data_PN7 # _chem_comp.id PN7 _chem_comp.name "N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H23 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-07-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.348 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PN7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2MY5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PN7 O3 O3 O 0 1 N N N N N N 0.436 -6.714 -12.881 -3.028 -3.156 0.780 O3 PN7 1 PN7 O4 O4 O 0 1 N N N N N N 2.112 -8.210 -11.193 -0.925 -1.927 1.742 O4 PN7 2 PN7 C2 C2 C 0 1 N N N N N N -0.469 -6.677 -10.652 -2.875 -1.418 -0.891 C2 PN7 3 PN7 C1 C1 C 0 1 N N N N N N -0.673 -8.195 -10.678 -3.186 -0.302 0.109 C1 PN7 4 PN7 P P P 0 1 N N N N N N 0.121 -10.335 -9.781 -4.344 2.104 0.189 P PN7 5 PN7 O1P O1P O 0 1 N N N N N N -1.105 -10.897 -10.392 -5.182 3.020 -0.836 O1P PN7 6 PN7 O2P O2P O 0 1 N N N N N N 1.420 -10.468 -10.479 -5.199 1.746 1.343 O2P PN7 7 PN7 O3P O3P O 0 1 N N N N N N -0.136 -8.773 -9.484 -3.864 0.763 -0.560 O3P PN7 8 PN7 CE1 CE1 C 0 1 N N N N N N -0.186 -6.221 -9.220 -4.180 -1.942 -1.493 CE1 PN7 9 PN7 CE2 CE2 C 0 1 N N N N N N -1.731 -5.980 -11.165 -1.984 -0.868 -2.007 CE2 PN7 10 PN7 C3 C3 C 0 1 N N S N N N 0.712 -6.305 -11.548 -2.149 -2.558 -0.175 C3 PN7 11 PN7 C4 C4 C 0 1 N N N N N N 1.974 -7.011 -11.057 -0.934 -2.015 0.532 C4 PN7 12 PN7 N5 N5 N 0 1 N N N N N N 2.968 -6.256 -10.671 0.142 -1.627 -0.180 N5 PN7 13 PN7 C6 C6 C 0 1 N N N N N N 4.340 -6.831 -10.566 1.364 -1.205 0.510 C6 PN7 14 PN7 C7 C7 C 0 1 N N N N N N 4.276 -8.182 -9.849 2.425 -0.819 -0.522 C7 PN7 15 PN7 C8 C8 C 0 1 N N N N N N 5.550 -8.387 -9.029 3.682 -0.385 0.188 C8 PN7 16 PN7 O8 O8 O 0 1 N N N N N N 6.650 -8.244 -9.525 3.724 -0.385 1.400 O8 PN7 17 PN7 N9 N9 N 0 1 N N N N N N 5.411 -8.649 -7.758 4.758 0.003 -0.524 N9 PN7 18 PN7 C10 C10 C 0 1 N N N N N N 4.697 -9.884 -7.326 5.980 0.425 0.166 C10 PN7 19 PN7 C11 C11 C 0 1 N N N N N N 5.713 -11.002 -7.085 7.041 0.811 -0.867 C11 PN7 20 PN7 S12 S12 S 0 1 N N N N N N 7.359 -10.440 -7.586 8.553 1.334 -0.012 S12 PN7 21 PN7 H1 H1 H 0 1 N N N N N N 0.895 -7.525 -13.065 -3.343 -2.546 1.461 H1 PN7 22 PN7 H2 H2 H 0 1 N N N N N N -1.748 -8.419 -10.741 -3.821 -0.694 0.904 H2 PN7 23 PN7 H3 H3 H 0 1 N N N N N N -0.158 -8.618 -11.553 -2.256 0.071 0.538 H3 PN7 24 PN7 H4 H4 H 0 1 N N N N N N -0.887 -11.305 -11.222 -5.504 3.847 -0.451 H4 PN7 25 PN7 H5 H5 H 0 1 N N N N N N -1.036 -6.489 -8.575 -4.722 -1.118 -1.958 H5 PN7 26 PN7 H6 H6 H 0 1 N N N N N N 0.724 -6.716 -8.851 -3.956 -2.699 -2.243 H6 PN7 27 PN7 H7 H7 H 0 1 N N N N N N -0.043 -5.130 -9.204 -4.793 -2.381 -0.705 H7 PN7 28 PN7 H8 H8 H 0 1 N N N N N N -2.584 -6.245 -10.523 -2.546 -0.145 -2.598 H8 PN7 29 PN7 H9 H9 H 0 1 N N N N N N -1.582 -4.890 -11.145 -1.113 -0.380 -1.569 H9 PN7 30 PN7 H10 H10 H 0 1 N N N N N N -1.935 -6.303 -12.197 -1.658 -1.686 -2.648 H10 PN7 31 PN7 H11 H11 H 0 1 N N N N N N 0.868 -5.217 -11.503 -1.841 -3.307 -0.904 H11 PN7 32 PN7 H12 H12 H 0 1 N N N N N N 2.809 -5.295 -10.446 0.108 -1.627 -1.149 H12 PN7 33 PN7 H13 H13 H 0 1 N N N N N N 4.757 -6.971 -11.574 1.145 -0.347 1.145 H13 PN7 34 PN7 H14 H14 H 0 1 N N N N N N 4.982 -6.144 -9.996 1.736 -2.025 1.124 H14 PN7 35 PN7 H15 H15 H 0 1 N N N N N N 3.403 -8.201 -9.180 2.644 -1.677 -1.157 H15 PN7 36 PN7 H16 H16 H 0 1 N N N N N N 4.185 -8.987 -10.593 2.053 0.002 -1.136 H16 PN7 37 PN7 H17 H17 H 0 1 N N N N N N 5.783 -8.021 -7.074 4.724 0.003 -1.494 H17 PN7 38 PN7 H18 H18 H 0 1 N N N N N N 4.146 -9.683 -6.396 5.760 1.283 0.800 H18 PN7 39 PN7 H19 H19 H 0 1 N N N N N N 3.991 -10.193 -8.111 6.352 -0.395 0.780 H19 PN7 40 PN7 H20 H20 H 0 1 N N N N N N 5.432 -11.886 -7.676 7.260 -0.047 -1.501 H20 PN7 41 PN7 H21 H21 H 0 1 N N N N N N 5.724 -11.263 -6.017 6.669 1.632 -1.481 H21 PN7 42 PN7 H22 H22 H 0 1 N N N N N N 8.092 -11.481 -7.324 9.383 1.638 -1.026 H22 PN7 43 PN7 O4P O4P O 0 1 N Y N N N N ? ? ? -3.056 2.920 0.708 O4P PN7 44 PN7 H23 H23 H 0 1 N Y N N N N ? ? ? -2.451 3.188 0.004 H23 PN7 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PN7 O3 C3 SING N N 1 PN7 C3 C4 SING N N 2 PN7 C3 C2 SING N N 3 PN7 O4 C4 DOUB N N 4 PN7 CE2 C2 SING N N 5 PN7 C4 N5 SING N N 6 PN7 C1 C2 SING N N 7 PN7 C1 O3P SING N N 8 PN7 N5 C6 SING N N 9 PN7 C2 CE1 SING N N 10 PN7 C6 C7 SING N N 11 PN7 O2P P DOUB N N 12 PN7 O1P P SING N N 13 PN7 C7 C8 SING N N 14 PN7 P O3P SING N N 15 PN7 O8 C8 DOUB N N 16 PN7 C8 N9 SING N N 17 PN7 N9 C10 SING N N 18 PN7 S12 C11 SING N N 19 PN7 C10 C11 SING N N 20 PN7 O3 H1 SING N N 21 PN7 C1 H2 SING N N 22 PN7 C1 H3 SING N N 23 PN7 O1P H4 SING N N 24 PN7 CE1 H5 SING N N 25 PN7 CE1 H6 SING N N 26 PN7 CE1 H7 SING N N 27 PN7 CE2 H8 SING N N 28 PN7 CE2 H9 SING N N 29 PN7 CE2 H10 SING N N 30 PN7 C3 H11 SING N N 31 PN7 N5 H12 SING N N 32 PN7 C6 H13 SING N N 33 PN7 C6 H14 SING N N 34 PN7 C7 H15 SING N N 35 PN7 C7 H16 SING N N 36 PN7 N9 H17 SING N N 37 PN7 C10 H18 SING N N 38 PN7 C10 H19 SING N N 39 PN7 C11 H20 SING N N 40 PN7 C11 H21 SING N N 41 PN7 S12 H22 SING N N 42 PN7 P O4P SING N N 43 PN7 O4P H23 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PN7 SMILES ACDLabs 12.01 "OC(C(C)(COP(O)(O)=O)C)C(=O)NCCC(NCCS)=O" PN7 InChI InChI 1.03 "InChI=1S/C11H23N2O7PS/c1-11(2,7-20-21(17,18)19)9(15)10(16)13-4-3-8(14)12-5-6-22/h9,15,22H,3-7H2,1-2H3,(H,12,14)(H,13,16)(H2,17,18,19)/t9-/m1/s1" PN7 InChIKey InChI 1.03 JDMUPRLRUUMCTL-SECBINFHSA-N PN7 SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCS" PN7 SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCS" PN7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCS)O" PN7 SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCS)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PN7 "SYSTEMATIC NAME" ACDLabs 12.01 "N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide" PN7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(3S)-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-4-[[3-oxidanylidene-3-(2-sulfanylethylamino)propyl]amino]butyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PN7 "Create component" 2015-07-16 PDBJ PN7 "Initial release" 2016-01-20 RCSB PN7 "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 PN7 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" O2P CB ? ? 2 PN7 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" O4P CB ? ? 3 PN7 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" P OG ? ? #