data_PN8 # _chem_comp.id PN8 _chem_comp.name "(1~{S},2~{R},3~{R},4~{S},5~{S})-4-[[($l^{5}-azanylidyne-$l^{5}-azanyl)amino]methyl]cyclohexane-1,2,3,5-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H14 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-04-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 204.204 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PN8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 6YTP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PN8 C3 C1 C 0 1 N N S N N N -66.670 -41.748 -5.194 ? ? ? C3 PN8 1 PN8 C2 C2 C 0 1 N N N N N N -66.073 -42.955 -7.371 ? ? ? C2 PN8 2 PN8 C6 C3 C 0 1 N N R N N N -69.199 -40.789 -6.370 ? ? ? C6 PN8 3 PN8 C4 C4 C 0 1 N N N N N N -67.807 -41.240 -4.288 ? ? ? C4 PN8 4 PN8 C1 C5 C 0 1 N N S N N N -67.211 -42.353 -6.512 ? ? ? C1 PN8 5 PN8 O1 O1 O 0 1 N N N N N N -65.759 -40.709 -5.528 ? ? ? O1 PN8 6 PN8 N N1 N 0 1 N N N N N N -65.442 -42.049 -8.330 ? ? ? N PN8 7 PN8 N1 N2 N 1 1 N N N N N N -65.007 -40.755 -8.032 ? ? ? N1 PN8 8 PN8 N2 N3 N 0 1 N N N N N N -64.623 -39.658 -7.863 ? ? ? N2 PN8 9 PN8 C5 C6 C 0 1 N N S N N N -68.603 -40.197 -5.076 ? ? ? C5 PN8 10 PN8 O2 O2 O 0 1 N N N N N N -69.628 -39.607 -4.282 ? ? ? O2 PN8 11 PN8 O3 O3 O 0 1 N N N N N N -69.892 -39.775 -7.091 ? ? ? O3 PN8 12 PN8 C C7 C 0 1 N N R N N N -68.101 -41.348 -7.258 ? ? ? C PN8 13 PN8 O O4 O 0 1 N N N N N N -68.689 -41.951 -8.399 ? ? ? O PN8 14 PN8 H2 H1 H 0 1 N N N N N N -66.136 -42.543 -4.653 ? ? ? H2 PN8 15 PN8 H7 H2 H 0 1 N N N N N N -66.490 -43.803 -7.934 ? ? ? H7 PN8 16 PN8 H6 H3 H 0 1 N N N N N N -65.292 -43.318 -6.687 ? ? ? H6 PN8 17 PN8 H4 H4 H 0 1 N N N N N N -69.888 -41.602 -6.099 ? ? ? H4 PN8 18 PN8 H10 H5 H 0 1 N N N N N N -68.463 -42.077 -4.006 ? ? ? H10 PN8 19 PN8 H9 H6 H 0 1 N N N N N N -67.386 -40.782 -3.381 ? ? ? H9 PN8 20 PN8 H1 H7 H 0 1 N N N N N N -67.861 -43.193 -6.224 ? ? ? H1 PN8 21 PN8 H8 H8 H 0 1 N N N N N N -65.413 -40.322 -4.732 ? ? ? H8 PN8 22 PN8 HN H9 H 0 1 N N N N N N -65.313 -42.379 -9.265 ? ? ? HN PN8 23 PN8 H3 H13 H 0 1 N N N N N N -67.897 -39.409 -5.377 ? ? ? H3 PN8 24 PN8 H11 H14 H 0 1 N N N N N N -69.248 -39.247 -3.489 ? ? ? H11 PN8 25 PN8 H12 H15 H 0 1 N N N N N N -70.583 -39.415 -6.547 ? ? ? H12 PN8 26 PN8 H H16 H 0 1 N N N N N N -67.464 -40.510 -7.578 ? ? ? H PN8 27 PN8 H5 H17 H 0 1 N N N N N N -69.235 -41.316 -8.847 ? ? ? H5 PN8 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PN8 O C SING N N 1 PN8 N N1 SING N N 2 PN8 N C2 SING N N 3 PN8 N1 N2 TRIP N N 4 PN8 C2 C1 SING N N 5 PN8 C C1 SING N N 6 PN8 C C6 SING N N 7 PN8 O3 C6 SING N N 8 PN8 C1 C3 SING N N 9 PN8 C6 C5 SING N N 10 PN8 O1 C3 SING N N 11 PN8 C3 C4 SING N N 12 PN8 C5 C4 SING N N 13 PN8 C5 O2 SING N N 14 PN8 C3 H2 SING N N 15 PN8 C2 H7 SING N N 16 PN8 C2 H6 SING N N 17 PN8 C6 H4 SING N N 18 PN8 C4 H10 SING N N 19 PN8 C4 H9 SING N N 20 PN8 C1 H1 SING N N 21 PN8 O1 H8 SING N N 22 PN8 N HN SING N N 23 PN8 C5 H3 SING N N 24 PN8 O2 H11 SING N N 25 PN8 O3 H12 SING N N 26 PN8 C H SING N N 27 PN8 O H5 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PN8 InChI InChI 1.03 "InChI=1S/C7H14N3O4/c8-10-9-2-3-4(11)1-5(12)7(14)6(3)13/h3-7,9,11-14H,1-2H2/t3-,4-,5-,6+,7+/m0/s1" PN8 InChIKey InChI 1.03 FBFTWYYGVGMNEW-YPPKRKOXSA-N PN8 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C[C@H](O)[C@H](CN[N]#N)[C@@H](O)[C@@H]1O" PN8 SMILES CACTVS 3.385 "O[CH]1C[CH](O)[CH](CN[N]#N)[CH](O)[CH]1O" PN8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O)CN[N]#N)O" PN8 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C(C(C(C1O)O)O)CN[N]#N)O" # _pdbx_chem_comp_identifier.comp_id PN8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{R},3~{R},4~{S},5~{S})-4-[[(azanylidyne-$l^{4}-azanyl)amino]methyl]cyclohexane-1,2,3,5-tetrol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PN8 "Create component" 2020-04-26 PDBE PN8 "Initial release" 2021-05-12 RCSB PN8 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PN8 _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C4 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #