data_PNP # _chem_comp.id PNP _chem_comp.name "METHYL-PHOSPHONIC ACID MONO-(4-NITRO-PHENYL) ESTER" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H8 N O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "4-NITROPHENYL HYDROGEN METHYLPHOSPHONATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.116 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KNO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNP C1 C1 C 0 1 Y N N 23.444 42.148 5.347 -0.048 -0.810 0.464 C1 PNP 1 PNP C2 C2 C 0 1 Y N N 24.696 42.127 5.805 1.172 -0.682 -0.194 C2 PNP 2 PNP C3 C3 C 0 1 Y N N 25.398 40.946 5.904 1.207 -0.340 -1.514 C3 PNP 3 PNP C4 C4 C 0 1 Y N N 24.846 39.806 5.555 0.004 -0.116 -2.211 C4 PNP 4 PNP C5 C5 C 0 1 Y N N 23.524 39.787 5.081 -1.225 -0.246 -1.538 C5 PNP 5 PNP C6 C6 C 0 1 Y N N 22.832 40.980 4.964 -1.243 -0.594 -0.219 C6 PNP 6 PNP CM CM C 0 1 N N N 21.764 45.695 4.379 -0.061 -0.152 4.397 CM PNP 7 PNP N N N 1 1 N N N 25.578 38.604 5.677 0.030 0.221 -3.508 N PNP 8 PNP O1N O1N O 0 1 N N N 26.702 38.660 6.114 -1.011 0.414 -4.107 O1N PNP 9 PNP O2N O2N O -1 1 N N N 25.101 37.666 5.398 1.096 0.333 -4.087 O2N PNP 10 PNP P P P 0 1 N N R 22.658 44.234 3.977 -0.029 0.222 2.614 P PNP 11 PNP O1P O1P O 0 1 N N N 22.805 43.323 5.285 -0.074 -1.150 1.775 O1P PNP 12 PNP O2P O2P O 0 1 N N N 22.096 43.381 3.205 -1.203 1.053 2.263 O2P PNP 13 PNP O3P O3P O 0 1 N N N 24.030 44.413 3.532 1.320 1.024 2.258 O3P PNP 14 PNP H2 H2 H 0 1 N N N 25.151 43.086 6.102 2.094 -0.855 0.341 H2 PNP 15 PNP H3 H3 H 0 1 N N N 26.436 40.912 6.274 2.154 -0.242 -2.023 H3 PNP 16 PNP H5 H5 H 0 1 N N N 23.031 38.840 4.802 -2.152 -0.075 -2.065 H5 PNP 17 PNP H6 H6 H 0 1 N N N 21.802 40.999 4.569 -2.186 -0.695 0.297 H6 PNP 18 PNP HM1 1HM H 0 1 N N N 21.661 46.329 3.467 -0.030 0.777 4.965 HM1 PNP 19 PNP HM2 2HM H 0 1 N N N 20.778 45.470 4.849 -0.975 -0.695 4.638 HM2 PNP 20 PNP HM3 3HM H 0 1 N N N 22.223 46.249 5.230 0.802 -0.764 4.655 HM3 PNP 21 PNP HOP3 3HOP H 0 0 N N N 24.512 43.624 3.314 2.059 0.449 2.501 HOP3 PNP 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNP C1 C2 DOUB Y N 1 PNP C1 C6 SING Y N 2 PNP C1 O1P SING N N 3 PNP C2 C3 SING Y N 4 PNP C2 H2 SING N N 5 PNP C3 C4 DOUB Y N 6 PNP C3 H3 SING N N 7 PNP C4 C5 SING Y N 8 PNP C4 N SING N N 9 PNP C5 C6 DOUB Y N 10 PNP C5 H5 SING N N 11 PNP C6 H6 SING N N 12 PNP CM P SING N N 13 PNP CM HM1 SING N N 14 PNP CM HM2 SING N N 15 PNP CM HM3 SING N N 16 PNP N O1N DOUB N N 17 PNP N O2N SING N N 18 PNP P O1P SING N N 19 PNP P O2P DOUB N N 20 PNP P O3P SING N N 21 PNP O3P HOP3 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNP SMILES ACDLabs 10.04 "O=P(Oc1ccc(cc1)[N+]([O-])=O)(O)C" PNP SMILES_CANONICAL CACTVS 3.341 "C[P@](O)(=O)Oc1ccc(cc1)[N+]([O-])=O" PNP SMILES CACTVS 3.341 "C[P](O)(=O)Oc1ccc(cc1)[N+]([O-])=O" PNP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[P@@](=O)(O)Oc1ccc(cc1)[N+](=O)[O-]" PNP SMILES "OpenEye OEToolkits" 1.5.0 "CP(=O)(O)Oc1ccc(cc1)[N+](=O)[O-]" PNP InChI InChI 1.03 "InChI=1S/C7H8NO5P/c1-14(11,12)13-7-4-2-6(3-5-7)8(9)10/h2-5H,1H3,(H,11,12)" PNP InChIKey InChI 1.03 VJPXTXIEAOSJBR-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PNP "SYSTEMATIC NAME" ACDLabs 10.04 "4-nitrophenyl hydrogen (R)-methylphosphonate" PNP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "methyl-(4-nitrophenoxy)phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNP "Create component" 1999-07-08 EBI PNP "Modify descriptor" 2011-06-04 RCSB PNP "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id PNP _pdbx_chem_comp_synonyms.name "4-NITROPHENYL HYDROGEN METHYLPHOSPHONATE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##