data_PF3
#
_chem_comp.id PF3
_chem_comp.name "(2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN-2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H20 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PF-00356231; 3-PHENYL-3-({[4-(4-PYRIDIN-4-YLPHENYL)THIEN-2-YL]CARBONYL}AMINO)PROPANOIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-12-12
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 428.503
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PF3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1UTZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PF3 S1 S1 S 0 1 Y N N 42.582 53.491 19.938 1.972 -0.931 -0.583 S1 PF3 1
PF3 C1 C1 C 0 1 Y N N 41.481 54.654 19.217 0.383 -0.135 -0.730 C1 PF3 2
PF3 C2 C2 C 0 1 Y N N 40.198 54.289 19.366 0.022 0.047 0.590 C2 PF3 3
PF3 C3 C3 C 0 1 Y N N 40.044 53.017 20.083 0.904 -0.402 1.556 C3 PF3 4
PF3 C4 C4 C 0 1 Y N N 41.230 52.495 20.438 2.083 -0.991 1.144 C4 PF3 5
PF3 C5 C5 C 0 1 Y N N 38.737 52.439 20.383 0.594 -0.251 2.998 C5 PF3 6
PF3 C6 C6 C 0 1 Y N N 37.791 52.162 19.367 1.599 0.110 3.893 C6 PF3 7
PF3 C7 C7 C 0 1 Y N N 36.524 51.636 19.706 1.311 0.250 5.233 C7 PF3 8
PF3 C8 C8 C 0 1 Y N N 36.166 51.373 21.058 0.013 0.030 5.694 C8 PF3 9
PF3 C9 C9 C 0 1 Y N N 37.128 51.648 22.056 -0.992 -0.330 4.798 C9 PF3 10
PF3 C10 C10 C 0 1 Y N N 38.389 52.171 21.729 -0.705 -0.465 3.458 C10 PF3 11
PF3 C11 C11 C 0 1 Y N N 34.799 50.834 21.427 -0.296 0.181 7.136 C11 PF3 12
PF3 C12 C12 C 0 1 Y N N 34.290 50.998 22.738 -1.492 0.772 7.556 C12 PF3 13
PF3 C13 C13 C 0 1 Y N N 33.014 50.500 23.059 -1.741 0.891 8.907 C13 PF3 14
PF3 N1 N1 N 0 1 Y N N 32.227 49.854 22.157 -0.869 0.458 9.797 N1 PF3 15
PF3 C14 C14 C 0 1 Y N N 32.721 49.698 20.896 0.270 -0.105 9.444 C14 PF3 16
PF3 C15 C15 C 0 1 Y N N 33.989 50.170 20.495 0.596 -0.269 8.113 C15 PF3 17
PF3 C16 C16 C 0 1 N N N 41.913 55.915 18.569 -0.350 0.235 -1.944 C16 PF3 18
PF3 O1 O1 O 0 1 N N N 43.077 56.257 18.759 -1.435 0.779 -1.857 O1 PF3 19
PF3 N2 N2 N 0 1 N N N 41.001 56.636 17.863 0.177 -0.024 -3.157 N2 PF3 20
PF3 C17 C17 C 0 1 N N R 41.246 57.958 17.262 -0.602 0.243 -4.368 C17 PF3 21
PF3 C18 C18 C 0 1 N N N 39.825 58.484 16.914 -1.502 -0.956 -4.671 C18 PF3 22
PF3 C19 C19 C 0 1 N N N 38.812 58.391 18.091 -2.409 -0.624 -5.827 C19 PF3 23
PF3 O2 O2 O 0 1 N N N 38.994 59.084 19.088 -2.419 0.493 -6.286 O2 PF3 24
