N 71 PEX C23 H41 SING N N 72 PEX C23 H42 SING N N 73 PEX C23 H43 SING N N 74 PEX O8 C24 SING N N 75 PEX C24 C25 SING N N 76 PEX C24 H44 SING N N 77 PEX C24 H45 SING N N 78 PEX C25 N1 SING N N 79 PEX C25 H46 SING N N 80 PEX C25 H47 SING N N 81 PEX N1 H48 SING N N 82 PEX N1 H49 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PEX SMILES ACDLabs 10.04 "O=C(OCC(OC(=O)CCCCCCCCC)COP([O-])(=O)OCCN)CCCCCCCCC" PEX SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCC(=O)OC[C@H](CO[P]([O-])(=O)OCCN)OC(=O)CCCCCCCCC" PEX SMILES CACTVS 3.341 "CCCCCCCCCC(=O)OC[CH](CO[P]([O-])(=O)OCCN)OC(=O)CCCCCCCCC" PEX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC(=O)OC[C@H](CO[P@](=O)([O-])OCCN)OC(=O)CCCCCCCCC" PEX SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCC(=O)OCC(COP(=O)([O-])OCCN)OC(=O)CCCCCCCCC" PEX InChI InChI 1.03 "InChI=1S/C25H50NO8P/c1-3-5-7-9-11-13-15-17-24(27)31-21-23(22-33-35(29,30)32-20-19-26)34-25(28)18-16-14-12-10-8-6-4-2/h23H,3-22,26H2,1-2H3,(H,29,30)/p-1/t23-/m1/s1" PEX InChIKey InChI 1.03 KKOSJVWUOHEQKA-HSZRJFAPSA-M # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PEX "SYSTEMATIC NAME" ACDLabs 10.04 "2-aminoethyl (2R)-2,3-bis(decanoyloxy)propyl phosphate" PEX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-aminoethyl [(2R)-2,3-di(decanoyloxy)propyl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PEX "Create component" 2004-08-02 RCSB PEX "Modify descriptor" 2011-06-04 RCSB PEX "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PEX _pdbx_chem_comp_pcm.modified_residue_id PYR _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position N-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom N1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom CA _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #