data_PGG
#
_chem_comp.id PGG
_chem_comp.name PARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H15 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms N-PYRIDOXYL-3-[2-AMINO-ETHOXY-METHYLENE]ALANINE-5-MONOPHOSPHATE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-09-13
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.230
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PGG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1YEI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PGG C1 C1 C 0 1 Y N N 11.816 37.610 61.777 1.039 0.005 -3.159 C1 PGG 1
PGG C2 C2 C 0 1 Y N N 11.617 38.915 61.323 0.705 1.211 -3.773 C2 PGG 2
PGG C3 C3 C 0 1 Y N N 10.351 39.489 61.483 0.074 1.213 -4.981 C3 PGG 3
PGG C4 C4 C 0 1 Y N N 9.339 38.746 62.088 -0.240 -0.007 -5.609 C4 PGG 4
PGG C5 C5 C 0 1 Y N N 9.575 37.418 62.531 0.101 -1.221 -4.983 C5 PGG 5
PGG C6 C6 C 0 1 Y N N 10.832 36.828 62.377 0.736 -1.206 -3.777 C6 PGG 6
PGG P1 P1 P 0 1 N N R 14.280 37.613 62.636 0.516 -0.001 -0.832 P1 PGG 7
PGG O1 O1 O 0 1 N N N 13.093 37.079 61.649 1.667 0.011 -1.958 O1 PGG 8
PGG O2 O2 O 0 1 N N N 14.444 39.008 62.374 -0.412 1.302 -0.998 O2 PGG 9
PGG O3 O3 O 0 1 N N N 13.926 37.227 63.992 -0.310 -1.219 -0.986 O3 PGG 10
PGG C8 C8 C 0 1 N N N 15.696 36.728 62.144 1.284 0.005 0.821 C8 PGG 11
PGG C9 C9 C 0 1 N N N 16.110 36.895 60.699 0.191 -0.006 1.891 C9 PGG 12
PGG C10 C10 C 0 1 N N N 17.396 36.100 60.531 0.836 -0.000 3.279 C10 PGG 13
PGG C11 C11 C 0 1 N N N 17.860 35.938 59.099 -0.240 -0.012 4.333 C11 PGG 14
PGG N2 N2 N 0 1 N N N 17.556 34.776 58.484 0.094 -0.009 5.638 N2 PGG 15
PGG O6 O6 O 0 1 N N N 18.496 36.878 58.553 -1.408 -0.025 4.006 O6 PGG 16
PGG C12 C12 C 0 1 N N N 17.894 34.497 57.224 -0.952 -0.021 6.663 C12 PGG 17
PGG C13 C13 C 0 1 N N N 16.739 34.725 56.215 -0.317 -0.015 8.030 C13 PGG 18
PGG O7 O7 O 0 1 N N N 16.624 33.926 55.260 -1.088 -0.024 9.128 O7 PGG 19
PGG O8 O8 O 0 1 N N N 16.218 35.860 56.119 0.886 -0.002 8.137 O8 PGG 20
PGG N1 N1 N 1 1 N N N 8.010 39.366 62.316 -0.860 -0.013 -6.797 N1 PGG 21
PGG O4 O4 O 0 1 N N N 7.737 40.531 61.938 -1.131 -1.071 -7.338 O4 PGG 22
PGG O5 O5 O -1 1 N N N 7.170 38.714 62.913 -1.154 1.038 -7.336 O5 PGG 23
PGG H21 1H2 H 0 1 N N N 12.439 39.478 60.850 0.946 2.146 -3.289 H21 PGG 24
PGG H31 1H3 H 0 1 N N N 10.152 40.516 61.135 -0.184 2.148 -5.455 H31 PGG 25
PGG H51 1H5 H 0 1 N N N 8.767 36.834 63.003 -0.136 -2.161 -5.458 H51 PGG 26
PGG H61 1H6 H 0 1 N N N 11.037 35.797 62.712 0.999 -2.137 -3.295 H61 PGG 27
PGG HO21 1HO2 H 0 0 N N N 15.134 39.318 62.948 0.164 2.071 -0.891 HO21 PGG 28
PGG H81 1H8 H 0 1 N N N 16.551 36.977 62.814 1.894 0.902 0.934 H81 PGG 29
PGG H82 2H8 H 0 1 N N N 15.567 35.645 62.378 1.913 -0.877 0.933 H82 PGG 30
PGG H91 1H9 H 0 1 N N N 15.313 36.608 59.973 -0.417 -0.903 1.777 H91 PGG 31
PGG H92 2H9 H 0 1 N N N 16.203 37.960 60.384 -0.437 0.876 1.778 H92 PGG 32
PGG H101 1H10 H 0 0 N N N 18.208 36.543 61.152 1.445 0.896 3.392 H101 PGG 33
PGG H102 2H10 H 0 0 N N N 17.300 35.103 61.021 1.465 -0.883 3.391 H102 PGG 34
PGG HN21 1HN2 H 0 0 N N N 17.039 34.065 59.002 1.028 0.000 5.899 HN21 PGG 35
PGG H121 1H12 H 0 0 N N N 18.802 35.068 56.921 -1.561 -0.918 6.550 H121 PGG 36
PGG H122 2H12 H 0 0 N N N 18.293 33.459 57.141 -1.581 0.861 6.551 H122 PGG 37
PGG HO71 1HO7 H 0 0 N N N 15.916 34.065 54.641 -0.681 -0.020 10.005 HO71 PGG 38
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PGG C1 C2 DOUB Y N 1
PGG C1 C6 SING Y N 2
PGG C1 O1 SING N N 3
PGG C2 C3 SING Y N 4
PGG C2 H21 SING N N 5
PGG C3 C4 DOUB Y N 6
PGG C3 H31 SING N N 7
PGG C4 C5 SING Y N 8
PGG C4 N1 SING N N 9
PGG C5 C6 DOUB Y N 10
PGG C5 H51 SING N N 11
PGG C6 H61 SING N N 12
PGG P1 O1 SING N N 13
PGG P1 O2 SING N N 14
PGG P1 O3 DOUB N N 15
PGG P1 C8 SING N N 16
PGG O2 HO21 SING N N 17
PGG C8 C9 SING N N 18
PGG C8 H81 SING N N 19
PGG C8 H82 SING N N 20
PGG C9 C10 SING N N 21
PGG C9 H91 SING N N 22
PGG C9 H92 SING N N 23
PGG C10 C11 SING N N 24
PGG C10 H101 SING N N 25
PGG C10 H102 SING N N 26
PGG C11 N2 SING N N 27
PGG C11 O6 DOUB N N 28
PGG N2 C12 SING N N 29
PGG N2 HN21 SING N N 30
PGG C12 C13 SING N N 31
PGG C12 H121 SING N N 32
PGG C12 H122 SING N N 33
PGG C13 O7 SING N N 34
PGG C13 O8 DOUB N N 35
PGG O7 HO71 SING N N 36
PGG N1 O4 DOUB N N 37
PGG N1 O5 SING N N 38
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PGG SMILES ACDLabs 10.04 "O=P(Oc1ccc(cc1)[N+]([O-])=O)(O)CCCC(=O)NCC(=O)O"
PGG SMILES_CANONICAL CACTVS 3.341 "OC(=O)CNC(=O)CCC[P@](O)(=O)Oc1ccc(cc1)[N+]([O-])=O"
PGG SMILES CACTVS 3.341 "OC(=O)CNC(=O)CCC[P](O)(=O)Oc1ccc(cc1)[N+]([O-])=O"
PGG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])O[P@@](=O)(CCCC(=O)NCC(=O)O)O"
PGG SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])OP(=O)(CCCC(=O)NCC(=O)O)O"
PGG InChI InChI 1.03 "InChI=1S/C12H15N2O8P/c15-11(13-8-12(16)17)2-1-7-23(20,21)22-10-5-3-9(4-6-10)14(18)19/h3-6H,1-2,7-8H2,(H,13,15)(H,16,17)(H,20,21)"
PGG InChIKey InChI 1.03 WLNKGRQBMNPVSJ-UHFFFAOYSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PGG "SYSTEMATIC NAME" ACDLabs 10.04 "N-{4-[(R)-hydroxy(4-nitrophenoxy)phosphoryl]butanoyl}glycine"
PGG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[4-[hydroxy-(4-nitrophenoxy)phosphoryl]butanoylamino]ethanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PGG "Create component" 1999-09-13 RCSB
PGG "Modify descriptor" 2011-06-04 RCSB
PGG "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PGG
_pdbx_chem_comp_synonyms.name N-PYRIDOXYL-3-[2-AMINO-ETHOXY-METHYLENE]ALANINE-5-MONOPHOSPHATE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##