data_PJ5 # _chem_comp.id PJ5 _chem_comp.name "(1~{S},2~{S},3~{S},4~{S})-4-(hydroxymethyl)cyclopentane-1,2,3-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H12 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-20 _chem_comp.pdbx_modified_date 2021-01-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PJ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YQH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PJ5 "O1'" O1 O 0 1 N N N 34.818 -28.982 5.758 -2.206 -1.686 0.151 "O1'" PJ5 1 PJ5 "C1'" C1 C 0 1 N N S 33.837 -28.067 5.282 -1.204 -0.815 0.679 "C1'" PJ5 2 PJ5 "C6'" C2 C 0 1 N N N 33.253 -27.166 6.376 0.204 -1.261 0.212 "C6'" PJ5 3 PJ5 "C2'" C3 C 0 1 N N S 34.539 -27.116 4.315 -1.362 0.606 0.098 "C2'" PJ5 4 PJ5 "O2'" O2 O 0 1 N N N 35.357 -27.750 3.362 -2.066 0.550 -1.144 "O2'" PJ5 5 PJ5 "C3'" C4 C 0 1 N N S 35.230 -26.122 5.234 0.059 1.151 -0.125 "C3'" PJ5 6 PJ5 "O3'" O3 O 0 1 N N N 35.663 -24.881 4.562 0.261 2.329 0.658 "O3'" PJ5 7 PJ5 "C4'" C5 C 0 1 N N S 34.176 -25.870 6.298 1.032 0.042 0.328 "C4'" PJ5 8 PJ5 "C5'" C6 C 0 1 N N N 34.830 -25.567 7.649 2.250 -0.013 -0.597 "C5'" PJ5 9 PJ5 "O5'" O4 O 0 1 N N N 36.102 -26.049 7.880 3.189 -0.964 -0.093 "O5'" PJ5 10 PJ5 HA H1 H 0 1 N N N 34.415 -29.592 6.365 -3.107 -1.452 0.412 HA PJ5 11 PJ5 "H1'" H2 H 0 1 N N N 33.023 -28.592 4.761 -1.255 -0.791 1.768 "H1'" PJ5 12 PJ5 "H6'" H3 H 0 1 N N N 32.202 -26.917 6.165 0.603 -2.033 0.870 "H6'" PJ5 13 PJ5 "H6'1" H4 H 0 0 N N N 33.325 -27.645 7.364 0.175 -1.613 -0.820 "H6'1" PJ5 14 PJ5 "H2'" H5 H 0 1 N N N 33.751 -26.564 3.782 -1.899 1.240 0.804 "H2'" PJ5 15 PJ5 HB H6 H 0 1 N N N 34.833 -28.347 2.841 -2.970 0.215 -1.070 HB PJ5 16 PJ5 "H3'" H7 H 0 1 N N N 36.099 -26.610 5.700 0.212 1.373 -1.181 "H3'" PJ5 17 PJ5 HC H8 H 0 1 N N N 36.085 -24.309 5.193 -0.337 3.056 0.435 HC PJ5 18 PJ5 "H4'" H9 H 0 1 N N N 33.552 -25.015 5.998 1.343 0.206 1.360 "H4'" PJ5 19 PJ5 "H5'1" H10 H 0 0 N N N 34.872 -24.473 7.753 1.933 -0.310 -1.597 "H5'1" PJ5 20 PJ5 "H5'2" H11 H 0 0 N N N 34.176 -25.985 8.429 2.717 0.971 -0.642 "H5'2" PJ5 21 PJ5 "H5'" H12 H 0 1 N N N 36.386 -25.791 8.749 3.988 -1.051 -0.631 "H5'" PJ5 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PJ5 "O2'" "C2'" SING N N 1 PJ5 "C2'" "C3'" SING N N 2 PJ5 "C2'" "C1'" SING N N 3 PJ5 "O3'" "C3'" SING N N 4 PJ5 "C3'" "C4'" SING N N 5 PJ5 "C1'" "O1'" SING N N 6 PJ5 "C1'" "C6'" SING N N 7 PJ5 "C4'" "C6'" SING N N 8 PJ5 "C4'" "C5'" SING N N 9 PJ5 "C5'" "O5'" SING N N 10 PJ5 "O1'" HA SING N N 11 PJ5 "C1'" "H1'" SING N N 12 PJ5 "C6'" "H6'" SING N N 13 PJ5 "C6'" "H6'1" SING N N 14 PJ5 "C2'" "H2'" SING N N 15 PJ5 "O2'" HB SING N N 16 PJ5 "C3'" "H3'" SING N N 17 PJ5 "O3'" HC SING N N 18 PJ5 "C4'" "H4'" SING N N 19 PJ5 "C5'" "H5'1" SING N N 20 PJ5 "C5'" "H5'2" SING N N 21 PJ5 "O5'" "H5'" SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PJ5 InChI InChI 1.03 "InChI=1S/C6H12O4/c7-2-3-1-4(8)6(10)5(3)9/h3-10H,1-2H2/t3-,4-,5-,6-/m0/s1" PJ5 InChIKey InChI 1.03 PHKHGSSZAJVEQK-BXKVDMCESA-N PJ5 SMILES_CANONICAL CACTVS 3.385 "OC[C@@H]1C[C@H](O)[C@H](O)[C@H]1O" PJ5 SMILES CACTVS 3.385 "OC[CH]1C[CH](O)[CH](O)[CH]1O" PJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]([C@H]([C@H]1O)O)O)CO" PJ5 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C1O)O)O)CO" # _pdbx_chem_comp_identifier.comp_id PJ5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{S},3~{S},4~{S})-4-(hydroxymethyl)cyclopentane-1,2,3-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PJ5 "Create component" 2020-04-20 PDBE PJ5 "Initial release" 2021-01-27 RCSB ##