data_PJI # _chem_comp.id PJI _chem_comp.name "~{N}-[2-[2-(6-chloranylhexoxy)ethoxy]ethyl]-6-[3,3-dimethyl-2-[(~{E})-3-(1,3,3-trimethylindol-2-ylidene)prop-1-enyl]indol-1-ium-1-yl]hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H57 Cl N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-10-04 _chem_comp.pdbx_modified_date 2023-07-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 663.352 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PJI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B6R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PJI N1 N1 N 1 1 N N N -22.820 -41.377 -7.232 -4.023 -2.860 -0.166 N1 PJI 1 PJI C7 C1 C 0 1 N N N -9.599 -36.861 -12.668 9.742 2.359 -0.268 C7 PJI 2 PJI C8 C2 C 0 1 N N N -9.432 -35.457 -13.245 10.028 3.088 1.046 C8 PJI 3 PJI N2 N2 N 0 1 N N N -25.447 -43.395 -13.011 -5.397 4.113 -1.534 N2 PJI 4 PJI C9 C3 C 0 1 N N N -8.945 -35.471 -14.695 10.296 4.567 0.761 C9 PJI 5 PJI O1 O1 O 0 1 N N N -12.691 -41.302 -11.773 7.222 -3.537 -0.998 O1 PJI 6 PJI C1 C4 C 0 1 N N N -14.830 -42.130 -11.376 5.618 -4.821 0.275 C1 PJI 7 PJI C5 C5 C 0 1 N N N -10.070 -38.194 -10.567 9.187 0.151 -1.297 C5 PJI 8 PJI C6 C6 C 0 1 N N N -10.162 -36.849 -11.262 9.473 0.880 0.017 C6 PJI 9 PJI C4 C7 C 0 1 N N N -10.770 -40.462 -10.705 8.656 -2.006 -2.198 C4 PJI 10 PJI C3 C8 C 0 1 N N N -11.300 -41.470 -11.656 8.405 -3.461 -1.796 C3 PJI 11 PJI C2 C9 C 0 1 N N N -13.466 -41.935 -10.765 6.895 -4.860 -0.567 C2 PJI 12 PJI N N3 N 0 1 N N N -15.787 -42.630 -10.398 4.494 -4.398 -0.564 N PJI 13 PJI C C10 C 0 1 N N N -16.550 -41.820 -9.666 3.260 -4.292 -0.032 C PJI 14 PJI O O2 O 0 1 N N N -16.567 -40.600 -9.828 3.080 -4.547 1.140 O PJI 15 PJI C10 C11 C 0 1 N N N -8.476 -34.055 -15.205 10.583 5.296 2.075 C10 PJI 16 PJI C11 C12 C 0 1 N N N -17.320 -42.490 -8.545 2.103 -3.857 -0.895 C11 PJI 17 PJI C12 C13 C 0 1 N N N -18.662 -41.873 -8.158 0.826 -3.819 -0.053 C12 PJI 18 PJI C13 C14 C 0 1 N N N -19.695 -42.084 -9.242 -0.349 -3.377 -0.929 C13 PJI 19 PJI C14 C15 C 0 1 N N N -21.011 -41.436 -8.904 -1.626 -3.339 -0.087 C14 PJI 20 PJI C15 C16 C 0 1 N N N -21.704 -42.174 -7.773 -2.821 -3.017 -0.987 C15 PJI 21 PJI C16 C17 C 0 1 N N N -24.065 -41.347 -7.717 -4.671 -1.730 -0.057 C16 PJI 22 PJI C17 C18 C 0 1 N N N -24.426 -42.099 -8.837 -4.337 -0.516 -0.680 C17 PJI 23 PJI C18 C19 C 0 1 N N N -25.439 -41.909 -9.656 -5.117 0.585 -0.490 C18 PJI 24 PJI C19 C20 C 0 1 N N N -25.711 -42.797 -10.697 -4.850 1.768 -1.204 C19 PJI 25 PJI C20 