PF3 O3 O3 O 0 1 N N N 37.864 57.613 17.996 -3.206 -1.570 -6.348 O3 PF3 25
PF3 C20 C20 C 0 1 Y N N 42.162 58.027 16.013 0.332 0.475 -5.526 C20 PF3 26
PF3 C21 C21 C 0 1 Y N N 42.463 59.312 15.442 0.306 1.679 -6.205 C21 PF3 27
PF3 C22 C22 C 0 1 Y N N 43.300 59.439 14.308 1.164 1.892 -7.268 C22 PF3 28
PF3 C23 C23 C 0 1 Y N N 43.857 58.282 13.714 2.048 0.901 -7.652 C23 PF3 29
PF3 C24 C24 C 0 1 Y N N 43.573 57.012 14.255 2.075 -0.302 -6.973 C24 PF3 30
PF3 C25 C25 C 0 1 Y N N 42.738 56.886 15.390 1.220 -0.513 -5.907 C25 PF3 31
PF3 H2 H2 H 0 1 N N N 39.348 54.883 18.989 -0.913 0.515 0.858 H2 PF3 32
PF3 H4 H4 H 0 1 N N N 41.340 51.543 20.985 2.880 -1.393 1.752 H4 PF3 33
PF3 H6 H6 H 0 1 N N N 38.043 52.357 18.311 2.604 0.280 3.537 H6 PF3 34
PF3 H7 H7 H 0 1 N N N 35.796 51.424 18.905 2.090 0.530 5.927 H7 PF3 35
PF3 H9 H9 H 0 1 N N N 36.883 51.448 23.113 -1.997 -0.501 5.155 H9 PF3 36
PF3 H10 H10 H 0 1 N N N 39.118 52.376 22.531 -1.484 -0.745 2.764 H10 PF3 37
PF3 H12 H12 H 0 1 N N N 34.892 51.514 23.505 -2.210 1.129 6.832 H12 PF3 38
PF3 H13 H13 H 0 1 N N N 32.636 50.639 24.086 -2.661 1.346 9.241 H13 PF3 39
PF3 H14 H14 H 0 1 N N N 32.097 49.176 20.151 0.955 -0.445 10.206 H14 PF3 40
PF3 H15 H15 H 0 1 N N N 34.339 50.018 19.460 1.530 -0.731 7.831 H15 PF3 41
PF3 HA HA H 0 1 N N N 40.074 56.229 17.740 1.073 -0.389 -3.228 HA PF3 42
PF3 H17 H17 H 0 1 N N N 41.679 58.621 18.047 -1.218 1.129 -4.215 H17 PF3 43
PF3 H181 1H18 H 0 0 N N N 39.425 57.966 16.011 -2.103 -1.190 -3.792 H181 PF3 44
PF3 H182 2H18 H 0 0 N N N 39.878 59.527 16.524 -0.884 -1.817 -4.929 H182 PF3 45
PF3 H3 H3 H 0 1 N N N 37.245 57.556 18.714 -3.789 -1.357 -7.090 H3 PF3 46
PF3 H21 H21 H 0 1 N N N 42.032 60.219 15.898 -0.383 2.453 -5.905 H21 PF3 47
PF3 H22 H22 H 0 1 N N N 43.517 60.436 13.889 1.143 2.833 -7.798 H22 PF3 48
PF3 H23 H23 H 0 1 N N N 44.511 58.374 12.831 2.718 1.067 -8.483 H23 PF3 49
PF3 H24 H24 H 0 1 N N N 44.005 56.110 13.790 2.765 -1.076 -7.273 H24 PF3 50
PF3 H25 H25 H 0 1 N N N 42.530 55.883 15.800 1.240 -1.453 -5.376 H25 PF3 51
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PF3 S1 C1 SING Y N 1
PF3 S1 C4 SING Y N 2
PF3 C1 C2 DOUB Y N 3
PF3 C1 C16 SING N N 4
PF3 C2 C3 SING Y N 5
PF3 C2 H2 SING N N 6
PF3 C3 C4 DOUB Y N 7
PF3 C3 C5 SING Y N 8
PF3 C4 H4 SING N N 9
PF3 C5 C6 DOUB Y N 10
PF3 C5 C10 SING Y N 11
PF3 C6 C7 SING Y N 12
PF3 C6 H6 SING N N 13
PF3 C7 C8 DOUB Y N 14
PF3 C7 H7 SING N N 15
