data_PG9 # _chem_comp.id PG9 _chem_comp.name D-PHENYLGLYCINE _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H9 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-10-07 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces PGY _chem_comp.formula_weight 151.163 _chem_comp.one_letter_code G _chem_comp.three_letter_code PG9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2B4K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PG9 N N N 0 1 N N N Y Y N 29.074 45.100 189.879 -1.350 1.572 1.138 N PG9 1 PG9 CA CA C 0 1 N N R Y N N 28.803 46.460 190.450 -1.028 0.169 0.844 CA PG9 2 PG9 CB CB C 0 1 Y N N N N N 29.471 46.561 191.765 0.403 0.069 0.382 CB PG9 3 PG9 CG1 CG1 C 0 1 Y N N N N N 30.591 47.390 191.901 0.924 1.027 -0.467 CG1 PG9 4 PG9 CD1 CD1 C 0 1 Y N N N N N 31.239 47.487 193.131 2.238 0.937 -0.888 CD1 PG9 5 PG9 CE CE C 0 1 Y N N N N N 30.765 46.749 194.216 3.028 -0.116 -0.466 CE PG9 6 PG9 CD2 CD2 C 0 1 Y N N N N N 29.646 45.922 194.076 2.505 -1.077 0.379 CD2 PG9 7 PG9 CG2 CG2 C 0 1 Y N N N N N 28.999 45.827 192.851 1.193 -0.985 0.803 CG2 PG9 8 PG9 C C C 0 1 N N N Y N Y 27.315 46.700 190.553 -1.943 -0.340 -0.240 C PG9 9 PG9 O O O 0 1 N N N Y N Y 26.850 47.804 190.250 -2.514 0.441 -0.964 O PG9 10 PG9 OXT OXT O 0 1 N Y N Y N Y 26.547 45.801 190.929 -2.123 -1.660 -0.401 OXT PG9 11 PG9 H 1HN H 0 1 N N N Y Y N 28.803 44.349 190.514 -0.652 1.900 1.788 H PG9 12 PG9 H2 2HN H 0 1 N Y N Y Y N 28.613 45.030 188.972 -1.213 2.087 0.281 H2 PG9 13 PG9 HA HA H 0 1 N N N Y N N 29.213 47.251 189.779 -1.162 -0.431 1.744 HA PG9 14 PG9 HG1 HG1 H 0 1 N N N N N N 30.963 47.967 191.038 0.307 1.850 -0.797 HG1 PG9 15 PG9 HD1 HD1 H 0 1 N N N N N N 32.119 48.142 193.245 2.646 1.688 -1.548 HD1 PG9 16 PG9 HE HE H 0 1 N N N N N N 31.278 46.820 195.190 4.053 -0.188 -0.797 HE PG9 17 PG9 HD2 HD2 H 0 1 N N N N N N 29.272 45.342 194.936 3.122 -1.900 0.708 HD2 PG9 18 PG9 HG2 HG2 H 0 1 N N N N N N 28.117 45.174 192.741 0.784 -1.736 1.463 HG2 PG9 19 PG9 HXT HXT H 0 1 N Y N Y N Y 25.611 45.952 190.994 -2.710 -1.987 -1.097 HXT PG9 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PG9 N CA SING N N 1 PG9 N H SING N N 2 PG9 N H2 SING N N 3 PG9 CA CB SING N N 4 PG9 CA C SING N N 5 PG9 CA HA SING N N 6 PG9 CB CG1 SING Y N 7 PG9 CB CG2 DOUB Y N 8 PG9 CG1 CD1 DOUB Y N 9 PG9 CG1 HG1 SING N N 10 PG9 CD1 CE SING Y N 11 PG9 CD1 HD1 SING N N 12 PG9 CE CD2 DOUB Y N 13 PG9 CE HE SING N N 14 PG9 CD2 CG2 SING Y N 15 PG9 CD2 HD2 SING N N 16 PG9 CG2 HG2 SING N N 17 PG9 C O DOUB N N 18 PG9 C OXT SING N N 19 PG9 OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PG9 SMILES ACDLabs 10.04 "O=C(O)C(N)c1ccccc1" PG9 SMILES_CANONICAL CACTVS 3.341 "N[C@@H](C(O)=O)c1ccccc1" PG9 SMILES CACTVS 3.341 "N[CH](C(O)=O)c1ccccc1" PG9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)[C@H](C(=O)O)N" PG9 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(C(=O)O)N" PG9 InChI InChI 1.03 "InChI=1S/C8H9NO2/c9-7(8(10)11)6-4-2-1-3-5-6/h1-5,7H,9H2,(H,10,11)/t7-/m1/s1" PG9 InChIKey InChI 1.03 ZGUNAGUHMKGQNY-SSDOTTSWSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PG9 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R)-amino(phenyl)ethanoic acid" PG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-2-phenyl-ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PG9 "Create component" 2005-10-07 RCSB PG9 "Modify descriptor" 2011-06-04 RCSB PG9 "Modify backbone" 2023-11-03 PDBE #