data_PLA # _chem_comp.id PLA _chem_comp.name "2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-PYRIDOXYL-2-METHYLASPARTIC ACID-5-MONOPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces AMA _chem_comp.formula_weight 378.272 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PLA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AJS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PLA N1 N1 N 0 1 Y N N -30.898 -38.032 -6.643 3.176 0.555 2.733 N1 PLA 1 PLA C2 C2 C 0 1 Y N N -30.765 -39.289 -6.144 3.766 0.357 1.572 C2 PLA 2 PLA C2A C2A C 0 1 N N N -29.638 -40.118 -6.698 5.255 0.558 1.448 C2A PLA 3 PLA C3 C3 C 0 1 Y N N -31.653 -39.726 -5.146 3.031 -0.029 0.461 C3 PLA 4 PLA O3 O3 O 0 1 N N N -31.583 -40.937 -4.656 3.645 -0.232 -0.734 O3 PLA 5 PLA C4 C4 C 0 1 Y N N -32.682 -38.851 -4.722 1.659 -0.216 0.590 C4 PLA 6 PLA C4A C4A C 0 1 N N N -33.605 -39.351 -3.732 0.823 -0.642 -0.588 C4A PLA 7 PLA C5 C5 C 0 1 Y N N -32.760 -37.581 -5.259 1.079 0.002 1.829 C5 PLA 8 PLA C6 C6 C 0 1 Y N N -31.853 -37.158 -6.235 1.877 0.392 2.889 C6 PLA 9 PLA C5A C5A C 0 1 N N N -33.836 -36.577 -4.916 -0.404 -0.180 2.019 C5A PLA 10 PLA O4P O4P O 0 1 N N N -33.891 -36.024 -3.654 -0.750 0.105 3.376 O4P PLA 11 PLA P P P 0 1 N N N -34.951 -34.877 -3.250 -2.340 -0.109 3.507 P PLA 12 PLA O1P O1P O 0 1 N N N -35.931 -35.566 -2.300 -2.678 -1.508 3.162 O1P PLA 13 PLA O2P O2P O 0 1 N N N -35.569 -34.318 -4.547 -2.800 0.197 5.018 O2P PLA 14 PLA O3P O3P O 0 1 N N N -34.060 -33.791 -2.547 -3.101 0.890 2.500 O3P PLA 15 PLA N N N 0 1 N N N -33.887 -40.711 -3.591 0.344 0.547 -1.304 N PLA 16 PLA CA CA C 0 1 N N S -34.762 -41.360 -2.599 -0.458 0.064 -2.435 CA PLA 17 PLA CB1 CB1 C 0 1 N N N -36.237 -40.942 -2.650 -0.992 1.259 -3.229 CB1 PLA 18 PLA CB2 CB2 C 0 1 N N N -34.248 -41.071 -1.203 -1.632 -0.763 -1.910 CB2 PLA 19 PLA CG CG C 0 1 N N N -36.799 -40.818 -4.065 -1.816 0.764 -4.389 CG PLA 20 PLA OD1 OD1 O 0 1 N N N -36.792 -41.743 -4.910 -1.961 -0.422 -4.564 OD1 PLA 21 PLA OD2 OD2 O 0 1 N N N -37.277 -39.672 -4.349 -2.388 1.641 -5.229 OD2 PLA 22 PLA C C C 0 1 N N N -34.691 -42.892 -2.807 0.399 -0.790 -3.332 C PLA 23 PLA O O O 0 1 N N N -35.353 -43.679 -2.125 -0.099 -1.691 -3.965 O PLA 24 PLA OXT OXT O 0 1 N N N -34.109 -43.320 -3.834 1.716 -0.552 -3.427 OXT PLA 25 PLA H2A1 1H2A H 0 0 N N N -29.528 -41.149 -6.288 5.767 -0.378 1.665 H2A1 PLA 26 PLA H2A2 2H2A H 0 0 N N N -29.717 -40.162 -7.809 5.495 0.878 0.434 H2A2 PLA 27 PLA H2A3 3H2A H 0 0 N N N -28.675 -39.566 -6.584 5.578 1.322 2.155 H2A3 PLA 28 PLA HO3 HO3 H 0 1 N N N -32.183 -41.232 -3.981 3.629 0.612 -1.204 HO3 PLA 29 PLA H4A1 1H4A H 0 0 N N N -33.272 -38.970 -2.738 1.427 -1.252 -1.260 H4A1 PLA 30 PLA H4A2 2H4A H 0 0 N N N -34.574 -38.818 -3.875 -0.029 -1.223 -0.238 H4A2 PLA 31 PLA H6 H6 H 0 1 N N N -31.890 -36.148 -6.677 1.430 0.564 3.857 H6 PLA 32 PLA H5A1 1H5A H 0 0 N N N -33.794 -35.748 -5.661 -0.942 0.497 1.357 H5A1 PLA 33 PLA H5A2 2H5A H 0 0 N N N -34.827 -37.033 -5.143 -0.676 -1.210 1.784 H5A2 PLA 34 PLA HOP2 2HOP H 0 0 N N N -36.193 -33.642 -4.309 -3.757 0.057 5.053 HOP2 PLA 35 PLA HOP3 3HOP H 0 0 N N N -34.684 -33.115 -2.309 -2.854 1.788 2.759 HOP3 PLA 36 PLA HN HN H 0 1 N N N -32.981 -41.173 -3.504 -0.289 1.024 -0.681 HN PLA 37 PLA HB11 1HB1 H 0 0 N N N -36.861 -41.635 -2.040 -1.612 1.878 -2.580 HB11 PLA 38 PLA HB12 2HB1 H 0 0 N N N -36.395 -39.996 -2.081 -0.155 1.850 -3.603 HB12 PLA 39 PLA HB21 1HB2 H 0 0 N N N -34.910 -41.562 -0.452 -2.253 -0.145 -1.262 HB21 PLA 40 PLA HB22 2HB2 H 0 0 N N N -33.179 -41.365 -1.078 -2.228 -1.121 -2.750 HB22 PLA 41 PLA HB23 3HB2 H 0 0 N N N -34.135 -39.977 -1.013 -1.253 -1.614 -1.345 HB23 PLA 42 PLA HOD HOD H 0 1 N N N -37.626 -39.594 -5.229 -2.916 1.324 -5.974 HOD PLA 43 PLA HXT HXT H 0 1 N N N -34.065 -44.260 -3.961 2.266 -1.101 -4.002 HXT PLA 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PLA N1 C2 DOUB Y N 1 PLA N1 C6 SING Y N 2 PLA C2 C2A SING N N 3 PLA C2 C3 SING Y N 4 PLA C2A H2A1 SING N N 5 PLA C2A H2A2 SING N N 6 PLA C2A H2A3 SING N N 7 PLA C3 O3 SING N N 8 PLA C3 C4 DOUB Y N 9 PLA O3 HO3 SING N N 10 PLA C4 C4A SING N N 11 PLA C4 C5 SING Y N 12 PLA C4A N SING N N 13 PLA C4A H4A1 SING N N 14 PLA C4A H4A2 SING N N 15 PLA C5 C6 DOUB Y N 16 PLA C5 C5A SING N N 17 PLA C6 H6 SING N N 18 PLA C5A O4P SING N N 19 PLA C5A H5A1 SING N N 20 PLA C5A H5A2 SING N N 21 PLA O4P P SING N N 22 PLA P O1P DOUB N N 23 PLA P O2P SING N N 24 PLA P O3P SING N N 25 PLA O2P HOP2 SING N N 26 PLA O3P HOP3 SING N N 27 PLA N CA SING N N 28 PLA N HN SING N N 29 PLA CA CB1 SING N N 30 PLA CA CB2 SING N N 31 PLA CA C SING N N 32 PLA CB1 CG SING N N 33 PLA CB1 HB11 SING N N 34 PLA CB1 HB12 SING N N 35 PLA CB2 HB21 SING N N 36 PLA CB2 HB22 SING N N 37 PLA CB2 HB23 SING N N 38 PLA CG OD1 DOUB N N 39 PLA CG OD2 SING N N 40 PLA OD2 HOD SING N N 41 PLA C O DOUB N N 42 PLA C OXT SING N N 43 PLA OXT HXT SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PLA SMILES ACDLabs 10.04 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)(C)CC(=O)O" PLA SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@](C)(CC(O)=O)C(O)=O)c1O" PLA SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C](C)(CC(O)=O)C(O)=O)c1O" PLA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@](C)(CC(=O)O)C(=O)O)O" PLA SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)(CC(=O)O)C(=O)O)O" PLA InChI InChI 1.03 "InChI=1S/C13H19N2O9P/c1-7-11(18)9(8(4-14-7)6-24-25(21,22)23)5-15-13(2,12(19)20)3-10(16)17/h4,15,18H,3,5-6H2,1-2H3,(H,16,17)(H,19,20)(H2,21,22,23)/t13-/m0/s1" PLA InChIKey InChI 1.03 ZFKRUCNEKPIDBK-ZDUSSCGKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PLA "SYSTEMATIC NAME" ACDLabs 10.04 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-2-methyl-L-aspartic acid" PLA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-2-methyl-butanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PLA "Create component" 1999-07-08 RCSB PLA "Modify descriptor" 2011-06-04 RCSB PLA "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PLA _pdbx_chem_comp_synonyms.name "N-PYRIDOXYL-2-METHYLASPARTIC ACID-5-MONOPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##