data_PN6 # _chem_comp.id PN6 _chem_comp.name "(3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Plinabulin _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-08-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 336.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PN6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5C8Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PN6 C6 C1 C 0 1 N N N -15.109 -65.896 39.828 -1.770 0.419 -0.424 C6 PN6 1 PN6 C2 C2 C 0 1 Y N N -15.674 -65.700 41.007 -2.852 -0.468 0.018 C2 PN6 2 PN6 C4 C3 C 0 1 Y N N -16.885 -64.866 42.491 -3.918 -2.259 0.611 C4 PN6 3 PN6 C23 C4 C 0 1 N N N -14.638 -68.017 43.734 -6.191 1.260 0.600 C23 PN6 4 PN6 C22 C5 C 0 1 N N N -14.511 -67.485 42.348 -4.714 1.293 0.203 C22 PN6 5 PN6 C24 C6 C 0 1 N N N -13.091 -67.083 42.198 -4.583 1.806 -1.232 C24 PN6 6 PN6 C25 C7 C 0 1 N N N -14.822 -68.580 41.376 -3.952 2.222 1.149 C25 PN6 7 PN6 C1 C8 C 0 1 Y N N -15.465 -66.332 42.133 -4.139 -0.098 0.294 C1 PN6 8 PN6 N5 N1 N 0 1 Y N N -16.221 -65.827 43.061 -4.801 -1.229 0.666 N5 PN6 9 PN6 N3 N2 N 0 1 Y N N -16.555 -64.791 41.235 -2.760 -1.807 0.221 N3 PN6 10 PN6 C7 C9 C 0 1 N N N -15.787 -65.376 38.767 -0.514 -0.069 -0.581 C7 PN6 11 PN6 C8 C10 C 0 1 N N N -15.482 -65.618 37.456 0.601 0.839 -0.872 C8 PN6 12 PN6 O20 O1 O 0 1 N N N -14.550 -66.319 37.143 0.384 1.981 -1.234 O20 PN6 13 PN6 N9 N3 N 0 1 N N N -16.227 -65.070 36.458 1.870 0.400 -0.733 N9 PN6 14 PN6 N12 N4 N 0 1 N N N -16.823 -64.580 39.066 -0.272 -1.444 -0.463 N12 PN6 15 PN6 C11 C11 C 0 1 N N N -17.579 -64.018 38.086 0.998 -1.885 -0.335 C11 PN6 16 PN6 O21 O2 O 0 1 N N N -18.510 -63.308 38.424 1.226 -3.075 -0.229 O21 PN6 17 PN6 C10 C12 C 0 1 N N N -17.281 -64.273 36.768 2.102 -0.912 -0.314 C10 PN6 18 PN6 C13 C13 C 0 1 N N N -18.039 -63.682 35.792 3.335 -1.287 0.103 C13 PN6 19 PN6 C14 C14 C 0 1 Y N N -18.100 -64.215 34.531 4.388 -0.278 0.284 C14 PN6 20 PN6 C15 C15 C 0 1 Y N N -17.980 -65.552 34.317 4.050 1.041 0.609 C15 PN6 21 PN6 C16 C16 C 0 1 Y N N -18.074 -66.021 33.017 5.044 1.981 0.777 C16 PN6 22 PN6 C17 C17 C 0 1 Y N N -18.303 -65.177 31.954 6.373 1.624 0.627 C17 PN6 23 PN6 C18 C18 C 0 1 Y N N -18.439 -63.840 32.177 6.715 0.322 0.306 C18 PN6 24 PN6 C19 C19 C 0 1 Y N N -18.339 -63.373 33.468 5.734 -0.632 0.140 C19 PN6 25 PN6 H1 H1 H 0 1 N N N -14.177 -66.430 39.714 -1.974 1.460 -0.628 H1 PN6 26 PN6 H2 H2 H 0 1 N N N -17.602 -64.227 42.985 -4.140 -3.288 0.850 H2 PN6 27 PN6 H3 H3 H 0 1 N N N -14.411 -67.219 44.456 -6.734 0.598 -0.074 H3 PN6 28 PN6 H4 H4 H 0 1 N N N -15.665 -68.377 43.896 -6.285 0.894 1.622 H4 PN6 29 PN6 H5 H5 H 0 1 N N N -13.932 -68.849 43.873 -6.607 2.266 0.534 H5 PN6 30 PN6 H6 H6 H 0 1 N N N -12.860 -66.278 42.911 -4.999 2.812 -1.298 H6 PN6 31 PN6 H7 H7 H 0 1 N N N -12.442 -67.948 42.399 -3.530 1.829 -1.515 H7 PN6 32 PN6 H8 H8 H 0 1 N N N -12.918 -66.725 41.173 -5.126 1.144 -1.906 H8 PN6 33 PN6 H9 H9 H 0 1 N N N -14.128 -69.419 41.533 -4.046 1.856 2.172 H9 PN6 34 PN6 H10 H10 H 0 1 N N N -15.855 -68.925 41.531 -2.900 2.245 0.866 H10 PN6 35 PN6 H11 H11 H 0 1 N N N -14.713 -68.201 40.349 -4.368 3.228 1.084 H11 PN6 36 PN6 H12 H12 H 0 1 N N N -16.280 -66.118 44.016 -5.734 -1.288 0.927 H12 PN6 37 PN6 H14 H14 H 0 1 N N N -17.043 -64.397 40.024 -1.010 -2.073 -0.472 H14 PN6 38 PN6 H15 H15 H 0 1 N N N -18.596 -62.785 36.019 3.544 -2.328 0.301 H15 PN6 39 PN6 H17 H17 H 0 1 N N N -17.815 -66.232 35.140 3.014 1.321 0.726 H17 PN6 40 PN6 H18 H18 H 0 1 N N N -17.964 -67.079 32.832 4.785 3.000 1.028 H18 PN6 41 PN6 H19 H19 H 0 1 N N N -18.374 -65.572 30.951 7.147 2.367 0.756 H19 PN6 42 PN6 H20 H20 H 0 1 N N N -18.622 -63.160 31.358 7.755 0.052 0.190 H20 PN6 43 PN6 H21 H21 H 0 1 N N N -18.451 -62.315 33.653 6.003 -1.647 -0.111 H21 PN6 44 PN6 H13 H13 H 0 1 N N N -15.999 -65.253 35.502 2.615 0.992 -0.924 H13 PN6 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PN6 C17 C18 DOUB Y N 1 PN6 C17 C16 SING Y N 2 PN6 C18 C19 SING Y N 3 PN6 C16 C15 DOUB Y N 4 PN6 C19 C14 DOUB Y N 5 PN6 C15 C14 SING Y N 6 PN6 C14 C13 SING N N 7 PN6 C13 C10 DOUB N Z 8 PN6 N9 C10 SING N N 9 PN6 N9 C8 SING N N 10 PN6 C10 C11 SING N N 11 PN6 O20 C8 DOUB N N 12 PN6 C8 C7 SING N N 13 PN6 C11 O21 DOUB N N 14 PN6 C11 N12 SING N N 15 PN6 C7 N12 SING N N 16 PN6 C7 C6 DOUB N Z 17 PN6 C6 C2 SING N N 18 PN6 C2 N3 SING Y N 19 PN6 C2 C1 DOUB Y N 20 PN6 N3 C4 DOUB Y N 21 PN6 C25 C22 SING N N 22 PN6 C1 C22 SING N N 23 PN6 C1 N5 SING Y N 24 PN6 C24 C22 SING N N 25 PN6 C22 C23 SING N N 26 PN6 C4 N5 SING Y N 27 PN6 C6 H1 SING N N 28 PN6 C4 H2 SING N N 29 PN6 C23 H3 SING N N 30 PN6 C23 H4 SING N N 31 PN6 C23 H5 SING N N 32 PN6 C24 H6 SING N N 33 PN6 C24 H7 SING N N 34 PN6 C24 H8 SING N N 35 PN6 C25 H9 SING N N 36 PN6 C25 H10 SING N N 37 PN6 C25 H11 SING N N 38 PN6 N5 H12 SING N N 39 PN6 N12 H14 SING N N 40 PN6 C13 H15 SING N N 41 PN6 C15 H17 SING N N 42 PN6 C16 H18 SING N N 43 PN6 C17 H19 SING N N 44 PN6 C18 H20 SING N N 45 PN6 C19 H21 SING N N 46 PN6 N9 H13 SING N N 47 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PN6 SMILES ACDLabs 12.01 "[C@H](c1ncnc1C(C)(C)C)=C2NC(=O)C(NC2=O)=[C@H]c3ccccc3" PN6 InChI InChI 1.03 "InChI=1S/C19H20N4O2/c1-19(2,3)16-13(20-11-21-16)10-15-18(25)22-14(17(24)23-15)9-12-7-5-4-6-8-12/h4-11H,1-3H3,(H,20,21)(H,22,25)(H,23,24)/b14-9-,15-10-" PN6 InChIKey InChI 1.03 UNRCMCRRFYFGFX-TYPNBTCFSA-N PN6 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1[nH]cnc1/C=C/2NC(=O)C(/NC/2=O)=C/c3ccccc3" PN6 SMILES CACTVS 3.385 "CC(C)(C)c1[nH]cnc1C=C2NC(=O)C(NC2=O)=Cc3ccccc3" PN6 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(C)c1c(nc[nH]1)/C=C\2/C(=O)N/C(=C\c3ccccc3)/C(=O)N2" PN6 SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)(C)c1c(nc[nH]1)C=C2C(=O)NC(=Cc3ccccc3)C(=O)N2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PN6 "SYSTEMATIC NAME" ACDLabs 12.01 "(3Z,6Z)-3-benzylidene-6-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]piperazine-2,5-dione" PN6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(3Z,6Z)-3-[(5-tert-butyl-1H-imidazol-4-yl)methylidene]-6-(phenylmethylidene)piperazine-2,5-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PN6 "Create component" 2015-08-28 PDBJ PN6 "Initial release" 2015-11-04 RCSB PN6 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PN6 _pdbx_chem_comp_synonyms.name Plinabulin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##