PF3 C8 C9 SING Y N 16
PF3 C8 C11 SING Y N 17
PF3 C9 C10 DOUB Y N 18
PF3 C9 H9 SING N N 19
PF3 C10 H10 SING N N 20
PF3 C11 C12 DOUB Y N 21
PF3 C11 C15 SING Y N 22
PF3 C12 C13 SING Y N 23
PF3 C12 H12 SING N N 24
PF3 C13 N1 DOUB Y N 25
PF3 C13 H13 SING N N 26
PF3 N1 C14 SING Y N 27
PF3 C14 C15 DOUB Y N 28
PF3 C14 H14 SING N N 29
PF3 C15 H15 SING N N 30
PF3 C16 O1 DOUB N N 31
PF3 C16 N2 SING N N 32
PF3 N2 C17 SING N N 33
PF3 N2 HA SING N N 34
PF3 C17 C18 SING N N 35
PF3 C17 C20 SING N N 36
PF3 C17 H17 SING N N 37
PF3 C18 C19 SING N N 38
PF3 C18 H181 SING N N 39
PF3 C18 H182 SING N N 40
PF3 C19 O2 DOUB N N 41
PF3 C19 O3 SING N N 42
PF3 O3 H3 SING N N 43
PF3 C20 C21 DOUB Y N 44
PF3 C20 C25 SING Y N 45
PF3 C21 C22 SING Y N 46
PF3 C21 H21 SING N N 47
PF3 C22 C23 DOUB Y N 48
PF3 C22 H22 SING N N 49
PF3 C23 C24 SING Y N 50
PF3 C23 H23 SING N N 51
PF3 C24 C25 DOUB Y N 52
PF3 C24 H24 SING N N 53
PF3 C25 H25 SING N N 54
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PF3 SMILES ACDLabs 10.04 "O=C(O)CC(c1ccccc1)NC(=O)c4scc(c3ccc(c2ccncc2)cc3)c4"
PF3 SMILES_CANONICAL CACTVS 3.341 "OC(=O)C[C@@H](NC(=O)c1scc(c1)c2ccc(cc2)c3ccncc3)c4ccccc4"
PF3 SMILES CACTVS 3.341 "OC(=O)C[CH](NC(=O)c1scc(c1)c2ccc(cc2)c3ccncc3)c4ccccc4"
PF3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)[C@@H](CC(=O)O)NC(=O)c2cc(cs2)c3ccc(cc3)c4ccncc4"
PF3 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(CC(=O)O)NC(=O)c2cc(cs2)c3ccc(cc3)c4ccncc4"
PF3 InChI InChI 1.03 "InChI=1S/C25H20N2O3S/c28-24(29)15-22(20-4-2-1-3-5-20)27-25(30)23-14-21(16-31-23)18-8-6-17(7-9-18)19-10-12-26-13-11-19/h1-14,16,22H,15H2,(H,27,30)(H,28,29)/t22-/m1/s1"
PF3 InChIKey InChI 1.03 VMTJQZUZINLEKC-JOCHJYFZSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PF3 "SYSTEMATIC NAME" ACDLabs 10.04 "(3R)-3-phenyl-3-({[4-(4-pyridin-4-ylphenyl)thiophen-2-yl]carbonyl}amino)propanoic acid"
PF3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R)-3-phenyl-3-[[4-(4-pyridin-4-ylphenyl)thiophen-2-yl]carbonylamino]propanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PF3 "Create component" 2003-12-12 EBI
PF3 "Modify aromatic_flag" 2011-06-04 RCSB
PF3 "Modify descriptor" 2011-06-04 RCSB
PF3 "Modify synonyms" 2020-06-05 PDBE
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 PF3 PF-00356231 ? ?
2 PF3 "3-PHENYL-3-({[4-(4-PYRIDIN-4-YLPHENYL)THIEN-2-YL]CARBONYL}AMINO)PROPANOIC ACID" ? ?
##