data_PL2
#
_chem_comp.id PL2
_chem_comp.name "(4-{[(4-{[AMINO(IMINO)METHYL]AMINO}BUTYL)AMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H24 N5 O5 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-11-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 361.334
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PL2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PL2 N1 N1 N 0 1 Y N N 113.331 72.434 49.345 5.337 -5.138 -2.948 N1 PL2 1
PL2 C2 C2 C 0 1 Y N N 114.543 72.860 48.953 5.272 -3.849 -3.348 C2 PL2 2
PL2 C2A C2A C 0 1 N N N 115.769 71.935 49.088 6.579 -3.197 -3.663 C2A PL2 3
PL2 C3 C3 C 0 1 Y N N 114.660 74.152 48.423 4.092 -3.134 -3.473 C3 PL2 4
PL2 O3 O3 O 0 1 N N N 115.894 74.553 48.018 4.096 -1.837 -3.880 O3 PL2 5
PL2 C4 C4 C 0 1 Y N N 113.543 75.001 48.289 2.907 -3.787 -3.167 C4 PL2 6
PL2 C4A C4A C 0 1 N N N 113.633 76.447 47.717 1.601 -3.057 -3.286 C4A PL2 7
PL2 C5 C5 C 0 1 Y N N 112.307 74.478 48.719 2.927 -5.111 -2.753 C5 PL2 8
PL2 C6 C6 C 0 1 Y N N 112.238 73.200 49.242 4.160 -5.738 -2.661 C6 PL2 9
PL2 P P P 0 1 N N N 109.177 76.447 47.446 -0.174 -7.369 -3.452 P PL2 10
PL2 N N N 0 1 N N N 114.759 76.617 46.771 1.235 -2.388 -2.044 N PL2 11
PL2 CA CA C 0 1 N N N 115.356 77.955 46.883 -0.039 -1.697 -2.179 CA PL2 12
PL2 CG CG C 0 1 N N N 114.959 80.446 46.666 -1.731 -0.182 -1.052 CG PL2 13
PL2 OP2 OP2 O 0 1 N N N 108.978 77.123 46.004 -0.641 -8.010 -4.727 OP2 PL2 14
PL2 OP3 OP3 O 0 1 N N N 109.075 77.655 48.532 -1.226 -6.352 -2.764 OP3 PL2 15
PL2 OP1 OP1 O 0 1 N N N 108.174 75.370 47.697 0.180 -8.401 -2.259 OP1 PL2 16
PL2 OP4 OP4 O 0 1 N N N 110.701 75.930 47.413 1.180 -6.495 -3.581 OP4 PL2 17
PL2 C5M C5M C 0 1 N N N 111.019 75.320 48.614 1.684 -5.857 -2.413 C5M PL2 18
PL2 CB CB C 0 1 N N N 114.306 79.062 46.651 -0.404 -0.936 -0.911 CB PL2 19
PL2 CD CD C 0 1 N N N 113.916 81.557 46.398 -2.114 0.568 0.220 CD PL2 20
PL2 NE NE N 0 1 N N N 114.636 82.843 46.535 -3.348 1.291 0.079 NE PL2 21
PL2 CZ CZ C 0 1 N N N 114.073 84.054 46.662 -3.984 2.057 1.040 CZ PL2 22
PL2 NH2 NH2 N 0 1 N N N 114.873 85.140 46.794 -5.111 2.669 0.789 NH2 PL2 23
PL2 NH1 NH1 N 0 1 N N N 112.744 84.194 46.653 -3.374 2.142 2.267 NH1 PL2 24
PL2 H2A1 1H2A H 0 0 N N N 116.174 71.715 48.089 6.414 -2.254 -4.197 H2A1 PL2 25
PL2 H2A2 2H2A H 0 0 N N N 116.539 72.434 49.695 7.147 -2.987 -2.748 H2A2 PL2 26
PL2 H2A3 3H2A H 0 0 N N N 115.468 70.996 49.576 7.205 -3.848 -4.286 H2A3 PL2 27
PL2 HO3 HO3 H 0 1 N N N 115.903 74.647 47.073 3.401 -1.336 -3.422 HO3 PL2 28
PL2 H4A1 1H4A H 0 0 N N N 113.775 77.144 48.556 1.653 -2.299 -4.074 H4A1 PL2 29
PL2 H4A2 2H4A H 0 0 N N N 112.701 76.648 47.168 0.789 -3.744 -3.547 H4A2 PL2 30
PL2 H6 H6 H 0 1 N N N 111.286 72.813 49.573 4.243 -6.773 -2.343 H6 PL2 31
PL2 HN HN H 0 1 N N N 114.419 76.492 45.839 1.960 -1.713 -1.801 HN PL2 32
PL2 HA1 1HA H 0 1 N N N 116.149 78.054 46.127 -0.805 -2.437 -2.432 HA1 PL2 33
PL2 HA2 2HA H 0 1 N N N 115.762 78.070 47.899 0.050 -1.002 -3.020 HA2 PL2 34
PL2 HG1 1HG H 0 1 N N N 115.731 80.485 45.883 -2.531 -0.884 -1.319 HG1 PL2 35
PL2 HG2 2HG H 0 1 N N N 115.402 80.614 47.659 -1.648 0.541 -1.871 HG2 PL2 36
