data_PJF # _chem_comp.id PJF _chem_comp.name "3-{[(10R)-4-[(4-chlorophenyl)methyl]-5-oxo-1,2,4,5,8,9-hexahydroimidazo[1,2-a]pyrido[3,4-e]pyrimidin-7(6H)-yl]methyl}benzonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 Cl N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-26 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.917 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PJF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7UVR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PJF C1 C1 C 0 1 N N N 5.566 -55.410 58.386 5.501 -2.898 -1.631 C1 PJF 1 PJF C10 C2 C 0 1 N N N 12.163 -58.029 56.473 0.182 2.587 -0.430 C10 PJF 2 PJF C11 C3 C 0 1 N N N 12.277 -57.186 57.532 0.456 1.718 0.558 C11 PJF 3 PJF C12 C4 C 0 1 N N N 11.398 -57.305 58.754 1.865 1.355 0.944 C12 PJF 4 PJF C13 C5 C 0 1 N N N 13.196 -56.142 57.481 -0.615 1.117 1.269 C13 PJF 5 PJF C14 C6 C 0 1 N N N 15.089 -54.986 56.376 -2.984 0.790 1.703 C14 PJF 6 PJF C15 C7 C 0 1 Y N N 14.613 -53.733 55.691 -3.385 -0.491 1.019 C15 PJF 7 PJF C16 C8 C 0 1 Y N N 13.271 -53.404 55.671 -2.776 -1.682 1.370 C16 PJF 8 PJF C17 C9 C 0 1 Y N N 12.837 -52.246 55.058 -3.144 -2.857 0.742 C17 PJF 9 PJF C18 C10 C 0 1 Y N N 13.760 -51.417 54.462 -4.122 -2.842 -0.236 C18 PJF 10 PJF C19 C11 C 0 1 Y N N 15.099 -51.720 54.471 -4.731 -1.651 -0.586 C19 PJF 11 PJF C2 C12 C 0 1 Y N N 6.589 -55.776 59.316 5.053 -2.124 -0.512 C2 PJF 12 PJF C20 C13 C 0 1 Y N N 15.514 -52.880 55.085 -4.366 -0.477 0.045 C20 PJF 13 PJF C21 C14 C 0 1 N N N 13.912 -56.934 55.354 -2.166 2.318 -0.055 C21 PJF 14 PJF C22 C15 C 0 1 N N N 14.079 -57.917 53.367 -3.189 3.679 -1.569 C22 PJF 15 PJF C23 C16 C 0 1 N N N 13.025 -58.698 54.160 -1.666 3.801 -1.759 C23 PJF 16 PJF C24 C17 C 0 1 Y N N 7.448 -56.838 59.024 4.846 -0.750 -0.648 C24 PJF 17 PJF C3 C18 C 0 1 Y N N 6.710 -55.090 60.505 4.815 -2.741 0.718 C3 PJF 18 PJF C4 C19 C 0 1 Y N N 7.684 -55.460 61.408 4.383 -1.990 1.791 C4 PJF 19 PJF C5 C20 C 0 1 Y N N 8.538 -56.510 61.122 4.186 -0.627 1.651 C5 PJF 20 PJF C6 C21 C 0 1 Y N N 8.429 -57.208 59.933 4.414 -0.010 0.434 C6 PJF 21 PJF C7 C22 C 0 1 N N N 9.372 -58.348 59.631 4.191 1.473 0.290 C7 PJF 22 PJF C8 C23 C 0 1 N N N 10.549 -59.364 57.790 2.609 3.130 -0.502 C8 PJF 23 PJF C9 C24 C 0 1 N N N 11.139 -59.122 56.423 1.271 3.253 -1.231 C9 PJF 24 PJF N1 N1 N 0 1 N N N 4.793 -55.069 57.614 5.856 -3.511 -2.518 N1 PJF 25 PJF N2 N2 N 0 1 N N N 10.205 -58.098 58.446 2.803 1.721 -0.122 N2 PJF 26 PJF N3 N3 N 0 1 N N N 14.044 -56.043 56.416 -1.887 1.417 0.962 N3 PJF 27 PJF N4 N4 N 0 1 N N N 14.629 -56.889 54.275 -3.335 2.718 -0.471 N4 PJF 28 PJF N5 N5 N 0 1 N N N 12.984 -57.907 55.398 -1.123 2.887 -0.738 N5 PJF 29 PJF O1 O1 O 0 1 N N N 13.230 -55.293 58.382 -0.378 0.325 2.163 O1 PJF 30 PJF CL1 CL1 CL 0 0 N N N 13.220 -49.954 53.683 -4.578 -4.317 -1.030 CL1 PJF 31 PJF H1 H1 H 0 1 N N N 11.962 -57.796 59.561 2.135 1.883 1.858 H1 PJF 32 PJF H2 H2 H 0 1 N N N 11.092 -56.300 59.080 1.923 0.280 1.119 H2 PJF 33 PJF H3 H3 H 0 1 N N N 15.964 -55.374 55.834 -3.837 1.469 1.733 H3 PJF 34 PJF H4 H4 H 0 1 N N N 15.378 -54.736 57.407 -2.658 0.572 2.720 H4 PJF 35 PJF H5 H5 H 0 1 N N N 12.553 -54.061 56.140 -2.013 -1.693 2.133 H5 PJF 36 PJF H6 H6 H 0 1 N N N 11.787 -51.994 55.046 -2.667 -3.787 1.016 H6 PJF 37 PJF H7 H7 H 0 1 N N N 15.815 -51.059 54.004 -5.494 -1.638 -1.350 H7 PJF 38 PJF H8 H8 H 0 1 N N N 16.565 -53.128 55.093 -4.842 0.454 -0.228 H8 PJF 39 PJF H9 H9 H 0 1 N N N 14.879 -58.594 53.034 -3.618 4.642 -1.294 H9 PJF 40 PJF H10 H10 H 0 1 N N N 12.052 -58.702 53.648 -1.375 3.477 -2.758 H10 PJF 41 PJF H11 H11 H 0 1 N N N 7.349 -57.371 58.090 5.024 -0.267 -1.597 H11 PJF 42 PJF H12 H12 H 0 1 N N N 6.046 -54.268 60.728 4.968 -3.805 0.828 H12 PJF 43 PJF H13 H13 H 0 1 N N N 7.781 -54.928 62.343 4.199 -2.466 2.743 H13 PJF 44 PJF H14 H14 H 0 1 N N N 9.299 -56.788 61.836 3.848 -0.044 2.495 H14 PJF 45 PJF H15 H15 H 0 1 N N N 8.779 -59.258 59.458 4.379 1.964 1.245 H15 PJF 46 PJF H16 H16 H 0 1 N N N 10.031 -58.499 60.499 4.870 1.871 -0.464 H16 PJF 47 PJF H17 H17 H 0 1 N N N 9.640 -59.974 57.686 3.417 3.447 -1.162 H17 PJF 48 PJF H18 H18 H 0 1 N N N 11.283 -59.902 58.408 2.599 3.754 0.392 H18 PJF 49 PJF H19 H19 H 0 1 N N N 10.336 -58.833 55.729 1.346 2.774 -2.208 H19 PJF 50 PJF H20 H20 H 0 1 N N N 11.616 -60.047 56.067 1.028 4.307 -1.366 H20 PJF 51 PJF H22 H22 H 0 1 N N N 13.615 -57.439 52.492 -3.658 3.296 -2.476 H22 PJF 52 PJF H23 H23 H 0 1 N N N 13.344 -59.734 54.350 -1.336 4.823 -1.574 H23 PJF 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PJF C22 C23 SING N N 1 PJF C22 N4 SING N N 2 PJF CL1 C18 SING N N 3 PJF C23 N5 SING N N 4 PJF N4 C21 DOUB N N 5 PJF C18 C19 DOUB Y N 6 PJF C18 C17 SING Y N 7 PJF C19 C20 SING Y N 8 PJF C17 C16 DOUB Y N 9 PJF C20 C15 DOUB Y N 10 PJF C21 N5 SING N N 11 PJF C21 N3 SING N N 12 PJF N5 C10 SING N N 13 PJF C16 C15 SING Y N 14 PJF C15 C14 SING N N 15 PJF C14 N3 SING N N 16 PJF N3 C13 SING N N 17 PJF C9 C10 SING N N 18 PJF C9 C8 SING N N 19 PJF C10 C11 DOUB N N 20 PJF C13 C11 SING N N 21 PJF C13 O1 DOUB N N 22 PJF C11 C12 SING N N 23 PJF N1 C1 TRIP N N 24 PJF C8 N2 SING N N 25 PJF C1 C2 SING N N 26 PJF N2 C12 SING N N 27 PJF N2 C7 SING N N 28 PJF C24 C2 DOUB Y N 29 PJF C24 C6 SING Y N 30 PJF C2 C3 SING Y N 31 PJF C7 C6 SING N N 32 PJF C6 C5 DOUB Y N 33 PJF C3 C4 DOUB Y N 34 PJF C5 C4 SING Y N 35 PJF C12 H1 SING N N 36 PJF C12 H2 SING N N 37 PJF C14 H3 SING N N 38 PJF C14 H4 SING N N 39 PJF C16 H5 SING N N 40 PJF C17 H6 SING N N 41 PJF C19 H7 SING N N 42 PJF C20 H8 SING N N 43 PJF C22 H9 SING N N 44 PJF C23 H10 SING N N 45 PJF C24 H11 SING N N 46 PJF C3 H12 SING N N 47 PJF C4 H13 SING N N 48 PJF C5 H14 SING N N 49 PJF C7 H15 SING N N 50 PJF C7 H16 SING N N 51 PJF C8 H17 SING N N 52 PJF C8 H18 SING N N 53 PJF C9 H19 SING N N 54 PJF C9 H20 SING N N 55 PJF C22 H22 SING N N 56 PJF C23 H23 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PJF SMILES ACDLabs 12.01 "Clc1ccc(cc1)CN1C2=NCCN2C=2CCN(Cc3cccc(C#N)c3)CC=2C1=O" PJF InChI InChI 1.03 "InChI=1S/C24H22ClN5O/c25-20-6-4-17(5-7-20)15-30-23(31)21-16-28(14-19-3-1-2-18(12-19)13-26)10-8-22(21)29-11-9-27-24(29)30/h1-7,12H,8-11,14-16H2" PJF InChIKey InChI 1.03 QFVFQQBTVHHWBZ-UHFFFAOYSA-N PJF SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(c4)C#N)C3)N5CCN=C25)cc1" PJF SMILES CACTVS 3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(c4)C#N)C3)N5CCN=C25)cc1" PJF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C#N)CN2CCC3=C(C2)C(=O)N(C4=NCCN34)Cc5ccc(cc5)Cl" PJF SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C#N)CN2CCC3=C(C2)C(=O)N(C4=NCCN34)Cc5ccc(cc5)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PJF "SYSTEMATIC NAME" ACDLabs 12.01 "3-{[(10R)-4-[(4-chlorophenyl)methyl]-5-oxo-1,2,4,5,8,9-hexahydroimidazo[1,2-a]pyrido[3,4-e]pyrimidin-7(6H)-yl]methyl}benzonitrile" PJF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[[7-[(4-chlorophenyl)methyl]-8-oxidanylidene-2,5,7,11-tetrazatricyclo[7.4.0.0^{2,6}]trideca-1(9),5-dien-11-yl]methyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PJF "Create component" 2022-05-26 RCSB PJF "Initial release" 2023-01-11 RCSB #