C21 C 0 1 N N N -24.917 -43.091 -11.789 -5.556 2.891 -0.941 C20 PJI 26 PJI C21 C22 C 0 1 N N N -26.874 -43.357 -13.319 -4.408 4.396 -2.577 C21 PJI 27 PJI C22 C23 C 0 1 Y N N -24.452 -43.742 -13.921 -6.294 5.054 -1.032 C22 PJI 28 PJI C23 C24 C 0 1 Y N N -24.584 -44.119 -15.247 -6.475 6.397 -1.357 C23 PJI 29 PJI C24 C25 C 0 1 Y N N -23.434 -44.441 -15.944 -7.448 7.139 -0.718 C24 PJI 30 PJI C25 C26 C 0 1 Y N N -22.192 -44.376 -15.332 -8.248 6.557 0.248 C25 PJI 31 PJI C26 C27 C 0 1 Y N N -22.071 -44.000 -14.008 -8.074 5.224 0.575 C26 PJI 32 PJI C27 C28 C 0 1 Y N N -23.212 -43.677 -13.301 -7.104 4.480 -0.060 C27 PJI 33 PJI C28 C29 C 0 1 N N N -23.384 -43.198 -11.884 -6.675 3.037 0.069 C28 PJI 34 PJI C29 C30 C 0 1 N N N -22.779 -44.235 -10.921 -6.170 2.753 1.485 C29 PJI 35 PJI C30 C31 C 0 1 N N N -22.676 -41.841 -11.731 -7.832 2.101 -0.287 C30 PJI 36 PJI C31 C32 C 0 1 N N N -24.916 -40.430 -6.845 -5.850 -1.969 0.866 C31 PJI 37 PJI C32 C33 C 0 1 N N N -25.562 -39.286 -7.653 -5.748 -1.088 2.112 C32 PJI 38 PJI C33 C34 C 0 1 N N N -25.984 -41.230 -6.074 -7.169 -1.716 0.134 C33 PJI 39 PJI C34 C35 C 0 1 Y N N -23.877 -39.887 -5.897 -5.713 -3.431 1.229 C34 PJI 40 PJI C35 C36 C 0 1 Y N N -22.650 -40.451 -6.190 -4.573 -3.877 0.551 C35 PJI 41 PJI C36 C37 C 0 1 Y N N -21.480 -40.099 -5.523 -4.189 -5.219 0.692 C36 PJI 42 PJI C37 C38 C 0 1 Y N N -21.578 -39.143 -4.522 -4.927 -6.065 1.491 C37 PJI 43 PJI C38 C39 C 0 1 Y N N -22.811 -38.583 -4.195 -6.048 -5.604 2.158 C38 PJI 44 PJI C39 C40 C 0 1 Y N N -23.961 -38.953 -4.880 -6.441 -4.282 2.021 C39 PJI 45 PJI O2 O3 O 0 1 N N N -10.718 -39.186 -11.343 8.936 -1.230 -1.031 O2 PJI 46 PJI CL1 CL1 CL 0 0 N Y N -7.309 -33.745 -14.517 10.899 7.039 1.739 CL1 PJI 47 PJI H1 H1 H 0 1 N N N -10.282 -37.430 -13.316 8.867 2.801 -0.746 H1 PJI 48 PJI H2 H2 H 0 1 N N N -8.616 -37.354 -12.650 10.603 2.451 -0.930 H2 PJI 49 PJI H3 H3 H 0 1 N N N -8.700 -34.909 -12.633 9.167 2.996 1.707 H3 PJI 50 PJI H4 H4 H 0 1 N N N -10.403 -34.942 -13.204 10.902 2.646 1.524 H4 PJI 51 PJI H5 H5 H 0 1 N N N -9.768 -35.819 -15.337 11.158 4.659 0.099 H5 PJI 52 PJI H6 H6 H 0 1 N N N -8.098 -36.169 -14.773 9.422 5.010 0.283 H6 PJI 53 PJI H7 H7 H 0 1 N N N -15.188 -41.166 -11.766 5.418 -5.814 0.677 H7 PJI 54 PJI H8 H8 H 0 1 N N N -14.752 -42.853 -12.201 5.745 -4.116 1.095 H8 PJI 55 PJI H9 H9 H 0 1 N N N -10.554 -38.129 -9.581 8.313 0.593 -1.775 H9 PJI 56 PJI H10 H10 H 0 1 N N N -9.012 -38.466 -10.438 10.048 0.243 -1.959 H10 PJI 57 PJI H11 H11 H 0 1 N N N -9.603 -36.110 -10.669 10.347 0.438 0.495 H11 PJI 58 PJI H12 H12 H 0 1 N N N -11.220 -36.554 -11.312 8.612 0.788 0.679 H12 PJI 59 PJI H13 H13 H 0 1 N N N -11.429 -40.406 -9.826 9.506 -1.959 -2.878 H13 PJI 60 PJI H14 H14 H 0 1 N N N -9.758 -40.754 -10.387 7.771 -1.608 -2.694 H14 PJI 61 PJI H15 H15 H 0 1 N N N -11.081 -42.481 -11.282 9.254 -3.831 -1.222 H15 PJI 62 PJI H16 H16 H 0 1 N N N -10.828 -41.333 -12.640 8.279 -4.069 -2.691 H16 PJI 63 PJI H17 H17 H 0 1 N N N -13.024 -42.904 -10.491 6.738 -5.497 -1.437 H17 PJI 64 PJI H18 H18 H 0 1 N N N -13.532 -41.297 -9.872 7.714 -5.259 0.033 H18 PJI 65 PJI H19 H19 H 0 1 N N N -15.874 -43.618 -10.272 4.637 -4.195 -1.501 H19 PJI 66 PJI H20 H20 H 0 1 N N N -8.280 -34.088 -16.287 9.722 5.204 2.737 H20 PJI 67 PJI H21 H21 H 0 1 N N N -9.250 -33.302 -14.996 11.457 4.854 2.553 H21 PJI 68 PJI H22 H22 H 0 1 N N N -17.509 -43.530 -8.848 2.303 -2.864 -1.297 H22 PJI 69 PJI H23 H23 H 0 1 N N N -16.680 -42.479 -7.650 1.976 -4.563 -1.715 H23 PJI 70 PJI H24 H24 H 0 1 N N N -18.527 -40.793 -7.997 0.626 -4.812 0.349 H24 PJI 71 PJI H25 H25 H 0 1 N N N -19.017 -42.341 -7.228 0.952 -3.113 0.768 H25 PJI 72 PJI H26 H26 H 0 1 N N N -19.855 -43.164 -9.374 -0.149 -2.384 -1.331 H26 PJI 73 PJI H27 H27 H 0 1 N N N -19.318 -41.652 -10.181 -0.476 -4.083 -1.750 H27 PJI 74 PJI H28 H28 H 0 1 N N N -20.832 -40.395 -8.598 -1.779 -4.309 0.386 H28 PJI 75 PJI H29 H29 H 0 1 N N N -21.658 -41.450 -9.793 -1.533 -2.571 0.681 H29 PJI 76 PJI H30 H30 H 0 1 N N N -22.095 -43.130 -8.152 -2.970 -3.830 -1.698 H30 PJI 77 PJI H31 H31 H 0 1 N N N -20.977 -42.368 -6.970 -2.628 -2.092 -1.530 H31 PJI 78 PJI H33 H33 H 0 1 N N N -23.793 -42.945 -9.060 -3.463 -0.456 -1.311 H33 PJI 79 PJI H34 H34 H 0 1 N N N -26.074 -41.046 -9.519 -5.939 0.550 0.209 H34 PJI 80 PJI H35 H35 H 0 1 N N N -26.656 -43.317 -10.643 -4.081 1.780 -1.962 H35 PJI 81 PJI H38 H38 H 0 1 N N N -27.435 -43.052 -12.423 -4.847 4.206 -3.556 H38 PJI 82 PJI H39 H39 H 0 1 N N N -27.055 -42.634 -14.128 -4.102 5.441 -2.513 H39 PJI 83 PJI H40 H40 H 0 1 N N N -27.207 -44.356 -13.638 -3.538 3.754 -2.437 H40 PJI 84 PJI H41 H41 H 0 1 N N N -25.553 -44.160 -15.721 -5.853 6.859 -2.109 H41 PJI 85 PJI H42 H42 H 0 1 N N N -23.504 -44.747 -16.977 -7.584 8.179 -0.973 H42 PJI 86 PJI H43 H43 H 0 1 N N N -21.306 -44.623 -15.898 -9.008 7.142 0.745 H43 PJI 87 PJI H44 H44 H 0 1 N N N -21.101 -43.959 -13.535 -8.698 4.766 1.329 H44 PJI 88 PJI H45 H45 H 0 1 N N N -22.902 -43.889 -9.884 -6.975 2.926 2.199 H45 PJI 89 PJI H46 H46 H 0 1 N N N -23.294 -45.199 -11.050 -5.841 1.716 1.552 H46 PJI 90 PJI H47 H47 H 0 1 N N N -21.708 -44.359 -11.141 -5.334 3.415 1.712 H47 PJI 91 PJI H48 H48 H 0 1 N N N -22.794 -41.479 -10.699 -8.078 2.212 -1.342 H48 PJI 92 PJI H49 H49 H 0 1 N N N -21.606 -41.958 -11.958 -7.538 1.069 -0.089 H49 PJI 93 PJI H50 H50 H 0 1 N N N -23.121 -41.115 -12.427 -8.702 2.353 0.319 H50 PJI 94 PJI H51 H51 H 0 1 N N N -26.163 -38.656 -6.981 -5.740 -0.039 1.816 H51 PJI 95 PJI H52 H52 H 0 1 N N N -24.774 -38.677 -8.120 -6.603 -1.276 2.761 H52 PJI 96 PJI H53 H53 H 0 1 N N N -26.210 -39.710 -8.435 -4.827 -1.321 2.648 H53 PJI 97 PJI H54 H54 H 0 1 N N N -26.581 -40.544 -5.455 -7.246 -2.390 -0.720 H54 PJI 98 PJI H55 H55 H 0 1 N N N -26.642 -41.746 -6.789 -8.002 -1.894 0.814 H55 PJI 99 PJI H56 H56 H 0 1 N N N -25.491 -41.971 -5.428 -7.199 -0.684 -0.215 H56 PJI 100 PJI H57 H57 H 0 1 N N N -20.533 -40.552 -5.775 -3.316 -5.588 0.175 H57 PJI 101 PJI H58 H58 H 0 1 N N N -20.691 -38.830 -3.992 -4.627 -7.097 1.596 H58 PJI 102 PJI H59 H59 H 0 1 N N N -22.873 -37.854 -3.401 -6.619 -6.275 2.782 H59 PJI 103 PJI H60 H60 H 0 1 N N N -24.914 -38.515 -4.621 -7.318 -3.922 2.539 H60 PJI 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PJI C24 C25 DOUB Y N 1 PJI C24 C23 SING Y N 2 PJI C25 C26 SING Y N 3 PJI C23 C22 DOUB Y N 4 PJI C10 C9 SING N N 5 PJI C9 C8 SING N N 6 PJI C26 C27 DOUB Y N 7 PJI C22 C27 SING Y N 8 PJI C22 N2 SING N N 9 PJI C21 N2 SING N N 10 PJI C27 C28 SING N N 11 PJI C8 C7 SING N N 12 PJI N2 C20 SING N N 13 PJI C7 C6 SING N N 14 PJI C28 C20 SING N N 15 PJI C28 C30 SING N N 16 PJI C28 C29 SING N N 17 PJI C20 C19 DOUB N E 18 PJI O1 C3 SING N N 19 PJI O1 C2 SING N N 20 PJI C3 C4 SING N N 21 PJI C1 C2 SING N N 22 PJI C1 N SING N N 23 PJI O2 C4 SING N N 24 PJI O2 C5 SING N N 25 PJI C6 C5 SING N N 26 PJI C19 C18 SING N N 27 PJI N C SING N N 28 PJI O C DOUB N N 29 PJI C C11 SING N N 30 PJI C18 C17 DOUB N E 31 PJI C13 C14 SING N N 32 PJI C13 C12 SING N N 33 PJI C14 C15 SING N N 34 PJI C17 C16 SING N N 35 PJI C11 C12 SING N N 36 PJI C15 N1 SING N N 37 PJI C16 N1 DOUB N N 38 PJI C16 C31 SING N N 39 PJI C32 C31 SING N N 40 PJI N1 C35 SING N N 41 PJI C31 C33 SING N N 42 PJI C31 C34 SING N N 43 PJI C35 C34 DOUB Y N 44 PJI C35 C36 SING Y N 45 PJI C34 C39 SING Y N 46 PJI C36 C37 DOUB Y N 47 PJI C39 C38 DOUB Y N 48 PJI C37 C38 SING Y N 49 PJI C10 CL1 SING N N 50 PJI C7 H1 SING N N 51 PJI C7 H2 SING N N 52 PJI C8 H3 SING N N 53 PJI C8 H4 SING N N 54 PJI C9 H5 SING N N 55 PJI C9 H6 SING N N 56 PJI C1 H7 SING N N 57 PJI C1 H8 SING N N 58 PJI C5 H9 SING N N 59 PJI C5 H10 SING N N 60 PJI C6 H11 SING N N 61 PJI C6 H12 SING N N 62 PJI C4 H13 SING N N 63 PJI C4 H14 SING N N 64 PJI C3 H15 SING N N 65 PJI C3 H16 SING N N 66 PJI C2 H17 SING N N 67 PJI C2 H18 SING N N 68 PJI N H19 SING N N 69 PJI C10 H20 SING N N 70 PJI C10 H21 SING N N 71 PJI C11 H22 SING N N 72 PJI C11 H23 SING N N 73 PJI C12 H24 SING N N 74 PJI C12 H25 SING N N 75 PJI C13 H26 SING N N 76 PJI C13 H27 SING N N 77 PJI C14 H28 SING N N 78 PJI C14 H29 SING N N 79 PJI C15 H30 SING N N 80 PJI C15 H31 SING N N 81 PJI C17 H33 SING N N 82 PJI C18 H34 SING N N 83 PJI C19 H35 SING N N 84 PJI C21 H38 SING N N 85 PJI C21 H39 SING N N 86 PJI C21 H40 SING N N 87 PJI C23 H41 SING N N 88 PJI C24 H42 SING N N 89 PJI C25 H43 SING N N 90 PJI C26 H44 SING N N 91 PJI C29 H45 SING N N 92 PJI C29 H46 SING N N 93 PJI C29 H47 SING N N 94 PJI C30 H48 SING N N 95 PJI C30 H49 SING N N 96 PJI C30 H50 SING N N 97 PJI C32 H51 SING N N 98 PJI C32 H52 SING N N 99 PJI C32 H53 SING N N 100 PJI C33 H54 SING N N 101 PJI C33 H55 SING N N 102 PJI C33 H56 SING N N 103 PJI C36 H57 SING N N 104 PJI C37 H58 SING N N 105 PJI C38 H59 SING N N 106 PJI C39 H60 SING N N 107 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PJI InChI InChI 1.06 "InChI=1S/C40H56ClN3O3/c1-39(2)32-18-10-12-20-34(32)43(5)36(39)22-17-23-37-40(3,4)33-19-11-13-21-35(33)44(37)27-15-8-9-24-38(45)42-26-29-47-31-30-46-28-16-7-6-14-25-41/h10-13,17-23H,6-9,14-16,24-31H2,1-5H3/p+1" PJI InChIKey InChI 1.06 PMDIAZIQXAWRGJ-UHFFFAOYSA-O PJI SMILES_CANONICAL CACTVS 3.385 "CN\1c2ccccc2C(C)(C)C\1=C\C=C\C3=[N+](CCCCCC(=O)NCCOCCOCCCCCCCl)c4ccccc4C3(C)C" PJI SMILES CACTVS 3.385 "CN1c2ccccc2C(C)(C)C1=CC=CC3=[N+](CCCCCC(=O)NCCOCCOCCCCCCCl)c4ccccc4C3(C)C" PJI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1(c2ccccc2[N+](=C1/C=C/C=C3C(c4ccccc4N3C)(C)C)CCCCCC(=O)NCCOCCOCCCCCCCl)C" PJI SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(c2ccccc2[N+](=C1C=CC=C3C(c4ccccc4N3C)(C)C)CCCCCC(=O)NCCOCCOCCCCCCCl)C" # _pdbx_chem_comp_identifier.comp_id PJI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-[2-[2-(6-chloranylhexoxy)ethoxy]ethyl]-6-[3,3-dimethyl-2-[(~{E})-3-(1,3,3-trimethylindol-2-ylidene)prop-1-enyl]indol-1-ium-1-yl]hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PJI "Create component" 2022-10-04 PDBE PJI "Modify aromatic_flag" 2022-10-06 PDBE PJI "Initial release" 2023-07-26 RCSB #