data_PMG # _chem_comp.id PMG _chem_comp.name "N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-2-METHYL-L-GLUTAMIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H21 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-PYRIDOXYL-2-METHYL-L-GLUTAMIC ACID-5'-MONOPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.298 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PMG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1X29 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PMG N1 N1 N 0 1 Y N N 31.822 77.003 1.028 3.373 2.753 0.923 N1 PMG 1 PMG C2 C2 C 0 1 Y N N 32.059 75.569 0.953 2.343 3.532 0.657 C2 PMG 2 PMG C2A C2A C 0 1 N N N 31.592 74.897 2.242 2.422 5.004 0.968 C2A PMG 3 PMG C3 C3 C 0 1 Y N N 32.685 75.071 -0.320 1.186 3.009 0.098 C3 PMG 4 PMG O3 O3 O 0 1 N N N 32.862 73.746 -0.290 0.127 3.816 -0.174 O3 PMG 5 PMG C4 C4 C 0 1 Y N N 33.045 75.967 -1.443 1.129 1.649 -0.189 C4 PMG 6 PMG C4A C4A C 0 1 N N N 33.687 75.452 -2.769 -0.106 1.040 -0.801 C4A PMG 7 PMG C5 C5 C 0 1 Y N N 32.723 77.416 -1.174 2.234 0.867 0.107 C5 PMG 8 PMG C6 C6 C 0 1 Y N N 32.128 77.930 0.026 3.350 1.459 0.669 C6 PMG 9 PMG C5A C5A C 0 1 N N N 32.994 78.532 -2.167 2.219 -0.613 -0.179 C5A PMG 10 PMG OP4 OP4 O 0 1 N N N 32.637 78.293 -3.467 3.467 -1.187 0.215 OP4 PMG 11 PMG P P P 0 1 N N N 32.812 79.290 -4.700 3.381 -2.760 -0.118 P PMG 12 PMG OP1 OP1 O 0 1 N N N 31.534 79.597 -5.309 4.805 -3.449 0.180 OP1 PMG 13 PMG OP2 OP2 O 0 1 N N N 33.802 78.545 -5.537 2.251 -3.442 0.804 OP2 PMG 14 PMG OP3 OP3 O 0 1 N N N 33.439 80.597 -4.177 3.032 -2.944 -1.544 OP3 PMG 15 PMG N N N 0 1 N N N 34.493 74.099 -2.538 -1.016 0.602 0.266 N PMG 16 PMG CA CA C 0 1 N N S 35.226 73.271 -3.511 -2.193 0.022 -0.396 CA PMG 17 PMG CB2 CB2 C 0 1 N N N 34.197 72.346 -4.207 -1.759 -1.163 -1.261 CB2 PMG 18 PMG CB1 CB1 C 0 1 N N N 35.923 74.216 -4.560 -3.188 -0.457 0.663 CB1 PMG 19 PMG CG CG C 0 1 N N N 37.395 74.564 -4.446 -4.413 -1.062 -0.026 CG PMG 20 PMG CD CD C 0 1 N N N 37.650 75.460 -3.277 -5.394 -1.534 1.017 CD PMG 21 PMG OE1 OE1 O 0 1 N N N 37.260 76.648 -3.360 -6.550 -2.102 0.642 OE1 PMG 22 PMG OE2 OE2 O 0 1 N N N 38.238 74.955 -2.281 -5.138 -1.401 2.191 OE2 PMG 23 PMG C C C 0 1 N N N 36.214 72.350 -2.703 -2.847 1.066 -1.264 C PMG 24 PMG O O O 0 1 N N N 37.074 71.695 -3.319 -2.857 2.351 -0.876 O PMG 25 PMG OXT OXT O 0 1 N N N 36.074 72.319 -1.450 -3.362 0.746 -2.309 OXT PMG 26 PMG H2A1 1H2A H 0 0 N N N 31.773 73.798 2.184 2.819 5.537 0.104 H2A1 PMG 27 PMG H2A2 2H2A H 0 0 N N N 32.061 75.352 3.145 1.426 5.380 1.201 H2A2 PMG 28 PMG H2A3 3H2A H 0 0 N N N 30.527 75.133 2.475 3.079 5.160 1.824 H2A3 PMG 29 PMG HO3 HO3 H 0 1 N N N 33.257 73.431 -1.094 -0.433 3.818 0.615 HO3 PMG 30 PMG H4A1 1H4A H 0 0 N N N 32.925 75.340 -3.575 -0.606 1.782 -1.424 H4A1 PMG 31 PMG H4A2 2H4A H 0 0 N N N 34.326 76.232 -3.243 0.176 0.183 -1.412 H4A2 PMG 32 PMG H6 H6 H 0 1 N N N 31.913 79.001 0.173 4.214 0.855 0.902 H6 PMG 33 PMG H5A1 1H5A H 0 0 N N N 32.513 79.473 -1.813 1.410 -1.083 0.381 H5A1 PMG 34 PMG H5A2 2H5A H 0 0 N N N 34.069 78.822 -2.120 2.065 -0.775 -1.246 H5A2 PMG 35 PMG HP2 HP2 H 0 1 N N N 33.906 79.138 -6.271 2.516 -3.299 1.723 HP2 PMG 36 PMG HP3 HP3 H 0 1 N N N 33.543 81.190 -4.911 ? ? ? HP3 PMG 37 PMG HN HN H 0 1 N N N 33.831 73.465 -2.089 -0.554 -0.153 0.750 HN PMG 38 PMG HB21 1HB2 H 0 0 N N N 34.751 71.719 -4.943 -1.286 -1.917 -0.633 HB21 PMG 39 PMG HB22 2HB2 H 0 0 N N N 33.599 71.741 -3.485 -2.632 -1.593 -1.752 HB22 PMG 40 PMG HB23 3HB2 H 0 0 N N N 33.349 72.906 -4.665 -1.050 -0.821 -2.015 HB23 PMG 41 PMG HB11 1HB1 H 0 0 N N N 35.745 73.793 -5.576 -2.715 -1.212 1.291 HB11 PMG 42 PMG HB12 2HB1 H 0 0 N N N 35.345 75.168 -4.603 -3.497 0.387 1.280 HB12 PMG 43 PMG HG1 1HG H 0 1 N N N 38.030 73.648 -4.407 -4.887 -0.307 -0.653 HG1 PMG 44 PMG HG2 2HG H 0 1 N N N 37.786 75.004 -5.392 -4.104 -1.906 -0.642 HG2 PMG 45 PMG HE1 HE1 H 0 1 N N N 37.422 77.217 -2.617 -7.179 -2.406 1.311 HE1 PMG 46 PMG HXT HXT H 0 1 N N N 36.670 71.763 -0.962 ? ? ? HXT PMG 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PMG N1 C2 SING Y N 1 PMG N1 C6 DOUB Y N 2 PMG C2 C2A SING N N 3 PMG C2 C3 DOUB Y N 4 PMG C2A H2A1 SING N N 5 PMG C2A H2A2 SING N N 6 PMG C2A H2A3 SING N N 7 PMG C3 O3 SING N N 8 PMG C3 C4 SING Y N 9 PMG O3 HO3 SING N N 10 PMG C4 C4A SING N N 11 PMG C4 C5 DOUB Y N 12 PMG C4A N SING N N 13 PMG C4A H4A1 SING N N 14 PMG C4A H4A2 SING N N 15 PMG C5 C6 SING Y N 16 PMG C5 C5A SING N N 17 PMG C6 H6 SING N N 18 PMG C5A OP4 SING N N 19 PMG C5A H5A1 SING N N 20 PMG C5A H5A2 SING N N 21 PMG OP4 P SING N N 22 PMG P OP1 DOUB N N 23 PMG P OP2 SING N N 24 PMG P OP3 SING N N 25 PMG OP2 HP2 SING N N 26 PMG OP3 HP3 SING N N 27 PMG N CA SING N N 28 PMG N HN SING N N 29 PMG CA CB2 SING N N 30 PMG CA CB1 SING N N 31 PMG CA C SING N N 32 PMG CB2 HB21 SING N N 33 PMG CB2 HB22 SING N N 34 PMG CB2 HB23 SING N N 35 PMG CB1 CG SING N N 36 PMG CB1 HB11 SING N N 37 PMG CB1 HB12 SING N N 38 PMG CG CD SING N N 39 PMG CG HG1 SING N N 40 PMG CG HG2 SING N N 41 PMG CD OE1 SING N N 42 PMG CD OE2 DOUB N N 43 PMG OE1 HE1 SING N N 44 PMG C O DOUB N N 45 PMG C OXT SING N N 46 PMG OXT HXT SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PMG SMILES ACDLabs 10.04 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)(C)CCC(=O)O" PMG SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C@@](C)(CCC(O)=O)C(O)=O)c1O" PMG SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN[C](C)(CCC(O)=O)C(O)=O)c1O" PMG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@](C)(CCC(=O)O)C(=O)O)O" PMG SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)(CCC(=O)O)C(=O)O)O" PMG InChI InChI 1.03 "InChI=1S/C14H21N2O9P/c1-8-12(19)10(9(5-15-8)7-25-26(22,23)24)6-16-14(2,13(20)21)4-3-11(17)18/h5,16,19H,3-4,6-7H2,1-2H3,(H,17,18)(H,20,21)(H2,22,23,24)/t14-/m0/s1" PMG InChIKey InChI 1.03 CNIVMJHNGQZEAY-AWEZNQCLSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PMG "SYSTEMATIC NAME" ACDLabs 10.04 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-2-methyl-L-glutamic acid" PMG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-2-methyl-pentanedioic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PMG "Create component" 2005-04-25 RCSB PMG "Modify descriptor" 2011-06-04 RCSB PMG "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PMG _pdbx_chem_comp_synonyms.name "N-PYRIDOXYL-2-METHYL-L-GLUTAMIC ACID-5'-MONOPHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##