data_PK5 # _chem_comp.id PK5 _chem_comp.name "2-ethyl-~{N}-[[4-[4-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]piperidin-1-yl]phenyl]methyl]-1,2,3,5,6,7,8,8~{a}-octahydroimidazo[1,2-a]pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H37 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-23 _chem_comp.pdbx_modified_date 2020-08-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.074 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PK5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YT1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PK5 N3 N3 N 0 1 N N N 101.028 29.214 131.588 4.053 -2.156 0.380 N3 PK5 1 PK5 C10 C1 C 0 1 N N N 99.516 28.156 137.000 -1.596 -2.375 0.831 C10 PK5 2 PK5 C11 C2 C 0 1 Y N N 99.946 28.429 135.580 -0.095 -2.317 0.711 C11 PK5 3 PK5 C12 C3 C 0 1 Y N N 100.505 29.646 135.226 0.646 -1.624 1.651 C12 PK5 4 PK5 C13 C4 C 0 1 Y N N 100.892 29.903 133.923 2.022 -1.569 1.544 C13 PK5 5 PK5 C14 C5 C 0 1 Y N N 100.721 28.939 132.929 2.661 -2.210 0.491 C14 PK5 6 PK5 C15 C6 C 0 1 N N N 100.442 30.460 131.097 4.638 -1.373 1.476 C15 PK5 7 PK5 C16 C7 C 0 1 N N N 101.000 30.871 129.723 6.165 -1.456 1.405 C16 PK5 8 PK5 C17 C8 C 0 1 N N N 100.941 29.722 128.714 6.638 -0.912 0.054 C17 PK5 9 PK5 C18 C9 C 0 1 N N N 98.456 29.917 128.828 4.944 0.858 0.001 C18 PK5 10 PK5 C19 C10 C 0 1 N N N 97.207 29.757 128.361 4.599 2.159 -0.102 C19 PK5 11 PK5 C20 C11 C 0 1 N N N 95.949 30.159 129.158 3.152 2.573 -0.028 C20 PK5 12 PK5 C21 C12 C 0 1 N N N 97.040 29.156 127.054 5.614 3.129 -0.279 C21 PK5 13 PK5 C22 C13 C 0 1 N N N 99.493 28.935 126.891 7.219 1.431 -0.231 C22 PK5 14 PK5 C23 C14 C 0 1 N N N 101.509 28.433 129.301 5.976 -1.712 -1.070 C23 PK5 15 PK5 C24 C15 C 0 1 N N N 100.864 28.110 130.638 4.455 -1.622 -0.928 C24 PK5 16 PK5 C25 C16 C 0 1 Y N N 100.166 27.717 133.288 1.914 -2.905 -0.451 C25 PK5 17 PK5 C26 C17 C 0 1 Y N N 99.784 27.471 134.593 0.539 -2.961 -0.335 C26 PK5 18 PK5 N4 N4 N 0 1 N N N 99.584 29.523 128.139 6.263 0.500 -0.063 N4 PK5 19 PK5 N5 N5 N 0 1 N N N 98.213 28.791 126.418 6.902 2.735 -0.341 N5 PK5 20 PK5 O1 O1 O 0 1 N N N 95.956 28.956 126.509 5.327 4.309 -0.374 O1 PK5 21 PK5 O2 O2 O 0 1 N N N 100.470 28.545 126.257 8.385 1.091 -0.285 O2 PK5 22 PK5 H11 H1 H 0 1 N N N 99.945 27.314 137.563 -1.958 -3.311 0.405 H11 PK5 23 PK5 H10 H2 H 0 1 N N N 99.299 28.986 137.689 -1.879 -2.322 1.883 H10 PK5 24 PK5 H12 H4 H 0 1 N N N 100.641 30.407 135.980 0.148 -1.126 2.470 H12 PK5 25 PK5 H13 H5 H 0 1 N N N 101.330 30.858 133.673 2.600 -1.027 2.279 H13 PK5 26 PK5 H14 H6 H 0 1 N N N 100.658 31.261 131.820 4.326 -0.333 1.386 H14 PK5 27 PK5 H15 H7 H 0 1 N N N 99.353 30.328 131.011 4.297 -1.774 2.431 H15 PK5 28 PK5 H17 H8 H 0 1 N N N 102.048 31.184 129.844 6.599 -0.863 2.209 H17 PK5 29 PK5 H16 H9 H 0 1 N N N 100.408 31.714 129.337 6.478 -2.495 1.509 H16 PK5 30 PK5 H18 H10 H 0 1 N N N 101.603 30.004 127.882 7.721 -1.009 -0.018 H18 PK5 31 PK5 H19 H11 H 0 1 N N N 98.584 30.379 129.796 4.183 0.104 0.136 H19 PK5 32 PK5 H22 H12 H 0 1 N N N 96.249 30.597 130.121 2.884 2.775 1.009 H22 PK5 33 PK5 H21 H13 H 0 1 N N N 95.371 30.898 128.583 3.000 3.474 -0.624 H21 PK5 34 PK5 H20 H14 H 0 1 N N N 95.329 29.268 129.338 2.524 1.771 -0.416 H20 PK5 35 PK5 H24 H15 H 0 1 N N N 101.319 27.606 128.601 6.276 -1.301 -2.034 H24 PK5 36 PK5 H23 H16 H 0 1 N N N 102.593 28.551 129.444 6.286 -2.755 -1.006 H23 PK5 37 PK5 H25 H17 H 0 1 N N N 99.790 27.927 130.483 3.981 -2.203 -1.719 H25 PK5 38 PK5 H26 H18 H 0 1 N N N 101.334 27.207 131.054 4.144 -0.580 -1.006 H26 PK5 39 PK5 H27 H19 H 0 1 N N N 100.032 26.951 132.539 2.408 -3.405 -1.271 H27 PK5 40 PK5 H28 H20 H 0 1 N N N 99.351 26.515 134.848 -0.042 -3.502 -1.067 H28 PK5 41 PK5 H H39 H 0 1 N N N 98.118 28.376 125.513 7.604 3.394 -0.463 H PK5 42 PK5 N1 N1 N 0 1 N N N ? ? ? -2.188 -1.247 0.108 N1 PK5 43 PK5 C1 C18 C 0 1 N N N ? ? ? -3.526 -1.094 0.078 C1 PK5 44 PK5 C2 C19 C 0 1 N N N ? ? ? -4.135 0.066 -0.667 C2 PK5 45 PK5 O3 O3 O 0 1 N N N ? ? ? -4.241 -1.890 0.649 O3 PK5 46 PK5 C3 C20 C 0 1 N N N ? ? ? -4.646 -0.391 -2.055 C3 PK5 47 PK5 N6 N6 N 0 1 N N N ? ? ? -6.123 -0.195 -2.020 N6 PK5 48 PK5 C5 C21 C 0 1 N N N ? ? ? -6.439 -0.243 -0.581 C5 PK5 49 PK5 N2 N2 N 0 1 N N N ? ? ? -5.335 0.547 0.028 N2 PK5 50 PK5 C4 C22 C 0 1 N N N ? ? ? -4.024 0.469 -3.157 C4 PK5 51 PK5 C6 C23 C 0 1 N N N ? ? ? -4.441 -0.075 -4.525 C6 PK5 52 PK5 C7 C24 C 0 1 N N N ? ? ? -5.366 0.384 1.475 C7 PK5 53 PK5 C8 C25 C 0 1 N N N ? ? ? -6.666 1.020 1.992 C8 PK5 54 PK5 C9 C26 C 0 1 N N N ? ? ? -7.748 0.440 -0.209 C9 PK5 55 PK5 C27 C27 C 0 1 N N N ? ? ? -7.882 0.384 1.321 C27 PK5 56 PK5 H1 H21 H 0 1 N N N ? ? ? -1.616 -0.611 -0.349 H1 PK5 57 PK5 H2 H22 H 0 1 N N N ? ? ? -3.408 0.871 -0.775 H2 PK5 58 PK5 H3 H3 H 0 1 N N N ? ? ? -4.409 -1.442 -2.217 H3 PK5 59 PK5 H4 H24 H 0 1 N N N ? ? ? -6.379 0.697 -2.417 H4 PK5 60 PK5 H5 H25 H 0 1 N N N ? ? ? -6.417 -1.271 -0.221 H5 PK5 61 PK5 H6 H26 H 0 1 N N N ? ? ? -4.370 1.498 -3.054 H6 PK5 62 PK5 H7 H27 H 0 1 N N N ? ? ? -2.938 0.441 -3.071 H7 PK5 63 PK5 H8 H28 H 0 1 N N N ? ? ? -3.998 0.538 -5.310 H8 PK5 64 PK5 H9 H29 H 0 1 N N N ? ? ? -4.095 -1.103 -4.628 H9 PK5 65 PK5 H29 H30 H 0 1 N N N ? ? ? -5.528 -0.046 -4.612 H29 PK5 66 PK5 H30 H31 H 0 1 N N N ? ? ? -5.348 -0.676 1.728 H30 PK5 67 PK5 H31 H32 H 0 1 N N N ? ? ? -4.507 0.885 1.921 H31 PK5 68 PK5 H32 H38 H 0 1 N N N ? ? ? -6.733 0.874 3.070 H32 PK5 69 PK5 H34 H34 H 0 1 N N N ? ? ? -7.731 1.478 -0.540 H34 PK5 70 PK5 H35 H35 H 0 1 N N N ? ? ? -8.583 -0.084 -0.673 H35 PK5 71 PK5 H36 H36 H 0 1 N N N ? ? ? -7.963 -0.657 1.636 H36 PK5 72 PK5 H37 H37 H 0 1 N N N ? ? ? -8.781 0.921 1.623 H37 PK5 73 PK5 CL1 CL1 CL 0 0 N N N ? ? ? -6.647 2.787 1.632 CL1 PK5 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PK5 O2 C22 DOUB N N 1 PK5 N5 C22 SING N N 2 PK5 N5 C21 SING N N 3 PK5 O1 C21 DOUB N N 4 PK5 C22 N4 SING N N 5 PK5 C21 C19 SING N N 6 PK5 N4 C17 SING N N 7 PK5 N4 C18 SING N N 8 PK5 C19 C18 DOUB N N 9 PK5 C19 C20 SING N N 10 PK5 C17 C23 SING N N 11 PK5 C17 C16 SING N N 12 PK5 C23 C24 SING N N 13 PK5 C16 C15 SING N N 14 PK5 C24 N3 SING N N 15 PK5 C15 N3 SING N N 16 PK5 N3 C14 SING N N 17 PK5 C14 C25 DOUB Y N 18 PK5 C14 C13 SING Y N 19 PK5 C25 C26 SING Y N 20 PK5 C13 C12 DOUB Y N 21 PK5 C26 C11 DOUB Y N 22 PK5 C12 C11 SING Y N 23 PK5 C11 C10 SING N N 24 PK5 C10 H11 SING N N 25 PK5 C10 H10 SING N N 26 PK5 C12 H12 SING N N 27 PK5 C13 H13 SING N N 28 PK5 C15 H14 SING N N 29 PK5 C15 H15 SING N N 30 PK5 C16 H17 SING N N 31 PK5 C16 H16 SING N N 32 PK5 C17 H18 SING N N 33 PK5 C18 H19 SING N N 34 PK5 C20 H22 SING N N 35 PK5 C20 H21 SING N N 36 PK5 C20 H20 SING N N 37 PK5 C23 H24 SING N N 38 PK5 C23 H23 SING N N 39 PK5 C24 H25 SING N N 40 PK5 C24 H26 SING N N 41 PK5 C25 H27 SING N N 42 PK5 C26 H28 SING N N 43 PK5 N5 H SING N N 44 PK5 N1 C10 SING N N 45 PK5 C1 N1 SING N N 46 PK5 C2 C1 SING N N 47 PK5 O3 C1 DOUB N N 48 PK5 C3 N6 SING N N 49 PK5 N6 C5 SING N N 50 PK5 C5 N2 SING N N 51 PK5 N2 C2 SING N N 52 PK5 C2 C3 SING N N 53 PK5 C4 C3 SING N N 54 PK5 C6 C4 SING N N 55 PK5 C7 C8 SING N N 56 PK5 C9 C27 SING N N 57 PK5 C7 N2 SING N N 58 PK5 C9 C5 SING N N 59 PK5 C27 C8 SING N N 60 PK5 N1 H1 SING N N 61 PK5 C2 H2 SING N N 62 PK5 C3 H3 SING N N 63 PK5 N6 H4 SING N N 64 PK5 C5 H5 SING N N 65 PK5 C4 H6 SING N N 66 PK5 C4 H7 SING N N 67 PK5 C6 H8 SING N N 68 PK5 C6 H9 SING N N 69 PK5 C6 H29 SING N N 70 PK5 C7 H30 SING N N 71 PK5 C7 H31 SING N N 72 PK5 C8 H32 SING N N 73 PK5 C9 H34 SING N N 74 PK5 C9 H35 SING N N 75 PK5 C27 H36 SING N N 76 PK5 C27 H37 SING N N 77 PK5 CL1 C8 SING N N 78 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PK5 InChI InChI 1.03 "InChI=1S/C27H37ClN6O3/c1-3-22-24(34-16-19(28)6-9-23(34)30-22)26(36)29-14-18-4-7-20(8-5-18)32-12-10-21(11-13-32)33-15-17(2)25(35)31-27(33)37/h4-5,7-8,15,19,21-24,30H,3,6,9-14,16H2,1-2H3,(H,29,36)(H,31,35,37)" PK5 InChIKey InChI 1.03 ZMLCAZKJSUZKPA-UHFFFAOYSA-N PK5 SMILES_CANONICAL CACTVS 3.385 "CCC1NC2CCC(Cl)CN2C1C(=O)NCc3ccc(cc3)N4CCC(CC4)N5C=C(C)C(=O)NC5=O" PK5 SMILES CACTVS 3.385 "CCC1NC2CCC(Cl)CN2C1C(=O)NCc3ccc(cc3)N4CCC(CC4)N5C=C(C)C(=O)NC5=O" PK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC1C(N2CC(CCC2N1)Cl)C(=O)NCc3ccc(cc3)N4CCC(CC4)N5C=C(C(=O)NC5=O)C" PK5 SMILES "OpenEye OEToolkits" 2.0.7 "CCC1C(N2CC(CCC2N1)Cl)C(=O)NCc3ccc(cc3)N4CCC(CC4)N5C=C(C(=O)NC5=O)C" # _pdbx_chem_comp_identifier.comp_id PK5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-chloranyl-2-ethyl-~{N}-[[4-[4-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]piperidin-1-yl]phenyl]methyl]-1,2,3,5,6,7,8,8~{a}-octahydroimidazo[1,2-a]pyridine-3-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PK5 "Create component" 2020-04-23 PDBE PK5 "Initial release" 2020-09-02 RCSB ##