data_PM4 # _chem_comp.id PM4 _chem_comp.name "S-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) HEXANETHIOATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H33 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-12-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PM4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FAC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PM4 O23 O23 O 0 1 N N N N N N 10.835 28.404 25.417 7.169 4.039 -0.093 O23 PM4 1 PM4 P24 P24 P 0 1 N N S N N N 10.332 27.800 24.092 6.485 2.788 0.653 P24 PM4 2 PM4 O26 O26 O 0 1 N N N N N N 9.210 26.805 24.364 5.173 3.198 1.203 O26 PM4 3 PM4 O27 O27 O 0 1 N N N N N N 9.779 28.961 23.242 6.273 1.586 -0.397 O27 PM4 4 PM4 C28 C28 C 0 1 N N N N N N 9.156 28.760 21.994 5.984 0.245 0.002 C28 PM4 5 PM4 C29 C29 C 0 1 N N N N N N 8.556 30.094 21.514 5.845 -0.638 -1.240 C29 PM4 6 PM4 C30 C30 C 0 1 N N N N N N 7.600 29.804 20.339 4.707 -0.110 -2.117 C30 PM4 7 PM4 C31 C31 C 0 1 N N N N N N 7.752 30.686 22.697 7.153 -0.613 -2.032 C31 PM4 8 PM4 C32 C32 C 0 1 N N R N N N 9.660 31.083 21.071 5.534 -2.074 -0.813 C32 PM4 9 PM4 O33 O33 O 0 1 N N N N N N 10.391 30.487 19.994 6.654 -2.613 -0.107 O33 PM4 10 PM4 C34 C34 C 0 1 N N N N N N 8.960 32.365 20.581 4.324 -2.080 0.085 C34 PM4 11 PM4 O35 O35 O 0 1 N N N N N N 8.386 33.111 21.377 4.440 -2.364 1.258 O35 PM4 12 PM4 N36 N36 N 0 1 N N N N N N 9.004 32.625 19.277 3.112 -1.770 -0.416 N36 PM4 13 PM4 C37 C37 C 0 1 N N N N N N 8.372 33.802 18.670 1.952 -1.682 0.475 C37 PM4 14 PM4 C38 C38 C 0 1 N N N N N N 8.961 34.231 17.330 0.709 -1.318 -0.341 C38 PM4 15 PM4 C39 C39 C 0 1 N N N N N N 10.407 34.658 17.393 -0.484 -1.227 0.575 C39 PM4 16 PM4 O40 O40 O 0 1 N N N N N N 11.330 33.844 17.308 -0.353 -1.433 1.763 O40 PM4 17 PM4 N41 N41 N 0 1 N N N N N N 10.573 35.971 17.543 -1.696 -0.917 0.074 N41 PM4 18 PM4 C42 C42 C 0 1 N N N N N N 11.834 36.695 17.623 -2.856 -0.829 0.965 C42 PM4 19 PM4 C43 C43 C 0 1 N N N N N N 12.176 37.149 16.209 -4.099 -0.465 0.149 C43 PM4 20 PM4 S1 S1 S 0 1 N N N N N N 13.654 38.141 15.885 -5.532 -0.356 1.250 S1 PM4 21 PM4 C1 C1 C 0 1 N N N N N N 13.401 39.681 16.722 -6.747 0.051 0.115 C1 PM4 22 PM4 O1 O1 O 0 1 N N N N N N 12.375 39.875 17.363 -6.465 0.175 -1.058 O1 PM4 23 PM4 C2 C2 C 0 1 N N N N N N 14.510 40.733 16.601 -8.168 0.255 0.574 C2 PM4 24 PM4 C3 C3 C 0 1 N N N N N N 14.048 42.018 15.959 -9.047 0.607 -0.628 C3 PM4 25 PM4 C4 C4 C 0 1 N N N N N N 15.211 42.995 15.768 -10.489 0.815 -0.163 C4 PM4 26 PM4 C5 C5 C 0 1 N N N N N N 15.905 43.365 17.024 -11.368 1.167 -1.365 C5 PM4 27 PM4 C6 C6 C 0 1 N N N N N N 17.029 44.362 16.703 -12.810 1.374 -0.899 C6 PM4 28 PM4 H23 H23 H 0 1 N N N N N N 10.939 27.713 26.061 7.327 4.801 0.481 H23 PM4 29 PM4 H24 H24 H 0 1 N N N N N N 11.387 27.124 23.423 7.325 2.349 1.711 H24 PM4 30 PM4 H281 1H28 H 0 0 N N N N N N 8.359 28.008 22.093 6.794 -0.131 0.626 H281 PM4 31 PM4 H282 2H28 H 0 0 N N N N N N 9.897 28.404 21.264 5.051 0.228 0.566 H282 PM4 32 PM4 H301 1H30 H 0 0 N N N N N N 7.882 28.853 19.864 4.979 0.868 -2.514 H301 PM4 33 PM4 H302 2H30 H 0 0 N N N N N N 7.668 30.617 19.601 4.533 -0.801 -2.941 H302 PM4 34 PM4 H303 3H30 H 0 0 N N N N N N 6.568 29.735 20.714 3.800 -0.020 -1.520 H303 PM4 35 PM4 H311 1H31 H 0 0 N N N N N N 6.940 29.996 22.970 7.951 -1.046 -1.429 H311 PM4 36 PM4 H312 2H31 H 0 0 N N N N N N 7.326 31.656 22.401 7.035 -1.193 -2.948 H312 PM4 37 PM4 H313 3H31 H 0 0 N N N N N N 8.419 30.826 23.560 7.406 0.417 -2.285 H313 PM4 38 PM4 H32 H32 H 0 1 N N N N N N 10.350 31.318 21.894 5.335 -2.681 -1.696 H32 PM4 39 PM4 H33 H33 H 0 1 N N N N N N 9.812 30.355 19.253 6.888 -2.122 0.692 H33 PM4 40 PM4 H36 H36 H 0 1 N N N N N N 9.492 31.987 18.681 3.007 -1.606 -1.366 H36 PM4 41 PM4 H371 1H37 H 0 0 N N N N N N 8.540 34.638 19.365 1.796 -2.643 0.965 H371 PM4 42 PM4 H372 2H37 H 0 0 N N N N N N 7.310 33.564 18.507 2.129 -0.914 1.228 H372 PM4 43 PM4 H381 1H38 H 0 0 N N N N N N 8.386 35.108 16.997 0.865 -0.357 -0.831 H381 PM4 44 PM4 H382 2H38 H 0 0 N N N N N N 8.891 33.376 16.642 0.531 -2.086 -1.094 H382 PM4 45 PM4 H41 H41 H 0 1 N N N N N N 9.740 36.520 17.608 -1.801 -0.753 -0.876 H41 PM4 46 PM4 H421 1H42 H 0 0 N N N N N N 12.629 36.054 18.032 -3.012 -1.790 1.455 H421 PM4 47 PM4 H422 2H42 H 0 0 N N N N N N 11.734 37.564 18.290 -2.678 -0.061 1.718 H422 PM4 48 PM4 H431 1H43 H 0 0 N N N N N N 11.353 37.836 15.960 -3.943 0.495 -0.341 H431 PM4 49 PM4 H432 2H43 H 0 0 N N N N N N 12.297 36.228 15.619 -4.276 -1.233 -0.604 H432 PM4 50 PM4 H21 1H2 H 0 1 N N N N N N 15.295 40.309 15.957 -8.536 -0.661 1.036 H21 PM4 51 PM4 H22 2H2 H 0 1 N N N N N N 14.874 40.966 17.612 -8.202 1.068 1.299 H22 PM4 52 PM4 H31 1H3 H 0 1 N N N N N N 13.304 42.488 16.618 -8.679 1.523 -1.091 H31 PM4 53 PM4 H32A 2H3 H 0 0 N N N N N N 13.612 41.787 14.976 -9.012 -0.206 -1.354 H32A PM4 54 PM4 H41A 1H4 H 0 0 N N N N N N 14.785 43.921 15.354 -10.857 -0.101 0.300 H41A PM4 55 PM4 H42 2H4 H 0 1 N N N N N N 15.946 42.520 15.102 -10.523 1.627 0.563 H42 PM4 56 PM4 H51 1H5 H 0 1 N N N N N N 16.331 42.465 17.491 -11.000 2.083 -1.828 H51 PM4 57 PM4 H52 2H5 H 0 1 N N N N N N 15.189 43.828 17.719 -11.333 0.354 -2.091 H52 PM4 58 PM4 H61 1H6 H 0 1 N N N N N N 18.000 43.916 16.965 -13.436 1.625 -1.756 H61 PM4 59 PM4 H62 2H6 H 0 1 N N N N N N 16.879 45.283 17.285 -13.178 0.458 -0.437 H62 PM4 60 PM4 H63 3H6 H 0 1 N N N N N N 17.013 44.600 15.629 -12.844 2.187 -0.174 H63 PM4 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PM4 O23 P24 SING N N 1 PM4 O23 H23 SING N N 2 PM4 P24 O26 DOUB N N 3 PM4 P24 O27 SING N N 4 PM4 P24 H24 SING N N 5 PM4 O27 C28 SING N N 6 PM4 C28 C29 SING N N 7 PM4 C28 H281 SING N N 8 PM4 C28 H282 SING N N 9 PM4 C29 C30 SING N N 10 PM4 C29 C31 SING N N 11 PM4 C29 C32 SING N N 12 PM4 C30 H301 SING N N 13 PM4 C30 H302 SING N N 14 PM4 C30 H303 SING N N 15 PM4 C31 H311 SING N N 16 PM4 C31 H312 SING N N 17 PM4 C31 H313 SING N N 18 PM4 C32 O33 SING N N 19 PM4 C32 C34 SING N N 20 PM4 C32 H32 SING N N 21 PM4 O33 H33 SING N N 22 PM4 C34 O35 DOUB N N 23 PM4 C34 N36 SING N N 24 PM4 N36 C37 SING N N 25 PM4 N36 H36 SING N N 26 PM4 C37 C38 SING N N 27 PM4 C37 H371 SING N N 28 PM4 C37 H372 SING N N 29 PM4 C38 C39 SING N N 30 PM4 C38 H381 SING N N 31 PM4 C38 H382 SING N N 32 PM4 C39 O40 DOUB N N 33 PM4 C39 N41 SING N N 34 PM4 N41 C42 SING N N 35 PM4 N41 H41 SING N N 36 PM4 C42 C43 SING N N 37 PM4 C42 H421 SING N N 38 PM4 C42 H422 SING N N 39 PM4 C43 S1 SING N N 40 PM4 C43 H431 SING N N 41 PM4 C43 H432 SING N N 42 PM4 S1 C1 SING N N 43 PM4 C1 O1 DOUB N N 44 PM4 C1 C2 SING N N 45 PM4 C2 C3 SING N N 46 PM4 C2 H21 SING N N 47 PM4 C2 H22 SING N N 48 PM4 C3 C4 SING N N 49 PM4 C3 H31 SING N N 50 PM4 C3 H32A SING N N 51 PM4 C4 C5 SING N N 52 PM4 C4 H41A SING N N 53 PM4 C4 H42 SING N N 54 PM4 C5 C6 SING N N 55 PM4 C5 H51 SING N N 56 PM4 C5 H52 SING N N 57 PM4 C6 H61 SING N N 58 PM4 C6 H62 SING N N 59 PM4 C6 H63 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PM4 SMILES ACDLabs 10.04 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)O)CCCCC" PM4 InChI InChI 1.03 "InChI=1S/C17H33N2O7PS/c1-4-5-6-7-14(21)28-11-10-18-13(20)8-9-19-16(23)15(22)17(2,3)12-26-27(24)25/h15,22,27H,4-12H2,1-3H3,(H,18,20)(H,19,23)(H,24,25)/t15-/m0/s1" PM4 InChIKey InChI 1.03 RXYQLYCKZTXHTF-HNNXBMFYSA-N PM4 SMILES_CANONICAL CACTVS 3.385 "CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[PH](O)=O" PM4 SMILES CACTVS 3.385 "CCCCCC(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[PH](O)=O" PM4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CCCCCC(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@H](=O)O)O" PM4 SMILES "OpenEye OEToolkits" 1.7.5 "CCCCCC(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PM4 "SYSTEMATIC NAME" ACDLabs 10.04 "S-[2-({N-[(2R)-2-hydroxy-4-{[(R)-hydroxy(oxido)phosphanyl]oxy}-3,3-dimethylbutanoyl]-beta-alanyl}amino)ethyl] hexanethioate" PM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(3R)-4-[[3-(2-hexanoylsulfanylethylamino)-3-oxo-propyl]amino]-3-hydroxy-2,2-dimethyl-4-oxo-butoxy]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PM4 "Create component" 2005-12-19 RCSB PM4 "Modify descriptor" 2011-06-04 RCSB PM4 "Modify descriptor" 2012-01-05 RCSB PM4 "Modify coordinates" 2012-01-05 RCSB PM4 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PM4 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P24 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #