data_PNF
#
_chem_comp.id PNF
_chem_comp.name "6-{4-[HYDROXY-(4-NITRO-PHENOXY)-PHOSPHORYL]-BUTYRYLAMINO}-HEXANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H23 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-09-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 402.336
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PNF
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1YEJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PNF C1 C1 C 0 1 Y N N 11.724 37.652 61.592 0.997 -0.011 -5.138 C1 PNF 1
PNF C2 C2 C 0 1 Y N N 11.595 38.944 61.099 0.646 1.199 -5.733 C2 PNF 2
PNF C3 C3 C 0 1 Y N N 10.383 39.581 61.241 -0.052 1.210 -6.904 C3 PNF 3
PNF C4 C4 C 0 1 Y N N 9.323 38.924 61.867 -0.420 -0.005 -7.512 C4 PNF 4
PNF C5 C5 C 0 1 Y N N 9.494 37.601 62.356 -0.062 -1.224 -6.904 C5 PNF 5
PNF C6 C6 C 0 1 Y N N 10.722 36.936 62.221 0.641 -1.218 -5.736 C6 PNF 6
PNF P1 P1 P 0 1 N N R 14.213 37.527 62.361 0.608 -0.009 -2.785 P1 PNF 7
PNF O1 O1 O 0 1 N N N 12.946 37.045 61.446 1.692 -0.013 -3.975 O1 PNF 8
PNF O2 O2 O 0 1 N N N 14.446 38.926 62.111 -0.308 1.309 -2.899 O2 PNF 9
PNF O3 O3 O 0 1 N N N 13.965 37.092 63.747 -0.244 -1.214 -2.890 O3 PNF 10
PNF C8 C8 C 0 1 N N N 15.510 36.579 61.756 1.469 -0.012 -1.178 C8 PNF 11
PNF C9 C9 C 0 1 N N N 16.065 37.044 60.476 0.439 -0.008 -0.047 C9 PNF 12
PNF C10 C10 C 0 1 N N N 17.270 36.154 60.214 1.162 -0.011 1.300 C10 PNF 13
PNF C11 C11 C 0 1 N N N 17.624 36.077 58.752 0.148 -0.007 2.414 C11 PNF 14
PNF N2 N2 N 0 1 N N N 17.329 34.903 58.052 0.557 -0.009 3.698 N2 PNF 15
PNF O6 O6 O 0 1 N N N 18.167 37.095 58.246 -1.036 -0.002 2.155 O6 PNF 16
PNF C12 C12 C 0 1 N N N 17.590 34.690 56.712 -0.429 -0.004 4.782 C12 PNF 17
PNF C13 C13 C 0 1 N N N 16.589 33.739 56.035 0.293 -0.007 6.130 C13 PNF 18
PNF C14 C14 C 0 1 N N N 17.231 32.921 54.867 -0.736 -0.003 7.261 C14 PNF 19
PNF C15 C15 C 0 1 N N N 17.047 31.385 54.981 -0.013 -0.006 8.609 C15 PNF 20
PNF C16 C16 C 0 1 N N N 16.760 30.638 53.667 -1.043 -0.002 9.741 C16 PNF 21
PNF C17 C17 C 0 1 N N N 15.774 29.452 53.768 -0.331 -0.005 11.069 C17 PNF 22
PNF O7 O7 O 0 1 N N N 15.646 28.879 54.789 0.876 -0.010 11.107 O7 PNF 23
PNF O8 O8 O 0 1 N N N 15.099 29.045 52.837 -1.038 -0.002 12.210 O8 PNF 24
PNF N1 N1 N 1 1 N N N 8.013 39.606 62.026 -1.108 -0.002 -8.662 N1 PNF 25
PNF O4 O4 O 0 1 N N N 7.850 40.794 61.711 -1.425 -1.055 -9.185 O4 PNF 26
PNF O5 O5 O -1 1 N N N 7.062 38.983 62.494 -1.417 1.053 -9.185 O5 PNF 27
PNF H21 1H2 H 0 1 N N N 12.438 39.454 60.604 0.929 2.131 -5.266 H21 PNF 28
PNF H31 1H3 H 0 1 N N N 10.262 40.607 60.856 -0.324 2.149 -7.364 H31 PNF 29
PNF H51 1H5 H 0 1 N N N 8.656 37.079 62.850 -0.341 -2.160 -7.364 H51 PNF 30
PNF H61 1H6 H 0 1 N N N 10.890 35.909 62.588 0.916 -2.152 -5.269 H61 PNF 31
PNF HO21 1HO2 H 0 0 N N N 15.182 39.206 62.642 0.284 2.069 -2.826 HO21 PNF 32
PNF H81 1H8 H 0 1 N N N 16.317 36.494 62.520 2.098 0.874 -1.101 H81 PNF 33
PNF H82 2H8 H 0 1 N N N 15.204 35.509 61.679 2.090 -0.905 -1.101 H82 PNF 34
PNF H91 1H9 H 0 1 N N N 15.324 37.055 59.642 -0.188 -0.896 -0.125 H91 PNF 35
PNF H92 2H9 H 0 1 N N N 16.298 38.134 60.456 -0.181 0.884 -0.125 H92 PNF 36
PNF H101 1H10 H 0 0 N N N 18.146 36.476 60.822 1.791 0.875 1.377 H101 PNF 37
PNF H102 2H10 H 0 0 N N N 17.118 35.136 60.644 1.783 -0.904 1.378 H102 PNF 38
PNF HN21 1HN2 H 0 0 N N N 16.886 34.138 58.561 1.504 -0.013 3.906 HN21 PNF 39
PNF H121 1H12 H 0 0 N N N 17.647 35.658 56.162 -1.057 -0.892 4.704 H121 PNF 40
PNF H122 2H12 H 0 0 N N N 18.635 34.331 56.565 -1.050 0.887 4.704 H122 PNF 41
PNF H131 1H13 H 0 0 N N N 16.111 33.062 56.781 0.922 0.879 6.207 H131 PNF 42
PNF H132 2H13 H 0 0 N N N 15.684 34.291 55.687 0.914 -0.900 6.207 H132 PNF 43
PNF H141 1H14 H 0 0 N N N 16.852 33.285 53.883 -1.364 -0.890 7.184 H141 PNF 44
PNF H142 2H14 H 0 0 N N N 18.311 33.176 54.762 -1.357 0.889 7.184 H142 PNF 45
PNF H151 1H15 H 0 0 N N N 17.933 30.934 55.485 0.615 0.880 8.687 H151 PNF 46
PNF H152 2H15 H 0 0 N N N 16.252 31.154 55.728 0.607 -0.899 8.687 H152 PNF 47
PNF H161 1H16 H 0 0 N N N 16.410 31.357 52.890 -1.671 -0.889 9.663 H161 PNF 48
PNF H162 2H16 H 0 0 N N N 17.717 30.297 53.207 -1.664 0.890 9.663 H162 PNF 49
PNF HO81 1HO8 H 0 0 N N N 14.493 28.316 52.899 -0.581 -0.004 13.062 HO81 PNF 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PNF C1 C2 DOUB Y N 1
PNF C1 C6 SING Y N 2
PNF C1 O1 SING N N 3
PNF C2 C3 SING Y N 4
PNF C2 H21 SING N N 5
PNF C3 C4 DOUB Y N 6
PNF C3 H31 SING N N 7
PNF C4 C5 SING Y N 8
PNF C4 N1 SING N N 9
PNF C5 C6 DOUB Y N 10
PNF C5 H51 SING N N 11
PNF C6 H61 SING N N 12
PNF P1 O1 SING N N 13
PNF P1 O2 SING N N 14
PNF P1 O3 DOUB N N 15
PNF P1 C8 SING N N 16
PNF O2 HO21 SING N N 17
PNF C8 C9 SING N N 18
PNF C8 H81 SING N N 19
PNF C8 H82 SING N N 20
PNF C9 C10 SING N N 21
PNF C9 H91 SING N N 22
PNF C9 H92 SING N N 23
PNF C10 C11 SING N N 24
PNF C10 H101 SING N N 25
PNF C10 H102 SING N N 26
PNF C11 N2 SING N N 27
PNF C11 O6 DOUB N N 28
PNF N2 C12 SING N N 29
PNF N2 HN21 SING N N 30
PNF C12 C13 SING N N 31
PNF C12 H121 SING N N 32
PNF C12 H122 SING N N 33
PNF C13 C14 SING N N 34
PNF C13 H131 SING N N 35
PNF C13 H132 SING N N 36
PNF C14 C15 SING N N 37
PNF C14 H141 SING N N 38
PNF C14 H142 SING N N 39
PNF C15 C16 SING N N 40
PNF C15 H151 SING N N 41
PNF C15 H152 SING N N 42
PNF C16 C17 SING N N 43
PNF C16 H161 SING N N 44
PNF C16 H162 SING N N 45
PNF C17 O7 DOUB N N 46
PNF C17 O8 SING N N 47
PNF O8 HO81 SING N N 48
PNF N1 O4 DOUB N N 49
PNF N1 O5 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PNF SMILES ACDLabs 10.04 "O=P(Oc1ccc(cc1)[N+]([O-])=O)(O)CCCC(=O)NCCCCCC(=O)O"
PNF SMILES_CANONICAL CACTVS 3.341 "OC(=O)CCCCCNC(=O)CCC[P@](O)(=O)Oc1ccc(cc1)[N+]([O-])=O"
PNF SMILES CACTVS 3.341 "OC(=O)CCCCCNC(=O)CCC[P](O)(=O)Oc1ccc(cc1)[N+]([O-])=O"
PNF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])O[P@@](=O)(CCCC(=O)NCCCCCC(=O)O)O"
PNF SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1[N+](=O)[O-])OP(=O)(CCCC(=O)NCCCCCC(=O)O)O"
PNF InChI InChI 1.03 "InChI=1S/C16H23N2O8P/c19-15(17-11-3-1-2-6-16(20)21)5-4-12-27(24,25)26-14-9-7-13(8-10-14)18(22)23/h7-10H,1-6,11-12H2,(H,17,19)(H,20,21)(H,24,25)"
PNF InChIKey InChI 1.03 WYHHVZLGTMCKOR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PNF "SYSTEMATIC NAME" ACDLabs 10.04 "6-({4-[(R)-hydroxy(4-nitrophenoxy)phosphoryl]butanoyl}amino)hexanoic acid"
PNF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "6-[4-[hydroxy-(4-nitrophenoxy)phosphoryl]butanoylamino]hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PNF "Create component" 1999-09-14 RCSB
PNF "Modify descriptor" 2011-06-04 RCSB
#