data_PHD # _chem_comp.id PHD _chem_comp.name "ASPARTYL PHOSPHATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C4 H8 N O7 P" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-10-06 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ASQ _chem_comp.formula_weight 213.083 _chem_comp.one_letter_code D _chem_comp.three_letter_code PHD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QMP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PHD N N N 0 1 N N N Y Y N 8.262 34.573 0.338 1.661 0.095 2.185 N PHD 1 PHD CA CA C 0 1 N N S Y N N 9.500 34.636 -0.389 0.224 0.373 2.311 CA PHD 2 PHD C C C 0 1 N N N Y N Y 9.915 36.114 -0.486 -0.250 -0.045 3.678 C PHD 3 PHD O O O 0 1 N N N Y N Y 9.033 36.976 -0.357 0.289 -0.963 4.250 O PHD 4 PHD CB CB C 0 1 N N N N N N 9.129 34.102 -1.787 -0.541 -0.407 1.242 CB PHD 5 PHD CG CG C 0 1 N N N N N N 10.397 34.095 -2.764 -0.066 0.012 -0.124 CG PHD 6 PHD OD1 OD1 O 0 1 N N N N N N 11.561 33.748 -2.232 -0.601 -0.545 -1.222 OD1 PHD 7 PHD OD2 OD2 O 0 1 N N N N N N 10.158 34.218 -3.941 0.796 0.850 -0.233 OD2 PHD 8 PHD P P P 0 1 N N N N N N 13.118 34.068 -2.673 -0.094 -0.096 -2.682 P PHD 9 PHD OP1 OP1 O 0 1 N N N N N N 13.862 32.794 -2.362 1.353 -0.377 -2.809 OP1 PHD 10 PHD OP2 OP2 O 0 1 N N N N N N 13.249 34.397 -4.087 -0.900 -0.919 -3.807 OP2 PHD 11 PHD OP3 OP3 O 0 1 N N N N N N 13.526 35.253 -1.827 -0.354 1.479 -2.880 OP3 PHD 12 PHD OXT OXT O 0 1 N Y N Y N Y 11.192 36.409 -0.668 -1.273 0.599 4.260 OXT PHD 13 PHD H2 2H H 0 1 N Y N Y Y N 7.986 33.592 0.402 1.912 0.293 1.228 H2 PHD 14 PHD H 1H H 0 1 N N N Y Y N 7.534 35.162 -0.067 1.776 -0.898 2.315 H PHD 15 PHD HA HA H 0 1 N N N Y N N 10.335 34.063 0.076 0.048 1.441 2.177 HA PHD 16 PHD HB2 2HB H 0 1 N N N N N N 8.653 33.095 -1.727 -0.365 -1.475 1.376 HB2 PHD 17 PHD HB3 1HB H 0 1 N N N N N N 8.276 34.668 -2.228 -1.607 -0.201 1.335 HB3 PHD 18 PHD H2O H2O H 0 1 N N N N N N 14.145 34.581 -4.341 -0.566 -0.621 -4.664 H2O PHD 19 PHD H3O H3O H 0 1 N N N N N N 14.422 35.437 -2.081 -1.307 1.619 -2.790 H3O PHD 20 PHD HXT HO H 0 1 N Y N Y N Y 11.448 37.321 -0.727 -1.578 0.329 5.137 HXT PHD 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PHD N CA SING N N 1 PHD N H2 SING N N 2 PHD N H SING N N 3 PHD CA C SING N N 4 PHD CA CB SING N N 5 PHD CA HA SING N N 6 PHD C O DOUB N N 7 PHD C OXT SING N N 8 PHD CB CG SING N N 9 PHD CB HB2 SING N N 10 PHD CB HB3 SING N N 11 PHD CG OD1 SING N N 12 PHD CG OD2 DOUB N N 13 PHD OD1 P SING N N 14 PHD P OP1 DOUB N N 15 PHD P OP2 SING N N 16 PHD P OP3 SING N N 17 PHD OP2 H2O SING N N 18 PHD OP3 H3O SING N N 19 PHD OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PHD SMILES ACDLabs 10.04 "O=C(OP(=O)(O)O)CC(C(=O)O)N" PHD SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CC(=O)O[P](O)(O)=O)C(O)=O" PHD SMILES CACTVS 3.341 "N[CH](CC(=O)O[P](O)(O)=O)C(O)=O" PHD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H](C(=O)O)N)C(=O)OP(=O)(O)O" PHD SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(=O)O)N)C(=O)OP(=O)(O)O" PHD InChI InChI 1.03 "InChI=1S/C4H8NO7P/c5-2(4(7)8)1-3(6)12-13(9,10)11/h2H,1,5H2,(H,7,8)(H2,9,10,11)/t2-/m0/s1" PHD InChIKey InChI 1.03 IXZNKTPIYKDIGG-REOHCLBHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PHD "SYSTEMATIC NAME" ACDLabs 10.04 4-oxo-O-phosphono-L-homoserine PHD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-4-oxo-4-phosphonooxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PHD "Create component" 1999-10-06 EBI PHD "Modify descriptor" 2011-06-04 RCSB PHD "Modify backbone" 2023-11-03 PDBE PHD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PHD _pdbx_chem_comp_pcm.modified_residue_id ASP _pdbx_chem_comp_pcm.type Phosphorylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0038 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #