data_PLR # _chem_comp.id PLR _chem_comp.name "(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H12 N O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4'-DEOXYPYRIDOXINE PHOSPHATE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-03 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 233.158 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PLR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PMO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PLR N1 N1 N 0 1 Y N N N N N 56.024 72.818 6.275 1.749 -0.022 2.259 N1 PLR 1 PLR C2 C2 C 0 1 Y N N N N N 57.277 72.702 6.767 0.906 -0.010 3.272 C2 PLR 2 PLR C2A C2A C 0 1 N N N N N N 57.664 73.513 7.969 1.436 -0.026 4.683 C2A PLR 3 PLR C3 C3 C 0 1 Y N N N N N 58.159 71.819 6.108 -0.463 0.012 3.054 C3 PLR 4 PLR O3 O3 O 0 1 N N N N N N 59.419 71.638 6.544 -1.328 0.023 4.102 O3 PLR 5 PLR C4 C4 C 0 1 Y N N N N N 57.719 71.099 4.969 -0.938 0.032 1.746 C4 PLR 6 PLR C4A C4A C 0 1 N N N N N N 58.732 70.179 4.289 -2.418 0.062 1.463 C4A PLR 7 PLR C5 C5 C 0 1 Y N N N N N 56.389 71.274 4.517 -0.017 0.018 0.711 C5 PLR 8 PLR C6 C6 C 0 1 Y N N N N N 55.572 72.142 5.194 1.332 -0.009 1.008 C6 PLR 9 PLR C5A C5A C 0 1 N N N N N N 55.822 70.533 3.308 -0.482 0.033 -0.722 C5A PLR 10 PLR O4P O4P O 0 1 N N N N N N 55.563 69.174 3.703 0.651 0.014 -1.591 O4P PLR 11 PLR P P P 0 1 N N N N N N 55.240 68.094 2.559 0.084 0.032 -3.097 P PLR 12 PLR O1P O1P O 0 1 N N N N N N 55.013 66.795 3.275 -0.718 1.257 -3.308 O1P PLR 13 PLR O2P O2P O 0 1 N N N N N N 56.521 67.978 1.683 1.315 0.011 -4.135 O2P PLR 14 PLR O3P O3P O 0 1 N N N N N N 54.126 68.664 1.731 -0.840 -1.263 -3.337 O3P PLR 15 PLR H2A1 1H2A H 0 0 N N N N N N 56.936 73.310 8.789 1.584 0.996 5.028 H2A1 PLR 16 PLR H2A2 2H2A H 0 0 N N N N N N 58.698 73.417 8.375 0.720 -0.529 5.334 H2A2 PLR 17 PLR H2A3 3H2A H 0 0 N N N N N N 57.459 74.589 7.758 2.386 -0.559 4.708 H2A3 PLR 18 PLR HO3 HO3 H 0 1 N N N N N N 60.013 71.044 6.100 -1.527 -0.899 4.310 HO3 PLR 19 PLR H4A1 1H4A H 0 0 N N N N N N 59.148 69.467 5.040 -2.795 -0.957 1.390 H4A1 PLR 20 PLR H4A2 2H4A H 0 0 N N N N N N 58.386 69.613 3.393 -2.932 0.583 2.271 H4A2 PLR 21 PLR H4A3 3H4A H 0 0 N N N N N N 59.646 70.763 4.028 -2.597 0.584 0.523 H4A3 PLR 22 PLR H6 H6 H 0 1 N N N N N N 54.532 72.299 4.863 2.054 -0.019 0.205 H6 PLR 23 PLR H5A1 1H5A H 0 0 N N N N N N 56.480 70.604 2.411 -1.101 -0.843 -0.912 H5A1 PLR 24 PLR H5A2 2H5A H 0 0 N N N N N N 54.926 71.035 2.875 -1.065 0.936 -0.905 H5A2 PLR 25 PLR H2P H2P H 0 1 N N N N N N 56.330 67.339 1.006 0.933 0.022 -5.023 H2P PLR 26 PLR H3P H3P H 0 1 N N N N N N 53.935 68.025 1.054 -0.280 -2.038 -3.190 H3P PLR 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PLR N1 C2 DOUB Y N 1 PLR N1 C6 SING Y N 2 PLR C2 C2A SING N N 3 PLR C2 C3 SING Y N 4 PLR C2A H2A1 SING N N 5 PLR C2A H2A2 SING N N 6 PLR C2A H2A3 SING N N 7 PLR C3 O3 SING N N 8 PLR C3 C4 DOUB Y N 9 PLR O3 HO3 SING N N 10 PLR C4 C4A SING N N 11 PLR C4 C5 SING Y N 12 PLR C4A H4A1 SING N N 13 PLR C4A H4A2 SING N N 14 PLR C4A H4A3 SING N N 15 PLR C5 C6 DOUB Y N 16 PLR C5 C5A SING N N 17 PLR C6 H6 SING N N 18 PLR C5A O4P SING N N 19 PLR C5A H5A1 SING N N 20 PLR C5A H5A2 SING N N 21 PLR O4P P SING N N 22 PLR P O1P DOUB N N 23 PLR P O2P SING N N 24 PLR P O3P SING N N 25 PLR O2P H2P SING N N 26 PLR O3P H3P SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PLR SMILES ACDLabs 10.04 "O=P(O)(O)OCc1cnc(c(O)c1C)C" PLR SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C)c1O" PLR SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C)c1O" PLR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(cnc(c1O)C)COP(=O)(O)O" PLR SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(cnc(c1O)C)COP(=O)(O)O" PLR InChI InChI 1.03 "InChI=1S/C8H12NO5P/c1-5-7(4-14-15(11,12)13)3-9-6(2)8(5)10/h3,10H,4H2,1-2H3,(H2,11,12,13)" PLR InChIKey InChI 1.03 RBCOYOYDYNXAFA-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PLR "SYSTEMATIC NAME" ACDLabs 10.04 "(5-hydroxy-4,6-dimethylpyridin-3-yl)methyl dihydrogen phosphate" PLR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-4,6-dimethyl-pyridin-3-yl)methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PLR "Create component" 2003-07-03 RCSB PLR "Modify descriptor" 2011-06-04 RCSB PLR "Modify synonyms" 2021-03-01 PDBE PLR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PLR _pdbx_chem_comp_synonyms.name ;4'-DEOXYPYRIDOXINE PHOSPHATE ; _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PLR _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #