data_PMP # _chem_comp.id PMP _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H13 N2 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.173 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1A0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PMP N1 N1 N 0 1 Y N N N N N 22.307 10.699 29.043 1.991 -0.222 2.112 N1 PMP 1 PMP C2 C2 C 0 1 Y N N N N N 23.535 11.299 29.218 1.197 -0.071 3.154 C2 PMP 2 PMP C2A C2A C 0 1 N N N N N N 24.217 11.936 28.014 1.768 -0.159 4.546 C2A PMP 3 PMP C3 C3 C 0 1 Y N N N N N 24.138 11.311 30.475 -0.158 0.160 2.982 C3 PMP 4 PMP O3 O3 O 0 1 N N N N N N 25.365 11.933 30.682 -0.973 0.315 4.058 O3 PMP 5 PMP C4 C4 C 0 1 Y N N N N N 23.499 10.724 31.544 -0.671 0.244 1.691 C4 PMP 6 PMP C4A C4A C 0 1 N N N N N N 24.217 10.682 32.929 -2.137 0.501 1.458 C4A PMP 7 PMP N4A N4A N 0 1 N N N N N N 23.703 11.484 33.907 -2.856 -0.778 1.396 N4A PMP 8 PMP C5 C5 C 0 1 Y N N N N N 22.246 10.130 31.357 0.198 0.079 0.625 C5 PMP 9 PMP C6 C6 C 0 1 Y N N N N N 21.665 10.118 30.107 1.537 -0.155 0.877 C6 PMP 10 PMP C5A C5A C 0 1 N N N N N N 21.467 9.569 32.537 -0.309 0.155 -0.791 C5A PMP 11 PMP O4P O4P O 0 1 N N N N N N 21.766 8.201 32.700 0.776 -0.046 -1.698 O4P PMP 12 PMP P P P 0 1 N N N N N N 21.700 7.606 34.133 0.165 0.046 -3.184 P PMP 13 PMP O1P O1P O 0 1 N N N N N N 22.345 6.318 34.075 -0.444 1.379 -3.384 O1P PMP 14 PMP O2P O2P O 0 1 N N N N N N 20.174 7.353 34.291 1.340 -0.173 -4.262 O2P PMP 15 PMP O3P O3P O 0 1 N N N N N N 22.143 8.621 35.112 -0.957 -1.091 -3.375 O3P PMP 16 PMP H2A1 1H2A H 0 0 N N N N N N 25.210 12.421 28.155 2.085 0.831 4.871 H2A1 PMP 17 PMP H2A2 2H2A H 0 0 N N N N N N 24.299 11.176 27.202 1.007 -0.539 5.227 H2A2 PMP 18 PMP H2A3 3H2A H 0 0 N N N N N N 23.518 12.671 27.551 2.625 -0.832 4.545 H2A3 PMP 19 PMP HO3 HO3 H 0 1 N N N N N N 25.775 11.941 31.538 -1.305 -0.564 4.286 HO3 PMP 20 PMP H4A1 1H4A H 0 0 N N N N N N 24.265 9.629 33.294 -2.535 1.102 2.276 H4A1 PMP 21 PMP H4A2 2H4A H 0 0 N N N N N N 25.302 10.901 32.795 -2.267 1.037 0.517 H4A2 PMP 22 PMP HNA1 1HNA H 0 0 N N N N N N 24.172 11.456 34.812 -3.828 -0.558 1.239 HNA1 PMP 23 PMP HNA2 2HNA H 0 0 N N N N N N 22.710 11.283 34.029 -2.529 -1.253 0.568 HNA2 PMP 24 PMP H6 H6 H 0 1 N N N N N N 20.681 9.641 29.957 2.220 -0.284 0.050 H6 PMP 25 PMP H5A1 1H5A H 0 0 N N N N N N 21.644 10.151 33.471 -1.062 -0.617 -0.949 H5A1 PMP 26 PMP H5A2 2H5A H 0 0 N N N N N N 20.371 9.749 32.439 -0.752 1.135 -0.967 H5A2 PMP 27 PMP HOP2 2HOP H 0 0 N N N N N N 20.133 6.989 35.167 0.933 -0.109 -5.137 HOP2 PMP 28 PMP HOP3 3HOP H 0 0 N N N N N N 22.102 8.257 35.988 -0.519 -1.942 -3.237 HOP3 PMP 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PMP N1 C2 DOUB Y N 1 PMP N1 C6 SING Y N 2 PMP C2 C2A SING N N 3 PMP C2 C3 SING Y N 4 PMP C2A H2A1 SING N N 5 PMP C2A H2A2 SING N N 6 PMP C2A H2A3 SING N N 7 PMP C3 O3 SING N N 8 PMP C3 C4 DOUB Y N 9 PMP O3 HO3 SING N N 10 PMP C4 C4A SING N N 11 PMP C4 C5 SING Y N 12 PMP C4A N4A SING N N 13 PMP C4A H4A1 SING N N 14 PMP C4A H4A2 SING N N 15 PMP N4A HNA1 SING N N 16 PMP N4A HNA2 SING N N 17 PMP C5 C6 DOUB Y N 18 PMP C5 C5A SING N N 19 PMP C6 H6 SING N N 20 PMP C5A O4P SING N N 21 PMP C5A H5A1 SING N N 22 PMP C5A H5A2 SING N N 23 PMP O4P P SING N N 24 PMP P O1P DOUB N N 25 PMP P O2P SING N N 26 PMP P O3P SING N N 27 PMP O2P HOP2 SING N N 28 PMP O3P HOP3 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PMP SMILES ACDLabs 10.04 "O=P(O)(O)OCc1cnc(c(O)c1CN)C" PMP SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN)c1O" PMP SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CN)c1O" PMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN)O" PMP SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN)O" PMP InChI InChI 1.03 "InChI=1S/C8H13N2O5P/c1-5-8(11)7(2-9)6(3-10-5)4-15-16(12,13)14/h3,11H,2,4,9H2,1H3,(H2,12,13,14)" PMP InChIKey InChI 1.03 ZMJGSOSNSPKHNH-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PMP "SYSTEMATIC NAME" ACDLabs 10.04 "[4-(aminomethyl)-5-hydroxy-6-methylpyridin-3-yl]methyl dihydrogen phosphate" PMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-(aminomethyl)-5-hydroxy-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PMP "Create component" 1999-07-08 RCSB PMP "Modify descriptor" 2011-06-04 RCSB PMP "Modify synonyms" 2020-06-05 PDBE PMP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PMP _pdbx_chem_comp_synonyms.name "PYRIDOXAMINE-5'-PHOSPHATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PMP _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4A _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #