data_PKH # _chem_comp.id PKH _chem_comp.name "~{N}-[(1~{R},2~{R},4~{S},7~{E})-7-[azanyl(sulfanyl)methylidene]-7$l^{4}-azabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-(6-cyclopropylpyrazin-2-yl)benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 Cl N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-26 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 428.958 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PKH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8D0A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PKH C15 C1 C 0 1 N N S 7.313 -10.205 -8.369 5.310 -1.520 -0.472 C15 PKH 1 PKH C17 C2 C 0 1 N N N 8.065 -8.418 -6.973 3.706 -1.208 1.339 C17 PKH 2 PKH C20 C3 C 0 1 N N N 8.294 -11.213 -7.719 4.259 -1.051 -1.523 C20 PKH 3 PKH C22 C4 C 0 1 N N N 9.560 -10.422 -4.250 1.126 0.645 -0.491 C22 PKH 4 PKH C24 C5 C 0 1 Y N N 10.826 -10.023 -3.661 -0.298 0.274 -0.363 C24 PKH 5 PKH C26 C6 C 0 1 Y N N 12.678 -8.465 -3.548 -2.004 -1.415 -0.282 C26 PKH 6 PKH C28 C7 C 0 1 Y N N 12.504 -10.230 -1.913 -2.597 0.919 -0.080 C28 PKH 7 PKH C12 C8 C 0 1 N N N 5.184 -9.299 -7.486 6.690 0.388 0.515 C12 PKH 8 PKH C16 C9 C 0 1 N N N 8.044 -8.854 -8.450 4.492 -2.313 0.592 C16 PKH 9 PKH C18 C10 C 0 1 N N R 7.297 -9.571 -6.273 4.155 0.102 0.624 C18 PKH 10 PKH C19 C11 C 0 1 N N R 8.166 -10.847 -6.230 3.473 0.054 -0.776 C19 PKH 11 PKH C25 C12 C 0 1 Y N N 11.526 -8.920 -4.171 -0.677 -1.070 -0.401 C25 PKH 12 PKH C27 C13 C 0 1 Y N N 13.170 -9.100 -2.397 -2.973 -0.423 -0.124 C27 PKH 13 PKH C29 C14 C 0 1 Y N N 11.346 -10.692 -2.539 -1.268 1.267 -0.199 C29 PKH 14 PKH C31 C15 C 0 1 Y N N 14.322 -8.543 -1.694 -4.402 -0.796 -0.002 C31 PKH 15 PKH C32 C16 C 0 1 Y N N 15.355 -9.348 -1.184 -4.772 -2.140 0.064 C32 PKH 16 PKH C34 C17 C 0 1 Y N N 16.382 -7.515 -0.329 -6.971 -1.523 0.218 C34 PKH 17 PKH C35 C18 C 0 1 Y N N 15.367 -6.699 -0.845 -6.608 -0.188 0.157 C35 PKH 18 PKH C37 C19 C 0 1 N N N 15.308 -5.195 -0.654 -7.667 0.882 0.215 C37 PKH 19 PKH C38 C20 C 0 1 N N N 16.007 -4.398 -1.718 -8.903 0.607 1.074 C38 PKH 20 PKH C39 C21 C 0 1 N N N 16.551 -4.420 -0.309 -9.011 0.583 -0.452 C39 PKH 21 PKH N13 N1 N 0 1 N N N 4.611 -8.816 -6.462 6.674 1.569 1.221 N13 PKH 22 PKH N14 N2 N 1 1 N N N 6.369 -9.980 -7.303 5.574 -0.238 0.265 N14 PKH 23 PKH N21 N3 N 0 1 N N N 9.477 -10.619 -5.603 2.060 -0.314 -0.649 N21 PKH 24 PKH N33 N4 N 0 1 Y N N 16.381 -8.841 -0.503 -6.046 -2.467 0.173 N33 PKH 25 PKH N36 N5 N 0 1 Y N N 14.351 -7.216 -1.524 -5.336 0.148 0.049 N36 PKH 26 PKH O23 O1 O 0 1 N N N 8.531 -10.551 -3.602 1.455 1.814 -0.453 O23 PKH 27 PKH CL30 CL1 CL 0 0 N N N 10.578 -12.112 -1.895 -0.800 2.938 -0.144 CL30 PKH 28 PKH H1 H1 H 0 1 N N N 6.888 -10.546 -9.325 6.187 -2.025 -0.877 H1 PKH 29 PKH H2 H2 H 0 1 N N N 9.095 -8.340 -6.596 2.632 -1.358 1.226 H2 PKH 30 PKH H3 H3 H 0 1 N N N 7.550 -7.456 -6.835 3.980 -1.184 2.393 H3 PKH 31 PKH H4 H4 H 0 1 N N N 7.985 -12.252 -7.906 4.754 -0.642 -2.404 H4 PKH 32 PKH H5 H5 H 0 1 N N N 9.322 -11.065 -8.082 3.599 -1.873 -1.798 H5 PKH 33 PKH H6 H6 H 0 1 N N N 13.203 -7.612 -3.953 -2.297 -2.454 -0.316 H6 PKH 34 PKH H7 H7 H 0 1 N N N 12.889 -10.749 -1.048 -3.347 1.686 0.043 H7 PKH 35 PKH H9 H9 H 0 1 N N N 9.063 -8.973 -8.847 3.809 -3.012 0.109 H9 PKH 36 PKH H10 H10 H 0 1 N N N 7.490 -8.135 -9.072 5.160 -2.838 1.276 H10 PKH 37 PKH H11 H11 H 0 1 N N N 6.853 -9.294 -5.306 4.004 1.022 1.190 H11 PKH 38 PKH H12 H12 H 0 1 N N N 7.621 -11.643 -5.702 3.577 1.011 -1.287 H12 PKH 39 PKH H13 H13 H 0 1 N N N 11.164 -8.420 -5.057 0.072 -1.839 -0.524 H13 PKH 40 PKH H14 H14 H 0 1 N N N 15.315 -10.414 -1.350 -4.017 -2.911 0.027 H14 PKH 41 PKH H15 H15 H 0 1 N N N 17.189 -7.060 0.226 -8.012 -1.794 0.308 H15 PKH 42 PKH H16 H16 H 0 1 N N N 14.357 -4.789 -0.280 -7.301 1.908 0.173 H16 PKH 43 PKH H17 H17 H 0 1 N N N 16.549 -4.913 -2.525 -8.950 -0.348 1.597 H17 PKH 44 PKH H18 H18 H 0 1 N N N 15.543 -3.483 -2.114 -9.351 1.452 1.597 H18 PKH 45 PKH H19 H19 H 0 1 N N N 17.488 -4.952 -0.089 -9.530 1.413 -0.933 H19 PKH 46 PKH H20 H20 H 0 1 N N N 16.482 -3.522 0.322 -9.129 -0.387 -0.933 H20 PKH 47 PKH H21 H21 H 0 1 N N N 3.793 -8.250 -6.567 5.832 1.936 1.533 H21 PKH 48 PKH H22 H22 H 0 1 N N N 10.305 -10.608 -6.163 1.797 -1.247 -0.680 H22 PKH 49 PKH S1 S1 S 0 1 N Y N 4.477 -8.910 -8.847 8.220 -0.278 -0.052 S1 PKH 50 PKH H8 H8 H 0 1 N N N 4.977 -9.001 -5.550 7.504 2.034 1.407 H8 PKH 51 PKH H23 H23 H 0 1 N N N 3.413 -8.290 -8.431 9.109 0.702 0.435 H23 PKH 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PKH C16 C15 SING N N 1 PKH C16 C17 SING N N 2 PKH C15 C20 SING N N 3 PKH C15 N14 SING N N 4 PKH C20 C19 SING N N 5 PKH C12 N14 DOUB N E 6 PKH C12 N13 SING N N 7 PKH N14 C18 SING N N 8 PKH C17 C18 SING N N 9 PKH C18 C19 SING N N 10 PKH C19 N21 SING N N 11 PKH N21 C22 SING N N 12 PKH C22 C24 SING N N 13 PKH