PL2 HOP3 HOP3 H 0 0 N N N 109.055 77.292 49.410 -2.155 -6.642 -2.642 HOP3 PL2 37
PL2 HOP1 HOP1 H 0 0 N N N 107.961 74.938 46.878 -0.457 -9.115 -2.044 HOP1 PL2 38
PL2 H5M1 1H5M H 0 0 N N N 111.118 76.128 49.354 1.871 -6.624 -1.648 H5M1 PL2 39
PL2 H5M2 2H5M H 0 0 N N N 110.211 74.588 48.762 0.910 -5.183 -2.019 H5M2 PL2 40
PL2 HB1 1HB H 0 1 N N N 113.552 79.013 47.450 0.397 -0.222 -0.685 HB1 PL2 41
PL2 HB2 2HB H 0 1 N N N 113.839 78.904 45.668 -0.461 -1.639 -0.072 HB2 PL2 42
PL2 HD1 1HD H 0 1 N N N 113.092 81.496 47.124 -1.341 1.302 0.468 HD1 PL2 43
PL2 HD2 2HD H 0 1 N N N 113.471 81.454 45.397 -2.221 -0.115 1.068 HD2 PL2 44
PL2 HNE HNE H 0 1 N N N 115.635 82.806 46.533 -3.803 1.228 -0.832 HNE PL2 45
PL2 HNH2 HNH2 H 0 0 N N N 115.836 84.870 46.780 -5.382 2.468 -0.181 HNH2 PL2 46
PL2 HH11 1HH1 H 0 0 N N N 112.492 85.156 46.758 -2.499 1.673 2.471 HH11 PL2 47
PL2 HH12 2HH1 H 0 0 N N N 112.093 83.442 46.555 -3.785 2.687 3.017 HH12 PL2 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PL2 N1 C2 DOUB Y N 1
PL2 N1 C6 SING Y N 2
PL2 C2 C3 SING Y N 3
PL2 C2 C2A SING N N 4
PL2 C2A H2A1 SING N N 5
PL2 C2A H2A2 SING N N 6
PL2 C2A H2A3 SING N N 7
PL2 C3 O3 SING N N 8
PL2 C3 C4 DOUB Y N 9
PL2 O3 HO3 SING N N 10
PL2 C4 C4A SING N N 11
PL2 C4 C5 SING Y N 12
PL2 C4A N SING N N 13
PL2 C4A H4A1 SING N N 14
PL2 C4A H4A2 SING N N 15
PL2 C5 C5M SING N N 16
PL2 C5 C6 DOUB Y N 17
PL2 C6 H6 SING N N 18
PL2 P OP2 DOUB N N 19
PL2 P OP4 SING N N 20
PL2 P OP1 SING N N 21
PL2 P OP3 SING N N 22
PL2 N CA SING N N 23
PL2 N HN SING N N 24
PL2 CA CB SING N N 25
PL2 CA HA1 SING N N 26
PL2 CA HA2 SING N N 27
PL2 CG CD SING N N 28
PL2 CG CB SING N N 29
PL2 CG HG1 SING N N 30
PL2 CG HG2 SING N N 31
PL2 OP3 HOP3 SING N N 32
PL2 OP1 HOP1 SING N N 33
PL2 OP4 C5M SING N N 34
PL2 C5M H5M1 SING N N 35
PL2 C5M H5M2 SING N N 36
PL2 CB HB1 SING N N 37
PL2 CB HB2 SING N N 38
PL2 CD NE SING N N 39
PL2 CD HD1 SING N N 40
PL2 CD HD2 SING N N 41
PL2 NE CZ SING N N 42
PL2 NE HNE SING N N 43
PL2 CZ NH1 SING N N 44
PL2 CZ NH2 DOUB N Z 45
PL2 NH2 HNH2 SING N N 46
PL2 NH1 HH11 SING N N 47
PL2 NH1 HH12 SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PL2 SMILES ACDLabs 10.04 "O=P(O)(O)OCc1cnc(c(O)c1CNCCCCNC(=[N@H])N)C"
PL2 SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNCCCCNC(N)=N)c1O"
PL2 SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNCCCCNC(N)=N)c1O"
PL2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/N)\NCCCCNCc1c(cnc(c1O)C)COP(=O)(O)O"
PL2 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(N)NCCCCNCc1c(cnc(c1O)C)COP(=O)(O)O"
PL2 InChI InChI 1.03 "InChI=1S/C13H24N5O5P/c1-9-12(19)11(7-16-4-2-3-5-17-13(14)15)10(6-18-9)8-23-24(20,21)22/h6,16,19H,2-5,7-8H2,1H3,(H4,14,15,17)(H2,20,21,22)"
PL2 InChIKey InChI 1.03 SIKJBFNFPRPKQR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PL2 "SYSTEMATIC NAME" ACDLabs 10.04 "(4-{[(4-carbamimidamidobutyl)amino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate"
PL2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-[(4-carbamimidamidobutylamino)methyl]-5-hydroxy-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PL2 "Create component" 2006-11-14 EBI
PL2 "Modify descriptor" 2011-06-04 RCSB
#