data_PKF # _chem_comp.id PKF _chem_comp.name "CARBOBENZOXY-PRO-LYS-PHE-Y(PO2)-ALA-PRO-OME" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H52 N6 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 743.807 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PKF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QJI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PKF C1 C1 C 0 1 N N N 18.835 14.201 23.889 0.337 2.669 12.498 C1 PKF 1 PKF O1 O1 O 0 1 N N N 17.902 14.317 23.072 0.329 3.497 13.406 O1 PKF 2 PKF O2 O2 O 0 1 N N N 19.349 13.084 24.012 0.871 2.902 11.259 O2 PKF 3 PKF C2 C2 C 0 1 N N N 19.015 11.889 23.265 1.440 4.200 11.056 C2 PKF 4 PKF C3 C3 C 0 1 Y N N 17.617 11.395 23.575 1.975 4.287 9.657 C3 PKF 5 PKF C4 C4 C 0 1 Y N N 16.634 11.347 22.585 3.290 3.918 9.399 C4 PKF 6 PKF C5 C5 C 0 1 Y N N 17.283 10.982 24.863 1.151 4.737 8.632 C5 PKF 7 PKF C6 C6 C 0 1 Y N N 15.336 10.894 22.873 3.788 3.998 8.098 C6 PKF 8 PKF C7 C7 C 0 1 Y N N 15.983 10.525 25.166 1.648 4.818 7.331 C7 PKF 9 PKF C8 C8 C 0 1 Y N N 15.010 10.482 24.164 2.966 4.448 7.064 C8 PKF 10 PKF N1 N1 N 0 1 N N N 19.423 15.384 24.511 -0.192 1.393 12.603 N1 PKF 11 PKF C9 C9 C 0 1 N N N 19.864 15.158 25.900 -0.832 0.842 13.792 C9 PKF 12 PKF C10 C10 C 0 1 N N R 18.587 16.579 24.423 -0.086 0.400 11.543 C10 PKF 13 PKF C11 C11 C 0 1 N N N 18.704 17.186 25.827 -0.469 -0.915 12.215 C11 PKF 14 PKF C12 C12 C 0 1 N N N 19.978 16.570 26.377 -1.419 -0.482 13.329 C12 PKF 15 PKF C13 C13 C 0 1 N N N 19.103 17.557 23.372 -1.057 0.662 10.407 C13 PKF 16 PKF O3 O3 O 0 1 N N N 20.017 17.245 22.621 -2.107 1.251 10.634 O3 PKF 17 PKF N2 N2 N 0 1 N N N 18.442 18.707 23.288 -0.635 0.185 9.177 N2 PKF 18 PKF C14 C14 C 0 1 N N N 17.995 18.064 20.120 1.263 1.313 5.274 C14 PKF 19 PKF C15 C15 C 0 1 N N R 18.840 19.769 22.369 -1.403 0.325 7.968 C15 PKF 20 PKF C16 C16 C 0 1 N N N 17.678 20.154 21.464 -0.661 1.144 6.905 C16 PKF 21 PKF C17 C17 C 0 1 N N N 17.796 19.562 20.082 0.612 0.472 6.374 C17 PKF 22 PKF C18 C18 C 0 1 N N N 19.259 20.947 23.222 -1.803 -1.061 7.471 C18 PKF 23 PKF O4 O4 O 0 1 N N N 18.680 21.181 24.284 -1.409 -2.100 7.996 O4 PKF 24 PKF C19 C19 C 0 1 N N N 18.375 17.554 18.754 2.506 0.628 4.727 C19 PKF 25 PKF N3 N3 N 1 1 N N N 18.532 16.076 18.776 3.076 1.455 3.637 N3 PKF 26 PKF N20 N20 N 0 1 N N N 20.948 25.538 23.943 -4.058 -3.040 3.218 N20 PKF 27 PKF O5 O5 O 0 1 N N N 18.690 24.401 22.912 -1.885 -1.583 3.518 O5 PKF 28 PKF O6 O6 O 0 1 N N N 20.711 24.473 21.523 -4.164 -0.412 3.838 O6 PKF 29 PKF C21 C21 C 0 1 N N N 22.086 27.748 24.150 -5.533 -3.815 1.562 C21 PKF 30 PKF C22 C22 C 0 1 Y N N 22.714 20.171 23.953 -5.652 -0.554 7.444 C22 PKF 31 PKF C23 C23 C 0 1 Y N N 22.982 19.044 24.717 -6.629 0.441 7.416 C23 PKF 32 PKF C24 C24 C 0 1 Y N N 23.233 19.180 26.079 -7.546 0.488 6.366 C24 PKF 33 PKF N4 N4 N 0 1 N N N 20.281 21.666 22.784 -2.677 -0.995 6.395 N4 PKF 34 PKF C25 C25 C 0 1 N N S 20.773 22.787 23.555 -3.247 -2.169 5.742 C25 PKF 35 PKF C26 C26 C 0 1 N N N 22.284 22.646 23.714 -4.547 -2.565 6.452 C26 PKF 36 PKF C27 C27 C 0 1 Y N N 22.682 21.443 24.530 -5.603 -1.491 6.422 C27 PKF 37 PKF C28 C28 C 0 1 N N S 21.069 26.947 23.344 -4.312 -2.959 1.788 C28 PKF 38 PKF C29 C29 C 0 1 N N N 19.722 27.660 23.359 -3.133 -3.456 0.974 C29 PKF 39 PKF O7 O7 O 0 1 N N N 22.056 27.785 25.373 -5.716 -4.829 2.237 O7 PKF 40 PKF C30 C30 C 0 1 Y N N 22.944 21.568 25.891 -6.509 -1.455 5.373 C30 PKF 41 PKF C31 C31 C 0 1 Y N N 23.215 20.440 26.666 -7.486 -0.460 5.344 C31 PKF 42 PKF P1 P1 P 0 1 N N S 20.296 24.305 22.953 -3.433 -1.719 3.994 P1 PKF 43 PKF C32 C32 C 0 1 N N N 23.582 30.213 27.182 -8.546 -7.095 -1.449 C32 PKF 44 PKF O8 O8 O 0 1 N N N 23.876 30.854 26.097 -8.632 -5.872 -0.711 O8 PKF 45 PKF N5 N5 N 0 1 N N N 23.015 28.417 23.450 -6.388 -3.382 0.560 N5 PKF 46 PKF C33 C33 C 0 1 N N N 23.223 28.506 21.997 -6.210 -2.189 -0.263 C33 PKF 47 PKF C34 C34 C 0 1 N N S 23.969 29.259 24.188 -7.687 -3.997 0.320 C34 PKF 48 PKF C35 C35 C 0 1 N N N 24.758 29.941 23.059 -8.456 -2.969 -0.501 C35 PKF 49 PKF C36 C36 C 0 1 N N N 23.838 29.878 21.852 -7.358 -2.227 -1.259 C36 PKF 50 PKF C37 C37 C 0 1 N N N 23.270 30.266 25.096 -7.443 -5.257 -0.454 C37 PKF 51 PKF O9 O9 O 0 1 N N N 22.085 30.566 24.937 -6.334 -5.651 -0.791 O9 PKF 52 PKF H22A 2H2 H 0 0 N N N 19.076 12.118 22.191 2.237 4.359 11.791 H22A PKF 53 PKF H21 1H2 H 0 1 N N N 19.726 11.100 23.551 0.671 4.961 11.225 H21 PKF 54 PKF H4 H4 H 0 1 N N N 16.876 11.663 21.581 3.937 3.566 10.198 H4 PKF 55 PKF H5 H5 H 0 1 N N N 18.031 11.012 25.642 0.122 5.027 8.830 H5 PKF 56 PKF H6 H6 H 0 1 N N N 14.590 10.865 22.093 4.814 3.711 7.890 H6 PKF 57 PKF H7 H7 H 0 1 N N N 15.741 10.209 26.170 1.009 5.168 6.526 H7 PKF 58 PKF H8 H8 H 0 1 N N N 14.013 10.132 24.388 3.353 4.511 6.051 H8 PKF 59 PKF H92 2H9 H 0 1 N N N 19.140 14.571 26.484 -1.586 1.530 14.183 H92 PKF 60 PKF H91 1H9 H 0 1 N N N 20.787 14.567 25.996 -0.056 0.695 14.551 H91 PKF 61 PKF H10 H10 H 0 1 N N N 17.554 16.350 24.123 0.925 0.387 11.125 H10 PKF 62 PKF H112 2H11 H 0 0 N N N 18.772 18.283 25.787 0.422 -1.374 12.660 H112 PKF 63 PKF H111 1H11 H 0 0 N N N 17.825 16.977 26.455 -0.927 -1.645 11.541 H111 PKF 64 PKF H122 2H12 H 0 0 N N N 20.029 16.634 27.474 -2.424 -0.325 12.920 H122 PKF 65 PKF H121 1H12 H 0 0 N N N 20.895 17.078 26.044 -1.491 -1.216 14.137 H121 PKF 66 PKF H2 H2 H 0 1 N N N 17.645 18.850 23.874 0.265 -0.290 9.126 H2 PKF 67 PKF H142 2H14 H 0 0 N N N 18.798 17.823 20.833 1.529 2.299 5.675 H142 PKF 68 PKF H141 1H14 H 0 0 N N N 17.056 17.585 20.434 0.542 1.480 4.464 H141 PKF 69 PKF H15 H15 H 0 1 N N N 19.664 19.439 21.719 -2.319 0.857 8.253 H15 PKF 70 PKF H162 2H16 H 0 0 N N N 16.746 19.788 21.920 -0.400 2.126 7.317 H162 PKF 71 PKF H161 1H16 H 0 0 N N N 17.684 21.249 21.360 -1.338 1.327 6.061 H161 PKF 72 PKF H172 2H17 H 0 0 N N N 18.661 20.018 19.577 0.371 -0.521 5.976 H172 PKF 73 PKF H171 1H17 H 0 0 N N N 16.859 19.767 19.543 1.331 0.327 7.187 H171 PKF 74 PKF H192 2H19 H 0 0 N N N 17.586 17.822 18.036 2.279 -0.352 4.297 H192 PKF 75 PKF H191 1H19 H 0 0 N N N 19.331 18.010 18.456 3.285 0.525 5.488 H191 PKF 76 PKF H33 3H3 H 0 1 N N N 18.567 15.730 17.838 3.808 2.080 3.993 H33 PKF 77 PKF H32 2H3 H 0 1 N N N 19.379 15.838 19.251 2.352 2.034 3.198 H32 PKF 78 PKF H31A 1H3 H 0 0 N N N 17.755 15.666 19.253 3.493 0.865 2.907 H31A PKF 79 PKF H20 H20 H 0 1 N N N 21.872 25.250 24.193 -3.598 -3.929 3.412 H20 PKF 80 PKF H5O H5O H 0 1 N N N 18.351 24.420 23.799 -1.696 -1.386 2.576 H5O PKF 81 PKF H22 H22 H 0 1 N N N 22.527 20.063 22.895 -4.941 -0.583 8.266 H22 PKF 82 PKF H23 H23 H 0 1 N N N 22.996 18.067 24.257 -6.676 1.179 8.211 H23 PKF 83 PKF H24 H24 H 0 1 N N N 23.442 18.307 26.680 -8.307 1.262 6.344 H24 PKF 84 PKF H4N1 1H4N H 0 0 N N N 20.716 21.433 21.914 -2.991 -0.085 6.072 H4N1 PKF 85 PKF H25 H25 H 0 1 N N N 20.303 22.755 24.549 -2.520 -2.987 5.797 H25 PKF 86 PKF H262 2H26 H 0 0 N N N 22.729 22.547 22.713 -4.339 -2.809 7.503 H262 PKF 87 PKF H261 1H26 H 0 0 N N N 22.645 23.539 24.245 -4.944 -3.488 6.011 H261 PKF 88 PKF H28 H28 H 0 1 N N N 21.402 26.862 22.299 -4.551 -1.920 1.544 H28 PKF 89 PKF H293 3H29 H 0 0 N N N 19.409 27.832 24.399 -3.397 -4.341 0.383 H293 PKF 90 PKF H292 2H29 H 0 0 N N N 19.812 28.625 22.839 -2.787 -2.684 0.279 H292 PKF 91 PKF H291 1H29 H 0 0 N N N 18.972 27.037 22.849 -2.298 -3.732 1.627 H291 PKF 92 PKF H30 H30 H 0 1 N N N 22.938 22.545 26.351 -6.470 -2.189 4.572 H30 PKF 93 PKF H31 H31 H 0 1 N N N 23.411 20.546 27.723 -8.201 -0.424 4.527 H31 PKF 94 PKF H323 3H32 H 0 0 N N N 23.499 29.138 26.962 -9.218 -7.051 -2.309 H323 PKF 95 PKF H322 2H32 H 0 0 N N N 24.373 30.374 27.929 -8.819 -7.932 -0.802 H322 PKF 96 PKF H321 1H32 H 0 0 N N N 22.624 30.582 27.577 -7.519 -7.228 -1.798 H321 PKF 97 PKF H332 2H33 H 0 0 N N N 23.889 27.713 21.626 -5.227 -2.196 -0.744 H332 PKF 98 PKF H331 1H33 H 0 0 N N N 22.302 28.372 21.411 -6.278 -1.315 0.395 H331 PKF 99 PKF H34 H34 H 0 1 N N N 24.607 28.687 24.878 -8.182 -4.257 1.260 H34 PKF 100 PKF H352 2H35 H 0 0 N N N 25.000 30.982 23.318 -8.970 -2.268 0.169 H352 PKF 101 PKF H351 1H35 H 0 0 N N N 25.722 29.446 22.871 -9.198 -3.409 -1.174 H351 PKF 102 PKF H362 2H36 H 0 0 N N N 24.390 29.985 20.906 -7.067 -2.801 -2.147 H362 PKF 103 PKF H361 1H36 H 0 0 N N N 23.098 30.691 21.819 -7.664 -1.229 -1.587 H361 PKF 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PKF C1 O1 DOUB N N 1 PKF C1 O2 SING N N 2 PKF C1 N1 SING N N 3 PKF O2 C2 SING N N 4 PKF C2 C3 SING N N 5 PKF C2 H22A SING N N 6 PKF C2 H21 SING N N 7 PKF C3 C4 DOUB Y N 8 PKF C3 C5 SING Y N 9 PKF C4 C6 SING Y N 10 PKF C4 H4 SING N N 11 PKF C5 C7 DOUB Y N 12 PKF C5 H5 SING N N 13 PKF C6 C8 DOUB Y N 14 PKF C6 H6 SING N N 15 PKF C7 C8 SING Y N 16 PKF C7 H7 SING N N 17 PKF C8 H8 SING N N 18 PKF N1 C9 SING N N 19 PKF N1 C10 SING N N 20 PKF C9 C12 SING N N 21 PKF C9 H92 SING N N 22 PKF C9 H91 SING N N 23 PKF C10 C11 SING N N 24 PKF C10 C13 SING N N 25 PKF C10 H10 SING N N 26 PKF C11 C12 SING N N 27 PKF C11 H112 SING N N 28 PKF C11 H111 SING N N 29 PKF C12 H122 SING N N 30 PKF C12 H121 SING N N 31 PKF C13 O3 DOUB N N 32 PKF C13 N2 SING N N 33 PKF N2 C15 SING N N 34 PKF N2 H2 SING N N 35 PKF C14 C17 SING N N 36 PKF C14 C19 SING N N 37 PKF C14 H142 SING N N 38 PKF C14 H141 SING N N 39 PKF C15 C16 SING N N 40 PKF C15 C18 SING N N 41 PKF C15 H15 SING N N 42 PKF C16 C17 SING N N 43 PKF C16 H162 SING N N 44 PKF C16 H161 SING N N 45 PKF C17 H172 SING N N 46 PKF C17 H171 SING N N 47 PKF C18 O4 DOUB N N 48 PKF C18 N4 SING N N 49 PKF C19 N3 SING N N 50 PKF C19 H192 SING N N 51 PKF C19 H191 SING N N 52 PKF N3 H33 SING N N 53 PKF N3 H32 SING N N 54 PKF N3 H31A SING N N 55 PKF N20 C28 SING N N 56 PKF N20 P1 SING N N 57 PKF N20 H20 SING N N 58 PKF O5 P1 SING N N 59 PKF O5 H5O SING N N 60 PKF O6 P1 DOUB N N 61 PKF C21 C28 SING N N 62 PKF C21 O7 DOUB N N 63 PKF C21 N5 SING N N 64 PKF C22 C23 DOUB Y N 65 PKF C22 C27 SING Y N 66 PKF C22 H22 SING N N 67 PKF C23 C24 SING Y N 68 PKF C23 H23 SING N N 69 PKF C24 C31 DOUB Y N 70 PKF C24 H24 SING N N 71 PKF N4 C25 SING N N 72 PKF N4 H4N1 SING N N 73 PKF C25 C26 SING N N 74 PKF C25 P1 SING N N 75 PKF C25 H25 SING N N 76 PKF C26 C27 SING N N 77 PKF C26 H262 SING N N 78 PKF C26 H261 SING N N 79 PKF C27 C30 DOUB Y N 80 PKF C28 C29 SING N N 81 PKF C28 H28 SING N N 82 PKF C29 H293 SING N N 83 PKF C29 H292 SING N N 84 PKF C29 H291 SING N N 85 PKF C30 C31 SING Y N 86 PKF C30 H30 SING N N 87 PKF C31 H31 SING N N 88 PKF C32 O8 SING N N 89 PKF C32 H323 SING N N 90 PKF C32 H322 SING N N 91 PKF C32 H321 SING N N 92 PKF O8 C37 SING N N 93 PKF N5 C33 SING N N 94 PKF N5 C34 SING N N 95 PKF C33 C36 SING N N 96 PKF C33 H332 SING N N 97 PKF C33 H331 SING N N 98 PKF C34 C35 SING N N 99 PKF C34 C37 SING N N 100 PKF C34 H34 SING N N 101 PKF C35 C36 SING N N 102 PKF C35 H352 SING N N 103 PKF C35 H351 SING N N 104 PKF C36 H362 SING N N 105 PKF C36 H361 SING N N 106 PKF C37 O9 DOUB N N 107 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PKF SMILES ACDLabs 10.04 "O=C(NC(C(=O)NC(Cc1ccccc1)P(=O)(O)NC(C(=O)N2C(C(=O)OC)CCC2)C)CCCC[NH3+])C4N(C(=O)OCc3ccccc3)CCC4" PKF SMILES_CANONICAL CACTVS 3.341 "COC(=O)[C@@H]1CCCN1C(=O)[C@H](C)N[P@@](O)(=O)[C@H](Cc2ccccc2)NC(=O)[C@H](CCCC[NH3+])NC(=O)[C@@H]3CCCN3C(=O)OCc4ccccc4" PKF SMILES CACTVS 3.341 "COC(=O)[CH]1CCCN1C(=O)[CH](C)N[P](O)(=O)[CH](Cc2ccccc2)NC(=O)[CH](CCCC[NH3+])NC(=O)[CH]3CCCN3C(=O)OCc4ccccc4" PKF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](C(=O)N1CCC[C@H]1C(=O)OC)N[P@@](=O)([C@H](Cc2ccccc2)NC(=O)[C@H](CCCC[NH3+])NC(=O)[C@@H]3CCCN3C(=O)OCc4ccccc4)O" PKF SMILES "OpenEye OEToolkits" 1.5.0 "CC(C(=O)N1CCCC1C(=O)OC)NP(=O)(C(Cc2ccccc2)NC(=O)C(CCCC[NH3+])NC(=O)C3CCCN3C(=O)OCc4ccccc4)O" PKF InChI InChI 1.03 ;InChI=1S/C36H51N6O9P/c1-25(34(45)41-21-12-19-30(41)35(46)50-2)40-52(48,49)31(23-26-13-5-3-6-14-26)39-32(43)28(17-9-10-20-37)38-33(44)29-18-11-22-42(29)36(47)51-24-27-15-7-4-8-16-27/h3-8,13-16,25,28-31H,9-12,17-24,37H2,1-2H3,(H,38,44)(H,39,43)(H2,40,48,49)/p+1/t25-,28-,29-,30-,31+/m0/s1 ; PKF InChIKey InChI 1.03 JVJRALIDWYDPLY-HEPRJOMSSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PKF "SYSTEMATIC NAME" ACDLabs 10.04 "methyl N-[(R)-[(1R)-1-({1-[(benzyloxy)carbonyl]-L-prolyl-6-ammonio-L-norleucyl}amino)-2-phenylethyl](hydroxy)phosphoryl]-L-alanyl-L-prolinate" PKF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(5S)-6-[[(1R)-1-[hydroxy-[[(2S)-1-[(2S)-2-methoxycarbonylpyrrolidin-1-yl]-1-oxo-propan-2-yl]amino]phosphoryl]-2-phenyl-ethyl]amino]-6-oxo-5-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]hexyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PKF "Create component" 1999-07-08 EBI PKF "Modify descriptor" 2011-06-04 RCSB #