C22 O23 DOUB N N 14 PKH C25 C24 DOUB Y N 15 PKH C25 C26 SING Y N 16 PKH C24 C29 SING Y N 17 PKH C26 C27 DOUB Y N 18 PKH C29 C28 DOUB Y N 19 PKH C29 CL30 SING N N 20 PKH C27 C28 SING Y N 21 PKH C27 C31 SING N N 22 PKH C38 C37 SING N N 23 PKH C38 C39 SING N N 24 PKH C31 N36 DOUB Y N 25 PKH C31 C32 SING Y N 26 PKH N36 C35 SING Y N 27 PKH C32 N33 DOUB Y N 28 PKH C35 C37 SING N N 29 PKH C35 C34 DOUB Y N 30 PKH C37 C39 SING N N 31 PKH N33 C34 SING Y N 32 PKH C15 H1 SING N N 33 PKH C17 H2 SING N N 34 PKH C17 H3 SING N N 35 PKH C20 H4 SING N N 36 PKH C20 H5 SING N N 37 PKH C26 H6 SING N N 38 PKH C28 H7 SING N N 39 PKH C16 H9 SING N N 40 PKH C16 H10 SING N N 41 PKH C18 H11 SING N N 42 PKH C19 H12 SING N N 43 PKH C25 H13 SING N N 44 PKH C32 H14 SING N N 45 PKH C34 H15 SING N N 46 PKH C37 H16 SING N N 47 PKH C38 H17 SING N N 48 PKH C38 H18 SING N N 49 PKH C39 H19 SING N N 50 PKH C39 H20 SING N N 51 PKH N13 H21 SING N N 52 PKH N21 H22 SING N N 53 PKH C12 S1 SING N N 54 PKH N13 H8 SING N N 55 PKH S1 H23 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PKH SMILES ACDLabs 12.01 "N/C(S)=[N+]1/C2CC(NC(=O)c3ccc(cc3Cl)c3cncc(n3)C3CC3)C1CC2" PKH InChI InChI 1.03 "InChI=1S/C21H22ClN5OS/c22-15-7-12(18-10-24-9-17(25-18)11-1-2-11)3-5-14(15)20(28)26-16-8-13-4-6-19(16)27(13)21(23)29/h3,5,7,9-11,13,16,19H,1-2,4,6,8H2,(H3,23,26,28,29)/p+1/t13-,16+,19+/m0/s1" PKH InChIKey InChI 1.03 KZSNYGBGGXEVJT-URKNILKWSA-O PKH SMILES_CANONICAL CACTVS 3.385 "N\C(S)=[N+]1\[C@H]2CC[C@@H]1[C@@H](C2)NC(=O)c3ccc(cc3Cl)c4cncc(n4)C5CC5" PKH SMILES CACTVS 3.385 "NC(S)=[N+]1[CH]2CC[CH]1[CH](C2)NC(=O)c3ccc(cc3Cl)c4cncc(n4)C5CC5" PKH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2cncc(n2)C3CC3)Cl)C(=O)N[C@@H]4C[C@@H]\5CC[C@H]4/[N+]5=C(\N)/S" PKH SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1c2cncc(n2)C3CC3)Cl)C(=O)NC4CC5CCC4[N+]5=C(N)S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PKH "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(4M)-2-chloro-4-(6-cyclopropylpyrazin-2-yl)benzene-1-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium" PKH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R},2~{R},4~{S},7~{E})-7-[azanyl(sulfanyl)methylidene]-7-azoniabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-(6-cyclopropylpyrazin-2-yl)benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PKH "Create component" 2022-05-26 RCSB PKH "Initial release" 2023-02-01 RCSB #