data_PIF # _chem_comp.id PIF _chem_comp.name "(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H48 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE; D(+)SN1,2DI-O-OCTANOYLGLYCERYL" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-11 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 666.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PIF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3MTC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PIF C1 C1 C 0 1 N N N 54.854 9.202 57.126 4.272 1.061 -0.422 C1 PIF 1 PIF O1 O1 O 0 1 N N N 56.212 9.355 57.521 2.865 0.828 -0.335 O1 PIF 2 PIF P1 P1 P 0 1 N N N 57.010 8.770 58.791 1.772 1.802 -1.003 P1 PIF 3 PIF C2 C2 C 0 1 N N R 54.472 7.765 56.774 4.943 -0.123 -1.120 C2 PIF 4 PIF O2 O2 O 0 1 N N N 55.401 7.188 55.834 4.704 -1.316 -0.371 O2 PIF 5 PIF C3 C3 C 0 1 N N S 53.022 7.766 56.245 6.450 0.127 -1.214 C3 PIF 6 PIF O3 O3 O 0 1 N N N 52.647 6.446 55.850 7.077 -0.979 -1.866 O3 PIF 7 PIF C4 C4 C 0 1 N N N 52.772 8.722 55.070 7.029 0.284 0.194 C4 PIF 8 PIF O4 O4 O 0 1 N N N 51.373 8.978 54.908 8.436 0.517 0.107 O4 PIF 9 PIF P4 P4 P 0 1 N N N 50.519 8.296 53.716 9.530 -0.457 0.775 P4 PIF 10 PIF C5 C5 C 0 1 N N R 53.369 10.105 55.227 6.358 1.468 0.893 C5 PIF 11 PIF O5 O5 O 0 1 N N N 53.501 10.678 53.906 6.899 1.614 2.207 O5 PIF 12 PIF C6 C6 C 0 1 N N R 54.728 10.116 55.914 4.851 1.218 0.986 C6 PIF 13 PIF O6 O6 O 0 1 N N N 54.999 11.460 56.314 4.225 2.324 1.638 O6 PIF 14 PIF C7 C7 C 0 1 N N N 58.497 6.516 58.648 -0.890 2.028 -0.948 C7 PIF 15 PIF C8 C8 C 0 1 N N R 59.947 6.873 58.325 -2.115 1.286 -0.409 C8 PIF 16 PIF C9 C9 C 0 1 N N N 60.897 6.174 59.278 -3.372 2.117 -0.675 C9 PIF 17 PIF C10 C10 C 0 1 N N N 61.392 3.839 59.892 -5.708 2.077 -0.203 C10 PIF 18 PIF C11 C11 C 0 1 N N N 62.452 4.104 60.945 -6.943 1.466 0.408 C11 PIF 19 PIF O11 O11 O 0 1 N N N 58.073 9.810 59.063 1.981 3.185 -0.518 O11 PIF 20 PIF C12 C12 C 0 1 N N N 63.542 3.026 61.007 -8.154 2.348 0.101 C12 PIF 21 PIF O12 O12 O 0 1 N N N 56.105 8.329 59.911 1.928 1.766 -2.605 O12 PIF 22 PIF C13 C13 C 0 1 N N N 64.259 2.989 62.362 -9.408 1.728 0.720 C13 PIF 23 PIF O13 O13 O 0 1 N N N 57.632 7.470 58.043 0.294 1.309 -0.597 O13 PIF 24 PIF C14 C14 C 0 1 N N N 65.708 3.481 62.319 -10.619 2.610 0.413 C14 PIF 25 PIF O14 O14 O 0 1 N N N 60.313 6.477 57.007 -2.235 0.001 -1.074 O14 PIF 26 PIF C15 C15 C 0 1 N N N 66.201 3.861 63.720 -11.873 1.990 1.033 C15 PIF 27 PIF O15 O15 O 0 1 N N N 60.429 4.864 59.546 -4.519 1.471 -0.061 O15 PIF 28 PIF C16 C16 C 0 1 N N N 67.605 4.463 63.700 -13.084 2.872 0.726 C16 PIF 29 PIF O16 O16 O 0 1 N N N 61.292 2.778 59.295 -5.789 3.113 -0.820 O16 PIF 30 PIF C17 C17 C 0 1 N N N 67.791 5.524 64.765 -14.337 2.251 1.346 C17 PIF 31 PIF O17 O17 O 0 1 N N N 61.664 8.359 56.916 -3.175 -0.804 0.757 O17 PIF 32 PIF C18 C18 C 0 1 N N N 61.371 7.288 56.416 -2.796 -0.997 -0.374 C18 PIF 33 PIF C19 C19 C 0 1 N N N 62.095 6.797 55.183 -2.953 -2.360 -0.999 C19 PIF 34 PIF C20 C20 C 0 1 N N N 63.571 6.555 55.510 -3.616 -3.307 0.003 C20 PIF 35 PIF C21 C21 C 0 1 N N N 63.769 5.463 56.564 -3.775 -4.690 -0.631 C21 PIF 36 PIF C22 C22 C 0 1 N N N 65.027 4.645 56.272 -4.438 -5.637 0.371 C22 PIF 37 PIF C23 C23 C 0 1 N N N 65.465 3.760 57.436 -4.597 -7.021 -0.263 C23 PIF 38 PIF C24 C24 C 0 1 N N N 65.290 2.275 57.139 -5.260 -7.968 0.739 C24 PIF 39 PIF C25 C25 C 0 1 N N N 66.008 1.430 58.168 -5.420 -9.351 0.105 C25 PIF 40 PIF O41 O41 O 0 1 N N N 50.843 6.811 53.884 11.007 0.036 0.369 O41 PIF 41 PIF O42 O42 O 0 1 N N N 49.120 8.732 54.083 9.373 -0.421 2.377 O42 PIF 42 PIF O43 O43 O 0 1 N N N 51.050 8.956 52.463 9.320 -1.840 0.290 O43 PIF 43 PIF H1 H1 H 0 1 N N N 54.170 9.458 57.949 4.455 1.972 -0.993 H1 PIF 44 PIF H2 H2 H 0 1 N N N 54.525 7.130 57.671 4.531 -0.234 -2.123 H2 PIF 45 PIF HO2 HO2 H 0 1 N N N 55.138 6.297 55.635 5.102 -2.109 -0.757 HO2 PIF 46 PIF H3 H3 H 0 1 N N N 52.407 8.128 57.082 6.633 1.037 -1.785 H3 PIF 47 PIF HO3 HO3 H 0 1 N N N 51.754 6.454 55.526 6.758 -1.137 -2.765 HO3 PIF 48 PIF H4 H4 H 0 1 N N N 53.242 8.197 54.225 6.846 -0.626 0.765 H4 PIF 49 PIF H5 H5 H 0 1 N N N 52.696 10.687 55.874 6.541 2.378 0.321 H5 PIF 50 PIF HO5 HO5 H 0 1 N N N 53.874 11.549 53.974 6.518 2.348 2.710 HO5 PIF 51 PIF H6 H6 H 0 1 N N N 55.453 9.726 55.184 4.669 0.308 1.557 H6 PIF 52 PIF HO6 HO6 H 0 1 N N N 54.922 12.036 55.563 4.543 2.483 2.537 HO6 PIF 53 PIF H7 H7 H 0 1 N N N 58.350 6.526 59.738 -0.961 2.105 -2.033 H7 PIF 54 PIF H7A H7A H 0 1 N N N 58.269 5.513 58.257 -0.851 3.027 -0.514 H7A PIF 55 PIF H8 H8 H 0 1 N N N 60.021 7.966 58.421 -2.003 1.131 0.664 H8 PIF 56 PIF H9 H9 H 0 1 N N N 61.896 6.118 58.822 -3.246 3.113 -0.252 H9 PIF 57 PIF H9A H9A H 0 1 N N N 60.953 6.741 60.219 -3.534 2.197 -1.750 H9A PIF 58 PIF H11 H11 H 0 1 N N N 62.934 5.064 60.710 -7.102 0.472 -0.012 H11 PIF 59 PIF H11A H11A H 0 0 N N N 61.956 4.145 61.926 -6.814 1.388 1.487 H11A PIF 60 PIF H12 H12 H 0 1 N N N 63.072 2.046 60.835 -7.995 3.342 0.520 H12 PIF 61 PIF H12A H12A H 0 0 N N N 64.286 3.239 60.225 -8.283 2.426 -0.979 H12A PIF 62 PIF HO12 HO12 H 0 0 N N N 56.334 8.795 60.706 1.803 0.889 -2.992 HO12 PIF 63 PIF H13 H13 H 0 1 N N N 63.703 3.635 63.057 -9.566 0.734 0.301 H13 PIF 64 PIF H13A H13A H 0 0 N N N 64.266 1.947 62.713 -9.279 1.650 1.800 H13A PIF 65 PIF H14 H14 H 0 1 N N N 66.346 2.679 61.921 -10.460 3.604 0.832 H14 PIF 66 PIF H14A H14A H 0 0 N N N 65.766 4.365 61.668 -10.748 2.688 -0.666 H14A PIF 67 PIF H15 H15 H 0 1 N N N 65.509 4.603 64.144 -12.031 0.996 0.614 H15 PIF 68 PIF H15A H15A H 0 0 N N N 66.219 2.954 64.342 -11.744 1.912 2.113 H15A PIF 69 PIF H16 H16 H 0 1 N N N 68.333 3.658 63.878 -12.925 3.866 1.145 H16 PIF 70 PIF H16A H16A H 0 0 N N N 67.774 4.923 62.715 -13.213 2.950 -0.354 H16A PIF 71 PIF H17 H17 H 0 1 N N N 68.814 5.925 64.709 -15.201 2.880 1.127 H17 PIF 72 PIF H17A H17A H 0 0 N N N 67.069 6.338 64.602 -14.496 1.258 0.927 H17A PIF 73 PIF H17B H17B H 0 0 N N N 67.625 5.080 65.758 -14.209 2.174 2.425 H17B PIF 74 PIF H19 H19 H 0 1 N N N 61.638 5.856 54.842 -3.575 -2.281 -1.890 H19 PIF 75 PIF H19A H19A H 0 0 N N N 62.017 7.554 54.389 -1.972 -2.749 -1.273 H19A PIF 76 PIF H20 H20 H 0 1 N N N 64.085 6.246 54.588 -2.993 -3.386 0.895 H20 PIF 77 PIF H20A H20A H 0 0 N N N 64.000 7.492 55.895 -4.596 -2.918 0.278 H20A PIF 78 PIF H21 H21 H 0 1 N N N 63.870 5.934 57.553 -4.397 -4.611 -1.523 H21 PIF 79 PIF H21A H21A H 0 0 N N N 62.896 4.794 56.554 -2.795 -5.079 -0.905 H21A PIF 80 PIF H22 H22 H 0 1 N N N 64.820 3.996 55.408 -3.816 -5.716 1.263 H22 PIF 81 PIF H22A H22A H 0 0 N N N 65.845 5.345 56.048 -5.418 -5.248 0.646 H22A PIF 82 PIF H23 H23 H 0 1 N N N 66.529 3.952 57.638 -5.220 -6.942 -1.155 H23 PIF 83 PIF H23A H23A H 0 0 N N N 64.855 4.014 58.315 -3.617 -7.410 -0.537 H23A PIF 84 PIF H24 H24 H 0 1 N N N 64.218 2.030 57.160 -4.638 -8.047 1.631 H24 PIF 85 PIF H24A H24A H 0 0 N N N 65.706 2.058 56.144 -6.240 -7.579 1.013 H24A PIF 86 PIF H25 H25 H 0 1 N N N 65.867 0.365 57.932 -6.042 -9.272 -0.787 H25 PIF 87 PIF H25A H25A H 0 0 N N N 67.082 1.669 58.154 -4.439 -9.740 -0.169 H25A PIF 88 PIF H25B H25B H 0 0 N N N 65.598 1.642 59.167 -5.892 -10.026 0.819 H25B PIF 89 PIF HO41 HO41 H 0 0 N N N 51.353 6.512 53.141 11.718 -0.506 0.737 HO41 PIF 90 PIF HO42 HO42 H 0 0 N N N 48.807 9.363 53.445 9.498 0.456 2.764 HO42 PIF 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PIF C6 C1 SING N N 1 PIF C2 C1 SING N N 2 PIF C1 O1 SING N N 3 PIF C1 H1 SING N N 4 PIF O1 P1 SING N N 5 PIF O13 P1 SING N N 6 PIF P1 O11 DOUB N N 7 PIF P1 O12 SING N N 8 PIF O2 C2 SING N N 9 PIF C3 C2 SING N N 10 PIF C2 H2 SING N N 11 PIF O2 HO2 SING N N 12 PIF C4 C3 SING N N 13 PIF O3 C3 SING N N 14 PIF C3 H3 SING N N 15 PIF O3 HO3 SING N N 16 PIF O4 C4 SING N N 17 PIF C4 C5 SING N N 18 PIF C4 H4 SING N N 19 PIF P4 O4 SING N N 20 PIF O43 P4 DOUB N N 21 PIF P4 O41 SING N N 22 PIF P4 O42 SING N N 23 PIF O5 C5 SING N N 24 PIF C5 C6 SING N N 25 PIF C5 H5 SING N N 26 PIF O5 HO5 SING N N 27 PIF C6 O6 SING N N 28 PIF C6 H6 SING N N 29 PIF O6 HO6 SING N N 30 PIF O13 C7 SING N N 31 PIF C8 C7 SING N N 32 PIF C7 H7 SING N N 33 PIF C7 H7A SING N N 34 PIF O14 C8 SING N N 35 PIF C8 C9 SING N N 36 PIF C8 H8 SING N N 37 PIF C9 O15 SING N N 38 PIF C9 H9 SING N N 39 PIF C9 H9A SING N N 40 PIF O16 C10 DOUB N N 41 PIF O15 C10 SING N N 42 PIF C10 C11 SING N N 43 PIF C11 C12 SING N N 44 PIF C11 H11 SING N N 45 PIF C11 H11A SING N N 46 PIF C12 C13 SING N N 47 PIF C12 H12 SING N N 48 PIF C12 H12A SING N N 49 PIF O12 HO12 SING N N 50 PIF C14 C13 SING N N 51 PIF C13 H13 SING N N 52 PIF C13 H13A SING N N 53 PIF C14 C15 SING N N 54 PIF C14 H14 SING N N 55 PIF C14 H14A SING N N 56 PIF C18 O14 SING N N 57 PIF C16 C15 SING N N 58 PIF C15 H15 SING N N 59 PIF C15 H15A SING N N 60 PIF C16 C17 SING N N 61 PIF C16 H16 SING N N 62 PIF C16 H16A SING N N 63 PIF C17 H17 SING N N 64 PIF C17 H17A SING N N 65 PIF C17 H17B SING N N 66 PIF C18 O17 DOUB N N 67 PIF C19 C18 SING N N 68 PIF C19 C20 SING N N 69 PIF C19 H19 SING N N 70 PIF C19 H19A SING N N 71 PIF C20 C21 SING N N 72 PIF C20 H20 SING N N 73 PIF C20 H20A SING N N 74 PIF C22 C21 SING N N 75 PIF C21 H21 SING N N 76 PIF C21 H21A SING N N 77 PIF C22 C23 SING N N 78 PIF C22 H22 SING N N 79 PIF C22 H22A SING N N 80 PIF C24 C23 SING N N 81 PIF C23 H23 SING N N 82 PIF C23 H23A SING N N 83 PIF C24 C25 SING N N 84 PIF C24 H24 SING N N 85 PIF C24 H24A SING N N 86 PIF C25 H25 SING N N 87 PIF C25 H25A SING N N 88 PIF C25 H25B SING N N 89 PIF O41 HO41 SING N N 90 PIF O42 HO42 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PIF SMILES ACDLabs 12.01 "O=C(OCC(OC(=O)CCCCCCC)COP(=O)(O)OC1C(O)C(O)C(OP(=O)(O)O)C(O)C1O)CCCCCCC" PIF SMILES_CANONICAL CACTVS 3.370 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[C@@H]1[C@H](O)[C@H](O)[C@@H](O[P](O)(O)=O)[C@H](O)[C@H]1O)OC(=O)CCCCCCC" PIF SMILES CACTVS 3.370 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O)OC(=O)CCCCCCC" PIF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)OC[C@H](CO[P@](=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC" PIF SMILES "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)OCC(COP(=O)(O)OC1C(C(C(C(C1O)O)OP(=O)(O)O)O)O)OC(=O)CCCCCCC" PIF InChI InChI 1.03 "InChI=1S/C25H48O16P2/c1-3-5-7-9-11-13-18(26)37-15-17(39-19(27)14-12-10-8-6-4-2)16-38-43(35,36)41-25-22(30)20(28)24(21(29)23(25)31)40-42(32,33)34/h17,20-25,28-31H,3-16H2,1-2H3,(H,35,36)(H2,32,33,34)/t17-,20-,21+,22-,23-,24+,25+/m1/s1" PIF InChIKey InChI 1.03 SNIQYSSXZJPPEL-LKTRINTESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PIF "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-tetrahydroxy-4-(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate" PIF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R)-3-[hydroxy-[(2R,3R,5S,6R)-2,3,5,6-tetrahydroxy-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-2-octanoyloxy-propyl] octanoate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PIF "Create component" 2010-05-11 RCSB PIF "Modify descriptor" 2011-06-04 RCSB PIF "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PIF "L-ALPHA-D-MYOPHOSPHATIDYLINOSITOL 4-PHOSPHATE" ? ? 2 PIF "D(+)SN1,2DI-O-OCTANOYLGLYCERYL" ? ? #