data_PMK # _chem_comp.id PMK _chem_comp.name "(4R,8S,16S,20R)-4,8,12,16,20-pentamethylheptacosyl dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H67 O4 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-25 _chem_comp.pdbx_modified_date 2014-10-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 546.846 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PMK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ONO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PMK O1 O1 O 0 1 N N N 8.529 -31.126 -38.893 16.247 0.093 -1.083 O1 PMK 1 PMK CAA CAA C 0 1 N N N 5.851 -31.227 -25.926 -19.806 0.924 0.349 CAA PMK 2 PMK CAB CAB C 0 1 N N N 4.713 -22.407 -25.788 -10.932 1.250 -1.453 CAB PMK 3 PMK CAC CAC C 0 1 N N N 7.279 -24.819 -37.034 8.655 1.115 -1.518 CAC PMK 4 PMK CAD CAD C 0 1 N N N 0.511 -18.932 -27.543 -6.277 -2.001 -0.516 CAD PMK 5 PMK CAE CAE C 0 1 N N N 8.671 -20.515 -33.266 3.962 -2.072 -0.550 CAE PMK 6 PMK CAF CAF C 0 1 N N N 4.311 -16.609 -33.082 -1.159 -2.282 -0.453 CAF PMK 7 PMK OAG OAG O 0 1 N N N 10.883 -31.139 -38.982 15.426 -0.323 1.267 OAG PMK 8 PMK OAL OAL O 0 1 N N N 9.776 -30.818 -36.895 15.411 2.063 0.443 OAL PMK 9 PMK CAM CAM C 0 1 N N N 6.454 -29.851 -26.117 -18.556 0.613 -0.475 CAM PMK 10 PMK CAN CAN C 0 1 N N N 5.419 -28.864 -26.585 -17.312 0.792 0.397 CAN PMK 11 PMK CAO CAO C 0 1 N N N 6.134 -27.632 -27.135 -16.061 0.482 -0.428 CAO PMK 12 PMK CAP CAP C 0 1 N N N 5.148 -26.593 -27.632 -14.817 0.660 0.445 CAP PMK 13 PMK CAQ CAQ C 0 1 N N N 4.878 -25.550 -26.559 -13.567 0.350 -0.380 CAQ PMK 14 PMK CAR CAR C 0 1 N N N 10.208 -27.155 -36.956 11.284 0.178 -0.462 CAR PMK 15 PMK CAS CAS C 0 1 N N N 2.465 -21.216 -26.883 -8.604 -0.157 -0.223 CAS PMK 16 PMK CAT CAT C 0 1 N N N 8.094 -23.896 -34.321 6.317 -0.260 -0.273 CAT PMK 17 PMK CAU CAU C 0 1 N N N 2.746 -18.233 -30.281 -3.642 -0.668 -0.084 CAU PMK 18 PMK CAV CAV C 0 1 N N N 6.109 -19.484 -32.849 1.349 -0.703 -0.101 CAV PMK 19 PMK CAX CAX C 0 1 N N N 10.710 -27.998 -38.115 12.545 0.472 0.355 CAX PMK 20 PMK CAY CAY C 0 1 N N N 4.202 -24.339 -27.206 -12.323 0.528 0.493 CAY PMK 21 PMK CAZ CAZ C 0 1 N N N 9.411 -25.945 -37.408 10.049 0.374 0.419 CAZ PMK 22 PMK CBA CBA C 0 1 N N N 2.365 -22.723 -26.711 -9.839 0.275 0.572 CBA PMK 23 PMK CBB CBB C 0 1 N N N 9.064 -24.476 -35.370 7.562 0.155 0.514 CBB PMK 24 PMK CBC CBC C 0 1 N N N 1.843 -20.857 -28.255 -7.371 -0.100 0.680 CBC PMK 25 PMK CBD CBD C 0 1 N N N 7.815 -22.403 -34.609 5.090 -0.186 0.639 CBD PMK 26 PMK CBE CBE C 0 1 N N N 1.464 -18.939 -29.858 -4.886 -0.356 0.750 CBE PMK 27 PMK CBF CBF C 0 1 N N N 6.197 -20.971 -33.252 2.603 -0.407 0.725 CBF PMK 28 PMK CBG CBG C 0 1 N N N 2.762 -17.920 -31.776 -2.392 -0.493 0.780 CBG PMK 29 PMK CBH CBH C 0 1 N N N 4.634 -19.019 -33.077 0.107 -0.510 0.772 CBH PMK 30 PMK OBI OBI O 0 1 N N N 9.710 -28.841 -38.604 13.698 0.289 -0.468 OBI PMK 31 PMK CBL CBL C 0 1 N N R 3.645 -23.384 -26.163 -11.072 0.218 -0.332 CBL PMK 32 PMK CBM CBM C 0 1 N N R 8.441 -25.459 -36.341 8.788 0.081 -0.397 CBM PMK 33 PMK CBN CBN C 0 1 N N S 1.658 -19.344 -28.390 -6.136 -0.531 -0.115 CBN PMK 34 PMK CBO CBO C 0 1 N N S 7.628 -21.575 -33.331 3.845 -0.600 -0.148 CBO PMK 35 PMK CBP CBP C 0 1 N N S 4.222 -17.807 -32.246 -1.147 -0.805 -0.053 CBP PMK 36 PMK PBV PBV P 0 1 N N N 9.729 -30.409 -38.347 15.201 0.512 0.066 PBV PMK 37 PMK H1 H1 H 0 1 N N N 8.813 -31.823 -39.472 17.174 0.201 -0.830 H1 PMK 38 PMK HAA2 HAA2 H 0 0 N N N 6.630 -31.925 -25.585 -19.859 0.244 1.200 HAA2 PMK 39 PMK HAA1 HAA1 H 0 0 N N N 5.050 -31.175 -25.174 -19.759 1.952 0.708 HAA1 PMK 40 PMK HAA3 HAA3 H 0 0 N N N 5.435 -31.581 -26.881 -20.693 0.797 -0.273 HAA3 PMK 41 PMK HAB2 HAB2 H 0 0 N N N 4.323 -21.709 -25.033 -11.810 1.209 -2.096 HAB2 PMK 42 PMK HAB1 HAB1 H 0 0 N N N 5.577 -22.949 -25.375 -10.843 2.246 -1.020 HAB1 PMK 43 PMK HAB3 HAB3 H 0 0 N N N 5.025 -21.845 -26.680 -10.040 1.028 -2.040 HAB3 PMK 44 PMK HAC1 HAC1 H 0 0 N N N 6.559 -24.457 -36.285 7.757 0.906 -2.099 HAC1 PMK 45 PMK HAC2 HAC2 H 0 0 N N N 7.634 -23.973 -37.640 8.583 2.112 -1.085 HAC2 PMK 46 PMK HAC3 HAC3 H 0 0 N N N 6.790 -25.557 -37.686 9.529 1.062 -2.167 HAC3 PMK 47 PMK HAD1 HAD1 H 0 0 N N N 0.693 -19.242 -26.503 -6.365 -2.616 0.380 HAD1 PMK 48 PMK HAD2 HAD2 H 0 0 N N N 0.398 -17.839 -27.586 -7.167 -2.126 -1.132 HAD2 PMK 49 PMK HAD3 HAD3 H 0 0 N N N -0.408 -19.410 -27.913 -5.397 -2.308 -1.082 HAD3 PMK 50 PMK HAE3 HAE3 H 0 0 N N N 8.536 -19.922 -32.349 4.048 -2.687 0.345 HAE3 PMK 51 PMK HAE1 HAE1 H 0 0 N N N 9.667 -20.981 -33.257 3.075 -2.367 -1.110 HAE1 PMK 52 PMK HAE2 HAE2 H 0 0 N N N 8.581 -19.858 -34.144 4.846 -2.209 -1.172 HAE2 PMK 53 PMK HAF1 HAF1 H 0 0 N N N 4.016 -15.728 -32.493 -1.160 -2.901 0.444 HAF1 PMK 54 PMK HAF3 HAF3 H 0 0 N N N 5.345 -16.485 -33.435 -2.052 -2.492 -1.041 HAF3 PMK 55 PMK HAF2 HAF2 H 0 0 N N N 3.639 -16.714 -33.946 -0.272 -2.504 -1.047 HAF2 PMK 56 PMK H2 H2 H 0 1 N N N 10.502 -31.415 -36.757 15.279 2.670 -0.298 H2 PMK 57 PMK HAM1 HAM1 H 0 0 N N N 7.257 -29.912 -26.867 -18.603 -0.415 -0.835 HAM1 PMK 58 PMK HAM2 HAM2 H 0 0 N N N 6.872 -29.506 -25.160 -18.503 1.293 -1.326 HAM2 PMK 59 PMK HAN1 HAN1 H 0 0 N N N 4.776 -28.573 -25.741 -17.264 1.820 0.756 HAN1 PMK 60 PMK HAN2 HAN2 H 0 0 N N N 4.804 -29.319 -27.375 -17.364 0.112 1.248 HAN2 PMK 61 PMK HAO2 HAO2 H 0 0 N N N 6.782 -27.938 -27.970 -16.109 -0.547 -0.786 HAO2 PMK 62 PMK HAO1 HAO1 H 0 0 N N N 6.748 -27.189 -26.337 -16.009 1.161 -1.278 HAO1 PMK 63 PMK HAP1 HAP1 H 0 0 N N N 5.564 -26.097 -28.521 -14.770 1.688 0.804 HAP1 PMK 64 PMK HAP2 HAP2 H 0 0 N N N 4.203 -27.090 -27.898 -14.870 -0.020 1.296 HAP2 PMK 65 PMK HAQ2 HAQ2 H 0 0 N N N 4.217 -25.975 -25.789 -13.614 -0.678 -0.738 HAQ2 PMK 66 PMK HAQ1 HAQ1 H 0 0 N N N 5.827 -25.240 -26.097 -13.514 1.029 -1.230 HAQ1 PMK 67 PMK HAR1 HAR1 H 0 0 N N N 9.565 -27.781 -36.319 11.236 0.859 -1.312 HAR1 PMK 68 PMK HAR2 HAR2 H 0 0 N N N 11.074 -26.807 -36.374 11.315 -0.850 -0.821 HAR2 PMK 69 PMK HAS1 HAS1 H 0 0 N N N 3.520 -20.905 -26.857 -8.743 -1.176 -0.585 HAS1 PMK 70 PMK HAS2 HAS2 H 0 0 N N N 1.913 -20.709 -26.077 -8.465 0.514 -1.071 HAS2 PMK 71 PMK HAT2 HAT2 H 0 0 N N N 7.147 -24.455 -34.356 6.181 0.413 -1.119 HAT2 PMK 72 PMK HAT1 HAT1 H 0 0 N N N 8.541 -23.994 -33.321 6.439 -1.280 -0.635 HAT1 PMK 73 PMK HAU1 HAU1 H 0 0 N N N 3.603 -18.881 -30.045 -3.694 -1.696 -0.443 HAU1 PMK 74 PMK HAU2 HAU2 H 0 0 N N N 2.834 -17.291 -29.720 -3.594 0.012 -0.934 HAU2 PMK 75 PMK HAV2 HAV2 H 0 0 N N N 6.380 -19.366 -31.789 1.305 -0.022 -0.951 HAV2 PMK 76 PMK HAV1 HAV1 H 0 0 N N N 6.791 -18.886 -33.471 1.384 -1.731 -0.460 HAV1 PMK 77 PMK HAX2 HAX2 H 0 0 N N N 11.557 -28.610 -37.772 12.514 1.500 0.714 HAX2 PMK 78 PMK HAX1 HAX1 H 0 0 N N N 11.043 -27.331 -38.924 12.593 -0.209 1.205 HAX1 PMK 79 PMK HAY2 HAY2 H 0 0 N N N 4.941 -23.804 -27.821 -12.275 1.556 0.852 HAY2 PMK 80 PMK HAY1 HAY1 H 0 0 N N N 3.378 -24.689 -27.845 -12.375 -0.151 1.344 HAY1 PMK 81 PMK HAZ1 HAZ1 H 0 0 N N N 10.110 -25.130 -37.647 10.097 -0.306 1.269 HAZ1 PMK 82 PMK HAZ2 HAZ2 H 0 0 N N N 8.840 -26.214 -38.309 10.018 1.403 0.778 HAZ2 PMK 83 PMK HBA2 HBA2 H 0 0 N N N 1.541 -22.936 -26.014 -9.978 -0.396 1.419 HBA2 PMK 84 PMK HBA1 HBA1 H 0 0 N N N 2.140 -23.168 -27.692 -9.700 1.294 0.933 HBA1 PMK 85 PMK HBB1 HBB1 H 0 0 N N N 9.876 -24.991 -34.836 7.439 1.175 0.877 HBB1 PMK 86 PMK HBB2 HBB2 H 0 0 N N N 9.480 -23.639 -35.951 7.697 -0.518 1.361 HBB2 PMK 87 PMK HBC2 HBC2 H 0 0 N N N 0.864 -21.349 -28.347 -7.232 0.919 1.042 HBC2 PMK 88 PMK HBC1 HBC1 H 0 0 N N N 2.508 -21.212 -29.056 -7.510 -0.771 1.528 HBC1 PMK 89 PMK HBD2 HBD2 H 0 0 N N N 8.663 -21.990 -35.174 5.225 -0.859 1.486 HBD2 PMK 90 PMK HBD1 HBD1 H 0 0 N N N 6.899 -22.327 -35.214 4.968 0.835 1.001 HBD1 PMK 91 PMK HBE2 HBE2 H 0 0 N N N 0.605 -18.259 -29.955 -4.934 -1.036 1.600 HBE2 PMK 92 PMK HBE1 HBE1 H 0 0 N N N 1.297 -19.831 -30.480 -4.834 0.672 1.109 HBE1 PMK 93 PMK HBF1 HBF1 H 0 0 N N N 5.732 -21.079 -34.243 2.567 0.621 1.085 HBF1 PMK 94 PMK HBF2 HBF2 H 0 0 N N N 5.627 -21.554 -32.514 2.647 -1.088 1.575 HBF2 PMK 95 PMK HBG2 HBG2 H 0 0 N N N 2.240 -16.969 -31.960 -2.340 0.535 1.140 HBG2 PMK 96 PMK HBG1 HBG1 H 0 0 N N N 2.258 -18.727 -32.328 -2.440 -1.173 1.631 HBG1 PMK 97 PMK HBH1 HBH1 H 0 0 N N N 4.513 -18.765 -34.140 0.151 -1.191 1.622 HBH1 PMK 98 PMK HBH2 HBH2 H 0 0 N N N 3.966 -19.855 -32.822 0.071 0.518 1.132 HBH2 PMK 99 PMK HBL1 HBL1 H 0 0 N N N 3.373 -23.967 -25.271 -11.160 -0.779 -0.764 HBL1 PMK 100 PMK HBM1 HBM1 H 0 0 N N N 8.080 -26.330 -35.774 8.860 -0.917 -0.830 HBM1 PMK 101 PMK HBN1 HBN1 H 0 0 N N N 2.568 -18.852 -28.017 -6.048 0.083 -1.010 HBN1 PMK 102 PMK HBO1 HBO1 H 0 0 N N N 7.757 -22.246 -32.469 3.759 0.016 -1.043 HBO1 PMK 103 PMK HBP1 HBP1 H 0 0 N N N 4.883 -17.717 -31.371 -1.146 -0.186 -0.950 HBP1 PMK 104 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PMK OAG PBV DOUB N N 1 PMK O1 PBV SING N N 2 PMK OBI PBV SING N N 3 PMK OBI CAX SING N N 4 PMK PBV OAL SING N N 5 PMK CAX CAR SING N N 6 PMK CAZ CAR SING N N 7 PMK CAZ CBM SING N N 8 PMK CAC CBM SING N N 9 PMK CBM CBB SING N N 10 PMK CBB CAT SING N N 11 PMK CBD CAT SING N N 12 PMK CBD CBO SING N N 13 PMK CBO CAE SING N N 14 PMK CBO CBF SING N N 15 PMK CBF CAV SING N N 16 PMK CAF CBP SING N N 17 PMK CBH CAV SING N N 18 PMK CBH CBP SING N N 19 PMK CBP CBG SING N N 20 PMK CBG CAU SING N N 21 PMK CAU CBE SING N N 22 PMK CBE CBN SING N N 23 PMK CBN CBC SING N N 24 PMK CBN CAD SING N N 25 PMK CBC CAS SING N N 26 PMK CAP CAO SING N N 27 PMK CAP CAQ SING N N 28 PMK CAY CAQ SING N N 29 PMK CAY CBL SING N N 30 PMK CAO CAN SING N N 31 PMK CAS CBA SING N N 32 PMK CBA CBL SING N N 33 PMK CAN CAM SING N N 34 PMK CBL CAB SING N N 35 PMK CAM CAA SING N N 36 PMK O1 H1 SING N N 37 PMK CAA HAA2 SING N N 38 PMK CAA HAA1 SING N N 39 PMK CAA HAA3 SING N N 40 PMK CAB HAB2 SING N N 41 PMK CAB HAB1 SING N N 42 PMK CAB HAB3 SING N N 43 PMK CAC HAC1 SING N N 44 PMK CAC HAC2 SING N N 45 PMK CAC HAC3 SING N N 46 PMK CAD HAD1 SING N N 47 PMK CAD HAD2 SING N N 48 PMK CAD HAD3 SING N N 49 PMK CAE HAE3 SING N N 50 PMK CAE HAE1 SING N N 51 PMK CAE HAE2 SING N N 52 PMK CAF HAF1 SING N N 53 PMK CAF HAF3 SING N N 54 PMK CAF HAF2 SING N N 55 PMK OAL H2 SING N N 56 PMK CAM HAM1 SING N N 57 PMK CAM HAM2 SING N N 58 PMK CAN HAN1 SING N N 59 PMK CAN HAN2 SING N N 60 PMK CAO HAO2 SING N N 61 PMK CAO HAO1 SING N N 62 PMK CAP HAP1 SING N N 63 PMK CAP HAP2 SING N N 64 PMK CAQ HAQ2 SING N N 65 PMK CAQ HAQ1 SING N N 66 PMK CAR HAR1 SING N N 67 PMK CAR HAR2 SING N N 68 PMK CAS HAS1 SING N N 69 PMK CAS HAS2 SING N N 70 PMK CAT HAT2 SING N N 71 PMK CAT HAT1 SING N N 72 PMK CAU HAU1 SING N N 73 PMK CAU HAU2 SING N N 74 PMK CAV HAV2 SING N N 75 PMK CAV HAV1 SING N N 76 PMK CAX HAX2 SING N N 77 PMK CAX HAX1 SING N N 78 PMK CAY HAY2 SING N N 79 PMK CAY HAY1 SING N N 80 PMK CAZ HAZ1 SING N N 81 PMK CAZ HAZ2 SING N N 82 PMK CBA HBA2 SING N N 83 PMK CBA HBA1 SING N N 84 PMK CBB HBB1 SING N N 85 PMK CBB HBB2 SING N N 86 PMK CBC HBC2 SING N N 87 PMK CBC HBC1 SING N N 88 PMK CBD HBD2 SING N N 89 PMK CBD HBD1 SING N N 90 PMK CBE HBE2 SING N N 91 PMK CBE HBE1 SING N N 92 PMK CBF HBF1 SING N N 93 PMK CBF HBF2 SING N N 94 PMK CBG HBG2 SING N N 95 PMK CBG HBG1 SING N N 96 PMK CBH HBH1 SING N N 97 PMK CBH HBH2 SING N N 98 PMK CBL HBL1 SING N N 99 PMK CBM HBM1 SING N N 100 PMK CBN HBN1 SING N N 101 PMK CBO HBO1 SING N N 102 PMK CBP HBP1 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PMK SMILES ACDLabs 12.01 "O=P(OCCCC(CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCCCCC)C)(O)O" PMK InChI InChI 1.03 "InChI=1S/C32H67O4P/c1-7-8-9-10-11-17-28(2)18-12-19-29(3)20-13-21-30(4)22-14-23-31(5)24-15-25-32(6)26-16-27-36-37(33,34)35/h28-32H,7-27H2,1-6H3,(H2,33,34,35)/t28-,29+,30+,31+,32-/m1/s1" PMK InChIKey InChI 1.03 WLNOCCJMGSEDAT-GCIGRYLYSA-N PMK SMILES_CANONICAL CACTVS 3.385 "CCCCCCC[C@@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@@H](C)CCCO[P](O)(O)=O" PMK SMILES CACTVS 3.385 "CCCCCCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCC[CH](C)CCCO[P](O)(O)=O" PMK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCCCC[C@@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@H](C)CCC[C@@H](C)CCCOP(=O)(O)O" PMK SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCC(C)CCCOP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PMK "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,8S,16S,20R)-4,8,12,16,20-pentamethylheptacosyl dihydrogen phosphate" PMK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(4R,8S,12S,16S,20R)-4,8,12,16,20-pentamethylheptacosyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PMK "Create component" 2014-02-25 RCSB PMK "Initial release" 2014-10-08 RCSB #