data_PJR # _chem_comp.id PJR _chem_comp.name "[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 F2 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 568.652 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PJR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CZV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PJR C02 C1 C 0 1 N N N N N N -21.725 23.687 2.502 -1.427 -1.699 0.393 C02 PJR 1 PJR C04 C2 C 0 1 N N S N N N -21.222 25.993 1.724 1.003 -1.653 0.571 C04 PJR 2 PJR C05 C3 C 0 1 N N N N N N -21.481 26.965 0.541 1.370 -3.116 0.829 C05 PJR 3 PJR C06 C4 C 0 1 N N N N N N -20.716 26.561 -0.745 2.638 -3.180 1.683 C06 PJR 4 PJR C07 C5 C 0 1 N N N N N N -19.190 26.491 -0.521 2.351 -2.597 3.068 C07 PJR 5 PJR C08 C6 C 0 1 N N N N N N -20.969 27.537 -1.896 3.084 -4.637 1.825 C08 PJR 6 PJR C09 C7 C 0 1 N N N N N N -21.741 26.636 3.053 2.119 -0.981 -0.187 C09 PJR 7 PJR C11 C8 C 0 1 N N S N N N -21.241 27.798 5.193 4.223 0.246 -0.245 C11 PJR 8 PJR C12 C9 C 0 1 N N N N N N -20.583 27.032 6.399 4.838 1.291 0.688 C12 PJR 9 PJR C13 C10 C 0 1 N N S N N N -21.034 25.540 6.449 3.761 2.292 1.112 C13 PJR 10 PJR C14 C11 C 0 1 N N N N N N -20.393 24.756 7.622 4.351 3.353 2.016 C14 PJR 11 PJR C16 C12 C 0 1 N N N N N N -22.716 24.173 7.629 3.011 4.484 0.493 C16 PJR 12 PJR C17 C13 C 0 1 N N N N N N -22.553 25.434 6.754 3.243 3.082 -0.112 C17 PJR 13 PJR C19 C14 C 0 1 N N S N N N -20.781 29.275 5.186 5.313 -0.714 -0.725 C19 PJR 14 PJR C23 C15 C 0 1 N N N N N N -22.569 21.678 3.408 -3.813 -1.661 0.409 C23 PJR 15 PJR C24 C16 C 0 1 N N S N N N -22.252 20.239 3.023 -4.982 -1.446 -0.554 C24 PJR 16 PJR C25 C17 C 0 1 N N R N N N -23.434 19.339 2.652 -6.392 -1.421 0.041 C25 PJR 17 PJR C26 C18 C 0 1 N N N N N N -23.493 18.388 1.470 -7.410 -0.474 -0.596 C26 PJR 18 PJR C27 C19 C 0 1 N N N N N N -22.995 16.962 1.589 -6.902 0.966 -0.493 C27 PJR 19 PJR C28 C20 C 0 1 N N N N N N -23.615 16.106 0.520 -7.921 1.913 -1.130 C28 PJR 20 PJR C29 C21 C 0 1 N N N N N N -23.176 16.627 -0.873 -9.259 1.791 -0.397 C29 PJR 21 PJR C30 C22 C 0 1 N N N N N N -23.379 18.176 -1.037 -9.767 0.351 -0.501 C30 PJR 22 PJR C31 C23 C 0 1 N N N N N N -22.855 18.942 0.180 -8.748 -0.596 0.136 C31 PJR 23 PJR C34 C24 C 0 1 N N N N N N -22.696 19.114 3.931 -5.932 -2.623 -0.786 C34 PJR 24 PJR F32 F1 F 0 1 N N N N N N -21.890 16.295 -1.085 -9.086 2.128 0.949 F32 PJR 25 PJR F33 F2 F 0 1 N N N N N N -23.833 15.947 -1.849 -10.190 2.657 -0.980 F33 PJR 26 PJR N03 N1 N 0 1 N N N N N N -21.863 24.685 1.548 -0.230 -1.591 -0.218 N03 PJR 27 PJR N10 N2 N 0 1 N N N N N N -20.842 27.189 3.941 3.192 -0.506 0.475 N10 PJR 28 PJR N15 N3 N 0 1 N N N N N N -21.396 24.000 8.251 3.919 4.570 1.643 N15 PJR 29 PJR O01 O1 O 0 1 N N N N N N -20.953 23.754 3.449 -1.482 -1.939 1.583 O01 PJR 30 PJR O18 O2 O 0 1 N N N N N N -19.235 24.747 7.970 5.104 3.136 2.941 O18 PJR 31 PJR O20 O3 O 0 1 N N N N N N -21.238 29.887 6.353 4.722 -1.756 -1.503 O20 PJR 32 PJR O21 O4 O 0 1 N N N N N N -22.930 26.651 3.328 2.051 -0.868 -1.393 O21 PJR 33 PJR O22 O5 O 0 1 N N N N N N -22.516 22.583 2.328 -2.560 -1.537 -0.315 O22 PJR 34 PJR S1 S1 S 1 1 N Y N N N N -19.017 29.298 5.119 6.513 0.192 -1.740 S1 PJR 35 PJR H1 H1 H 0 1 N N N N N N -20.135 25.852 1.818 0.852 -1.143 1.523 H1 PJR 36 PJR H2 H2 H 0 1 N N N N N N -21.160 27.974 0.838 0.553 -3.608 1.355 H2 PJR 37 PJR H3 H3 H 0 1 N N N N N N -22.559 26.972 0.321 1.547 -3.619 -0.122 H3 PJR 38 PJR H4 H4 H 0 1 N N N N N N -21.065 25.564 -1.052 3.429 -2.603 1.203 H4 PJR 39 PJR H5 H5 H 0 1 N N N N N N -18.971 25.796 0.303 1.608 -3.213 3.574 H5 PJR 40 PJR H6 H6 H 0 1 N N N N N N -18.701 26.136 -1.440 3.270 -2.582 3.654 H6 PJR 41 PJR H7 H7 H 0 1 N N N N N N -18.811 27.492 -0.266 1.970 -1.581 2.963 H7 PJR 42 PJR H8 H8 H 0 1 N N N N N N -22.050 27.611 -2.083 2.293 -5.213 2.305 H8 PJR 43 PJR H9 H9 H 0 1 N N N N N N -20.574 28.528 -1.629 3.289 -5.052 0.838 H9 PJR 44 PJR H10 H10 H 0 1 N N N N N N -20.464 27.173 -2.803 3.987 -4.683 2.433 H10 PJR 45 PJR H11 H11 H 0 1 N N N N N N -22.335 27.763 5.306 3.775 0.745 -1.105 H11 PJR 46 PJR H12 H12 H 0 1 N N N N N N -19.489 27.070 6.292 5.243 0.797 1.571 H12 PJR 47 PJR H13 H13 H 0 1 N N N N N N -20.877 27.525 7.337 5.638 1.817 0.167 H13 PJR 48 PJR H14 H14 H 0 1 N N N N N N -20.805 25.046 5.493 2.939 1.778 1.611 H14 PJR 49 PJR H15 H15 H 0 1 N N N N N N -23.492 24.325 8.394 3.254 5.255 -0.238 H15 PJR 50 PJR H16 H16 H 0 1 N N N N N N -22.975 23.300 7.012 1.976 4.588 0.821 H16 PJR 51 PJR H17 H17 H 0 1 N N N N N N -22.898 26.326 7.298 3.995 3.117 -0.900 H17 PJR 52 PJR H18 H18 H 0 1 N N N N N N -23.125 25.330 5.820 2.310 2.658 -0.483 H18 PJR 53 PJR H19 H19 H 0 1 N N N N N N -21.151 29.778 4.280 5.821 -1.147 0.137 H19 PJR 54 PJR H20 H20 H 0 1 N N N N N N -21.842 22.002 4.167 -3.851 -0.913 1.200 H20 PJR 55 PJR H21 H21 H 0 1 N N N N N N -23.582 21.707 3.835 -3.882 -2.657 0.847 H21 PJR 56 PJR H22 H22 H 0 1 N N N N N N -21.322 20.078 2.458 -4.780 -0.788 -1.399 H22 PJR 57 PJR H23 H23 H 0 1 N N N N N N -24.395 19.848 2.813 -6.486 -1.558 1.118 H23 PJR 58 PJR H24 H24 H 0 1 N N N N N N -24.563 18.296 1.234 -7.545 -0.737 -1.645 H24 PJR 59 PJR H25 H25 H 0 1 N N N N N N -23.267 16.563 2.577 -6.767 1.229 0.556 H25 PJR 60 PJR H26 H26 H 0 1 N N N N N N -21.901 16.948 1.477 -5.949 1.053 -1.014 H26 PJR 61 PJR H27 H27 H 0 1 N N N N N N -24.711 16.153 0.601 -7.559 2.939 -1.056 H27 PJR 62 PJR H28 H28 H 0 1 N N N N N N -23.283 15.065 0.644 -8.056 1.650 -2.179 H28 PJR 63 PJR H29 H29 H 0 1 N N N N N N -22.838 18.515 -1.933 -10.720 0.264 0.021 H29 PJR 64 PJR H30 H30 H 0 1 N N N N N N -24.452 18.385 -1.156 -9.901 0.088 -1.550 H30 PJR 65 PJR H31 H31 H 0 1 N N N N N N -21.762 18.830 0.237 -9.110 -1.622 0.063 H31 PJR 66 PJR H32 H32 H 0 1 N N N N N N -23.110 20.007 0.077 -8.613 -0.333 1.185 H32 PJR 67 PJR H33 H33 H 0 1 N N N N N N -23.182 19.345 4.890 -6.355 -2.739 -1.784 H33 PJR 68 PJR H34 H34 H 0 1 N N N N N N -22.062 18.222 4.047 -5.723 -3.551 -0.253 H34 PJR 69 PJR H35 H35 H 0 1 N N N N N N -22.408 24.510 0.728 -0.185 -1.472 -1.179 H35 PJR 70 PJR H36 H36 H 0 1 N N N N N N -19.869 27.168 3.710 3.283 -0.661 1.428 H36 PJR 71 PJR H37 H37 H 0 1 N N N N N N -21.229 23.407 9.039 4.174 5.398 2.078 H37 PJR 72 PJR H38 H38 H 0 1 N N N N N N -22.188 29.865 6.372 4.069 -2.283 -1.022 H38 PJR 73 PJR O1 O6 O 0 1 N Y N N N N -18.796 31.028 5.500 7.303 1.123 -0.832 O1 PJR 74 PJR O2 O7 O 0 1 N Y N N N N ? ? ? 7.471 -0.814 -2.361 O2 PJR 75 PJR O3 O8 O 0 1 N Y N N N N ? ? ? 5.940 0.967 -2.785 O3 PJR 76 PJR H39 H39 H 0 1 N Y N N N N -17.869 31.235 5.509 7.971 1.649 -1.293 H39 PJR 77 PJR H40 H40 H 0 1 N Y N N N N ? ? ? 7.910 -1.388 -1.718 H40 PJR 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PJR C08 C06 SING N N 1 PJR F33 C29 SING N N 2 PJR F32 C29 SING N N 3 PJR C30 C29 SING N N 4 PJR C30 C31 SING N N 5 PJR C29 C28 SING N N 6 PJR C06 C07 SING N N 7 PJR C06 C05 SING N N 8 PJR C31 C26 SING N N 9 PJR C28 C27 SING N N 10 PJR C05 C04 SING N N 11 PJR C26 C27 SING N N 12 PJR C26 C25 SING N N 13 PJR N03 C04 SING N N 14 PJR N03 C02 SING N N 15 PJR C04 C09 SING N N 16 PJR O22 C02 SING N N 17 PJR O22 C23 SING N N 18 PJR C02 O01 DOUB N N 19 PJR C25 C24 SING N N 20 PJR C25 C34 SING N N 21 PJR C24 C23 SING N N 22 PJR C24 C34 SING N N 23 PJR C09 O21 DOUB N N 24 PJR C09 N10 SING N N 25 PJR N10 C11 SING N N 26 PJR S1 C19 SING N N 27 PJR C19 C11 SING N N 28 PJR C19 O20 SING N N 29 PJR C11 C12 SING N N 30 PJR C12 C13 SING N N 31 PJR C13 C17 SING N N 32 PJR C13 C14 SING N N 33 PJR C17 C16 SING N N 34 PJR C14 O18 DOUB N N 35 PJR C14 N15 SING N N 36 PJR C16 N15 SING N N 37 PJR C04 H1 SING N N 38 PJR C05 H2 SING N N 39 PJR C05 H3 SING N N 40 PJR C06 H4 SING N N 41 PJR C07 H5 SING N N 42 PJR C07 H6 SING N N 43 PJR C07 H7 SING N N 44 PJR C08 H8 SING N N 45 PJR C08 H9 SING N N 46 PJR C08 H10 SING N N 47 PJR C11 H11 SING N N 48 PJR C12 H12 SING N N 49 PJR C12 H13 SING N N 50 PJR C13 H14 SING N N 51 PJR C16 H15 SING N N 52 PJR C16 H16 SING N N 53 PJR C17 H17 SING N N 54 PJR C17 H18 SING N N 55 PJR C19 H19 SING N N 56 PJR C23 H20 SING N N 57 PJR C23 H21 SING N N 58 PJR C24 H22 SING N N 59 PJR C25 H23 SING N N 60 PJR C26 H24 SING N N 61 PJR C27 H25 SING N N 62 PJR C27 H26 SING N N 63 PJR C28 H27 SING N N 64 PJR C28 H28 SING N N 65 PJR C30 H29 SING N N 66 PJR C30 H30 SING N N 67 PJR C31 H31 SING N N 68 PJR C31 H32 SING N N 69 PJR C34 H33 SING N N 70 PJR C34 H34 SING N N 71 PJR N03 H35 SING N N 72 PJR N10 H36 SING N N 73 PJR N15 H37 SING N N 74 PJR O20 H38 SING N N 75 PJR S1 O1 SING N N 76 PJR S1 O2 SING N N 77 PJR S1 O3 DOUB N N 78 PJR O1 H39 SING N N 79 PJR O2 H40 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PJR InChI InChI 1.03 "InChI=1S/C24H38F2N3O8S/c1-13(2)9-18(21(31)28-19(22(32)38(34,35)36)11-15-5-8-27-20(15)30)29-23(33)37-12-16-10-17(16)14-3-6-24(25,26)7-4-14/h13-19,22,32H,3-12H2,1-2H3,(H3-2,27,28,29,30,31,33,34,35,36)/q-1/p+2/t15-,16+,17+,18-,19-,22-/m0/s1" PJR InChIKey InChI 1.03 ACNPODIUBZVYHB-WUOGMODZSA-P PJR SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]1C2CCC(F)(F)CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S+](O)(O)=O" PJR SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]1C2CCC(F)(F)CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S+](O)(O)=O" PJR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)[S+](=O)(O)O)NC(=O)OC[C@H]2C[C@@H]2C3CCC(CC3)(F)F" PJR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)[S+](=O)(O)O)NC(=O)OCC2CC2C3CCC(CC3)(F)F" # _pdbx_chem_comp_identifier.comp_id PJR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{S},2~{R})-2-[4,4-bis(fluoranyl)cyclohexyl]cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PJR "Create component" 2022-05-26 RCSB PJR "Initial release" 2022-06-22 RCSB PJR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PJR _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #