data_PID # _chem_comp.id PID _chem_comp.name PERIDININ _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C39 H50 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 630.810 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PID _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "not provided" _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1PPR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PID C1 C1 C 0 1 N N R 58.555 87.085 29.461 ? ? ? C1 PID 1 PID C2 C2 C 0 1 N N N 59.939 87.432 30.009 ? ? ? C2 PID 2 PID C3 C3 C 0 1 N N S 60.113 88.914 30.323 ? ? ? C3 PID 3 PID C4 C4 C 0 1 N N N 59.798 89.691 29.036 ? ? ? C4 PID 4 PID C5 C5 C 0 1 N N N 58.407 89.566 28.397 ? ? ? C5 PID 5 PID C6 C6 C 0 1 N N S 57.760 88.142 28.667 ? ? ? C6 PID 6 PID C7 C7 C 0 1 N N N 56.784 87.675 27.729 ? ? ? C7 PID 7 PID C8 C8 C 0 1 N N N 55.416 87.574 28.069 ? ? ? C8 PID 8 PID C9 C9 C 0 1 N N N 54.434 87.190 27.117 ? ? ? C9 PID 9 PID C10 C10 C 0 1 N N N 54.596 86.840 25.710 ? ? ? C10 PID 10 PID C11 C11 C 0 1 N N N 53.093 87.155 27.395 ? ? ? C11 PID 11 PID C12 C12 C 0 1 N N N 52.454 86.796 26.178 ? ? ? C12 PID 12 PID C13 C13 C 0 1 N N N 51.073 86.623 26.075 ? ? ? C13 PID 13 PID C14 C14 C 0 1 N N N 50.380 86.229 24.893 ? ? ? C14 PID 14 PID C15 C15 C 0 1 N N N 48.991 86.024 25.007 ? ? ? C15 PID 15 PID C16 C16 C 0 1 N N N 48.167 85.469 23.976 ? ? ? C16 PID 16 PID C17 C17 C 0 1 N N N 46.797 85.230 24.285 ? ? ? C17 PID 17 PID C18 C18 C 0 1 N N N 45.906 84.645 23.363 ? ? ? C18 PID 18 PID C19 C19 C 0 1 N N N 44.585 84.361 23.723 ? ? ? C19 PID 19 PID C20 C20 C 0 1 N N N 43.748 83.806 22.743 ? ? ? C20 PID 20 PID C21 C21 C 0 1 N N N 42.386 83.606 22.931 ? ? ? C21 PID 21 PID C22 C22 C 0 1 N N N 41.729 82.768 22.033 ? ? ? C22 PID 22 PID C23 C23 C 0 1 N N R 40.357 82.726 21.962 ? ? ? C23 PID 23 PID C24 C24 C 0 1 N N N 39.020 82.687 21.857 ? ? ? C24 PID 24 PID C25 C25 C 0 1 N N N 38.257 83.839 21.114 ? ? ? C25 PID 25 PID C26 C26 C 0 1 N N N 37.077 84.270 21.997 ? ? ? C26 PID 26 PID C27 C27 C 0 1 N N S 36.164 83.185 22.596 ? ? ? C27 PID 27 PID C28 C28 C 0 1 N N N 37.039 82.109 23.268 ? ? ? C28 PID 28 PID C29 C29 C 0 1 N N R 38.216 81.519 22.500 ? ? ? C29 PID 29 PID C30 C30 C 0 1 N N N 34.138 83.905 23.379 ? ? ? C30 PID 30 PID C31 C31 C 0 1 N N N 33.215 84.488 24.437 ? ? ? C31 PID 31 PID CM1 CM1 C 0 1 N N N 58.289 85.606 29.119 ? ? ? CM1 PID 32 PID CM2 CM2 C 0 1 N N N 58.535 89.815 26.912 ? ? ? CM2 PID 33 PID CM3 CM3 C 0 1 N N N 57.523 90.654 29.002 ? ? ? CM3 PID 34 PID CM4 CM4 C 0 1 N N N 51.089 86.115 23.527 ? ? ? CM4 PID 35 PID CM5 CM5 C 0 1 N N N 41.643 84.202 24.131 ? ? ? CM5 PID 36 PID CM6 CM6 C 0 1 N N N 39.204 85.034 20.894 ? ? ? CM6 PID 37 PID CM7 CM7 C 0 1 N N N 37.730 83.332 19.761 ? ? ? CM7 PID 38 PID CM8 CM8 C 0 1 N N N 39.128 80.667 23.387 ? ? ? CM8 PID 39 PID O1 O1 O 0 1 N N N 57.451 87.840 30.113 ? ? ? O1 PID 40 PID O2 O2 O 0 1 N N N 61.490 89.123 30.679 ? ? ? O2 PID 41 PID O3 O3 O 0 1 N N N 55.602 87.091 25.044 ? ? ? O3 PID 42 PID O4 O4 O 0 1 N N N 53.402 86.648 25.147 ? ? ? O4 PID 43 PID O5 O5 O 0 1 N N N 37.691 80.697 21.464 ? ? ? O5 PID 44 PID O6 O6 O 0 1 N N N 35.415 83.810 23.651 ? ? ? O6 PID 45 PID O7 O7 O 0 1 N N N 33.649 83.253 22.461 ? ? ? O7 PID 46 PID H21 1H2 H 0 1 N N N 60.178 86.808 30.901 ? ? ? H21 PID 47 PID H22A 2H2 H 0 0 N N N 60.738 87.078 29.316 ? ? ? H22A PID 48 PID H3 H3 H 0 1 N N N 59.447 89.248 31.152 ? ? ? H3 PID 49 PID H41 1H4 H 0 1 N N N 60.013 90.771 29.211 ? ? ? H41 PID 50 PID H42 2H4 H 0 1 N N N 60.565 89.434 28.269 ? ? ? H42 PID 51 PID H7 H7 H 0 1 N N N 57.096 87.383 26.711 ? ? ? H7 PID 52 PID H8 H8 H 0 1 N N N 55.107 87.800 29.103 ? ? ? H8 PID 53 PID H11 H11 H 0 1 N N N 52.632 87.367 28.374 ? ? ? H11 PID 54 PID H13 H13 H 0 1 N N N 50.488 86.810 26.991 ? ? ? H13 PID 55 PID H15 H15 H 0 1 N N N 48.520 86.315 25.960 ? ? ? H15 PID 56 PID H16 H16 H 0 1 N N N 48.573 85.233 22.978 ? ? ? H16 PID 57 PID H17 H17 H 0 1 N N N 46.410 85.509 25.279 ? ? ? H17 PID 58 PID H18 H18 H 0 1 N N N 46.248 84.405 22.342 ? ? ? H18 PID 59 PID H19 H19 H 0 1 N N N 44.216 84.567 24.742 ? ? ? H19 PID 60 PID H20 H20 H 0 1 N N N 44.183 83.511 21.773 ? ? ? H20 PID 61 PID H22 H22 H 0 1 N N N 42.312 82.118 21.358 ? ? ? H22 PID 62 PID H261 1H26 H 0 0 N N N 37.461 84.913 22.822 ? ? ? H261 PID 63 PID H262 2H26 H 0 0 N N N 36.449 84.996 21.430 ? ? ? H262 PID 64 PID H27 H27 H 0 1 N N N 35.516 82.738 21.805 ? ? ? H27 PID 65 PID H281 1H28 H 0 0 N N N 37.410 82.507 24.240 ? ? ? H281 PID 66 PID H282 2H28 H 0 0 N N N 36.381 81.275 23.609 ? ? ? H282 PID 67 PID H311 1H31 H 0 0 N N N 32.127 84.568 24.205 ? ? ? H311 PID 68 PID H312 2H31 H 0 0 N N N 33.342 83.915 25.385 ? ? ? H312 PID 69 PID H313 3H31 H 0 0 N N N 33.597 85.490 24.739 ? ? ? H313 PID 70 PID HM11 1HM1 H 0 0 N N N 57.279 85.352 28.719 ? ? ? HM11 PID 71 PID HM12 2HM1 H 0 0 N N N 59.070 85.241 28.412 ? ? ? HM12 PID 72 PID HM13 3HM1 H 0 0 N N N 58.505 84.973 30.011 ? ? ? HM13 PID 73 PID HM21 1HM2 H 0 0 N N N 57.525 89.724 26.448 ? ? ? HM21 PID 74 PID HM22 2HM2 H 0 0 N N N 59.024 90.790 26.682 ? ? ? HM22 PID 75 PID HM23 3HM2 H 0 0 N N N 59.288 89.148 26.430 ? ? ? HM23 PID 76 PID HM31 1HM3 H 0 0 N N N 56.513 90.563 28.538 ? ? ? HM31 PID 77 PID HM32 2HM3 H 0 0 N N N 57.493 90.620 30.116 ? ? ? HM32 PID 78 PID HM33 3HM3 H 0 0 N N N 57.958 91.675 28.898 ? ? ? HM33 PID 79 PID HM41 1HM4 H 0 0 N N N 50.547 85.806 22.602 ? ? ? HM41 PID 80 PID HM42 2HM4 H 0 0 N N N 51.585 87.091 23.319 ? ? ? HM42 PID 81 PID HM43 3HM4 H 0 0 N N N 51.960 85.431 23.653 ? ? ? HM43 PID 82 PID HM51 1HM5 H 0 0 N N N 40.550 84.041 24.281 ? ? ? HM51 PID 83 PID HM52 2HM5 H 0 0 N N N 42.168 83.870 25.057 ? ? ? HM52 PID 84 PID HM53 3HM5 H 0 0 N N N 41.831 85.301 24.138 ? ? ? HM53 PID 85 PID HM61 1HM6 H 0 0 N N N 38.661 85.852 20.365 ? ? ? HM61 PID 86 PID HM62 2HM6 H 0 0 N N N 39.666 85.383 21.846 ? ? ? HM62 PID 87 PID HM63 3HM6 H 0 0 N N N 40.137 84.737 20.360 ? ? ? HM63 PID 88 PID HM71 1HM7 H 0 0 N N N 37.187 84.150 19.232 ? ? ? HM71 PID 89 PID HM72 2HM7 H 0 0 N N N 38.541 82.895 19.133 ? ? ? HM72 PID 90 PID HM73 3HM7 H 0 0 N N N 37.101 82.418 19.873 ? ? ? HM73 PID 91 PID HM81 1HM8 H 0 0 N N N 38.552 79.830 23.847 ? ? ? HM81 PID 92 PID HM82 2HM8 H 0 0 N N N 40.021 80.299 22.831 ? ? ? HM82 PID 93 PID HM83 3HM8 H 0 0 N N N 39.652 81.282 24.155 ? ? ? HM83 PID 94 PID HO2 HO2 H 0 1 N N N 61.598 90.046 30.874 ? ? ? HO2 PID 95 PID HO5 HO5 H 0 1 N N N 37.200 79.984 21.856 ? ? ? HO5 PID 96 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PID C1 C2 SING N N 1 PID C1 C6 SING N N 2 PID C1 CM1 SING N N 3 PID C1 O1 SING N N 4 PID C2 C3 SING N N 5 PID C2 H21 SING N N 6 PID C2 H22A SING N N 7 PID C3 C4 SING N N 8 PID C3 O2 SING N N 9 PID C3 H3 SING N N 10 PID C4 C5 SING N N 11 PID C4 H41 SING N N 12 PID C4 H42 SING N N 13 PID C5 C6 SING N N 14 PID C5 CM2 SING N N 15 PID C5 CM3 SING N N 16 PID C6 C7 SING N N 17 PID C6 O1 SING N N 18 PID C7 C8 DOUB N E 19 PID C7 H7 SING N N 20 PID C8 C9 SING N N 21 PID C8 H8 SING N N 22 PID C9 C10 SING N N 23 PID C9 C11 DOUB N N 24 PID C10 O3 DOUB N N 25 PID C10 O4 SING N N 26 PID C11 C12 SING N N 27 PID C11 H11 SING N N 28 PID C12 C13 DOUB N Z 29 PID C12 O4 SING N N 30 PID C13 C14 SING N N 31 PID C13 H13 SING N N 32 PID C14 C15 DOUB N E 33 PID C14 CM4 SING N N 34 PID C15 C16 SING N N 35 PID C15 H15 SING N N 36 PID C16 C17 DOUB N E 37 PID C16 H16 SING N N 38 PID C17 C18 SING N N 39 PID C17 H17 SING N N 40 PID C18 C19 DOUB N E 41 PID C18 H18 SING N N 42 PID C19 C20 SING N N 43 PID C19 H19 SING N N 44 PID C20 C21 DOUB N E 45 PID C20 H20 SING N N 46 PID C21 C22 SING N N 47 PID C21 CM5 SING N N 48 PID C22 C23 DOUB N N 49 PID C22 H22 SING N N 50 PID C23 C24 DOUB N N 51 PID C24 C25 SING N N 52 PID C24 C29 SING N N 53 PID C25 C26 SING N N 54 PID C25 CM6 SING N N 55 PID C25 CM7 SING N N 56 PID C26 C27 SING N N 57 PID C26 H261 SING N N 58 PID C26 H262 SING N N 59 PID C27 C28 SING N N 60 PID C27 O6 SING N N 61 PID C27 H27 SING N N 62 PID C28 C29 SING N N 63 PID C28 H281 SING N N 64 PID C28 H282 SING N N 65 PID C29 CM8 SING N N 66 PID C29 O5 SING N N 67 PID C30 C31 SING N N 68 PID C30 O6 SING N N 69 PID C30 O7 DOUB N N 70 PID C31 H311 SING N N 71 PID C31 H312 SING N N 72 PID C31 H313 SING N N 73 PID CM1 HM11 SING N N 74 PID CM1 HM12 SING N N 75 PID CM1 HM13 SING N N 76 PID CM2 HM21 SING N N 77 PID CM2 HM22 SING N N 78 PID CM2 HM23 SING N N 79 PID CM3 HM31 SING N N 80 PID CM3 HM32 SING N N 81 PID CM3 HM33 SING N N 82 PID CM4 HM41 SING N N 83 PID CM4 HM42 SING N N 84 PID CM4 HM43 SING N N 85 PID CM5 HM51 SING N N 86 PID CM5 HM52 SING N N 87 PID CM5 HM53 SING N N 88 PID CM6 HM61 SING N N 89 PID CM6 HM62 SING N N 90 PID CM6 HM63 SING N N 91 PID CM7 HM71 SING N N 92 PID CM7 HM72 SING N N 93 PID CM7 HM73 SING N N 94 PID CM8 HM81 SING N N 95 PID CM8 HM82 SING N N 96 PID CM8 HM83 SING N N 97 PID O2 HO2 SING N N 98 PID O5 HO5 SING N N 99 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PID SMILES ACDLabs 10.04 "O=C(OC4CC(\C(=C=C\C(=C\C=C\C=C\C=C(\C=C1/OC(=O)C(=C1)/C=C/C23OC3(C)CC(O)CC2(C)C)C)C)C(O)(C)C4)(C)C)C" PID SMILES_CANONICAL CACTVS 3.341 "CC(=O)O[C@H]1CC(C)(C)[C](=[C@]=[CH]/C(C)=C/C=C/C=C/C=C(C)/C=C/2OC(=O)C(=C/2)/C=C/[C@@]34O[C@]3(C)C[C@@H](O)CC4(C)C)[C@](C)(O)C1" PID SMILES CACTVS 3.341 "CC(=O)O[CH]1CC(C)(C)[C](=[C]=[CH]C(C)=CC=CC=CC=C(C)C=C2OC(=O)C(=C2)C=C[C]34O[C]3(C)C[CH](O)CC4(C)C)[C](C)(O)C1" PID SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=C\C=C\C=C\C=C(/C)\C=C/1\C=C(C(=O)O1)\C=C\[C@]23C(C[C@@H](C[C@]2(O3)C)O)(C)C)C=C=C4C(C[C@@H](C[C@@]4(C)O)OC(=O)C)(C)C" PID SMILES "OpenEye OEToolkits" 1.5.0 "CC(=CC=CC=CC=C(C)C=C1C=C(C(=O)O1)C=CC23C(CC(CC2(O3)C)O)(C)C)C=C=C4C(CC(CC4(C)O)OC(=O)C)(C)C" PID InChI InChI 1.03 "InChI=1S/C39H50O7/c1-26(16-17-33-35(4,5)24-32(44-28(3)40)25-37(33,8)43)14-12-10-11-13-15-27(2)20-31-21-29(34(42)45-31)18-19-39-36(6,7)22-30(41)23-38(39,9)46-39/h10-16,18-21,30,32,41,43H,22-25H2,1-9H3/b12-10+,13-11+,19-18+,26-14+,27-15+,31-20-/t17-,30-,32-,37+,38+,39-/m0/s1" PID InChIKey InChI 1.03 UYRDHEJRPVSJFM-FROCQLDGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PID "SYSTEMATIC NAME" ACDLabs 10.04 "(1S,3R,4R)-3-hydroxy-4-{(3E,5E,7E,9E,11Z)-11-[4-{(E)-2-[(1S,4S,6R)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]ethenyl}-5-oxofuran-2(5H)-ylidene]-3,10-dimethylundeca-1,3,5,7,9-pentaen-1-ylidene}-3,5,5-trimethylcyclohexyl acetate" PID "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1S,3R)-3-hydroxy-4-[(5E,7E,9E,11Z)-11-[4-[(E)-2-[(1R,3S,6S)-3-hydroxy-1,5,5-trimethyl-7-oxabicyclo[4.1.0]heptan-6-yl]ethenyl]-5-oxo-furan-2-ylidene]-3,10-dimethyl-undeca-1,3,5,7,9-pentaenylidene]-3,5,5-trimethyl-cyclohexyl] ethanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PID "Create component" 1999-07-08 EBI PID "Modify descriptor" 2011-06-04 RCSB ##