data_PNT # _chem_comp.id PNT _chem_comp.name "1,5-BIS(4-AMIDINOPHENOXY)PENTANE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C19 H24 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1D64 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNT C1 C1 C 0 1 Y N N 8.015 20.256 12.890 -4.867 -0.776 -0.008 C1 PNT 1 PNT C2 C2 C 0 1 Y N N 9.314 19.968 12.659 -6.041 -1.519 -0.011 C2 PNT 2 PNT C3 C3 C 0 1 Y N N 10.045 19.340 13.643 -7.262 -0.881 -0.006 C3 PNT 3 PNT C4 C4 C 0 1 Y N N 9.470 18.916 14.839 -7.319 0.513 0.001 C4 PNT 4 PNT C5 C5 C 0 1 Y N N 8.144 19.196 15.024 -6.138 1.257 0.003 C5 PNT 5 PNT C6 C6 C 0 1 Y N N 7.416 19.828 14.086 -4.920 0.612 -0.001 C6 PNT 6 PNT C7 C7 C 0 1 N N N 8.364 21.636 11.159 -2.499 -0.583 -0.004 C7 PNT 7 PNT C8 C8 C 0 1 N N N 7.387 22.136 10.109 -1.249 -1.466 -0.003 C8 PNT 8 PNT C9 C9 C 0 1 N N N 10.177 18.280 15.804 -8.628 1.202 0.005 C9 PNT 9 PNT C10 C10 C 0 1 N N N 8.461 22.380 9.091 -0.000 -0.583 -0.001 C10 PNT 10 PNT "C1'" "C1'" C 0 1 Y N N 9.529 24.644 5.028 4.867 -0.776 0.007 "C1'" PNT 11 PNT "C2'" "C2'" C 0 1 Y N N 10.557 23.800 4.883 6.041 -1.519 0.008 "C2'" PNT 12 PNT "C3'" "C3'" C 0 1 Y N N 11.412 23.992 3.832 7.262 -0.881 0.004 "C3'" PNT 13 PNT "C4'" "C4'" C 0 1 Y N N 11.252 25.036 2.927 7.319 0.513 0.000 "C4'" PNT 14 PNT "C5'" "C5'" C 0 1 Y N N 10.223 25.880 3.092 6.138 1.257 -0.001 "C5'" PNT 15 PNT "C6'" "C6'" C 0 1 Y N N 9.346 25.688 4.136 4.920 0.612 0.002 "C6'" PNT 16 PNT "C7'" "C7'" C 0 1 N N N 9.192 23.540 6.997 2.499 -0.583 0.003 "C7'" PNT 17 PNT "C8'" "C8'" C 0 1 N N N 8.093 23.404 8.061 1.249 -1.466 0.000 "C8'" PNT 18 PNT "C9'" "C9'" C 0 1 N N N 12.117 25.232 1.909 8.628 1.202 -0.003 "C9'" PNT 19 PNT O1 O1 O 0 1 N N N 7.362 20.928 11.992 -3.665 -1.408 -0.007 O1 PNT 20 PNT "O1'" "O1'" O 0 1 N N N 8.683 24.468 5.993 3.665 -1.408 0.004 "O1'" PNT 21 PNT N1 N1 N 0 1 N N N 11.515 18.168 15.665 -9.730 0.506 0.002 N1 PNT 22 PNT N2 N2 N 0 1 N N N 9.577 17.848 16.967 -8.683 2.579 0.012 N2 PNT 23 PNT "N1'" "N1'" N 0 1 N N N 13.228 24.464 1.830 9.730 0.506 -0.002 "N1'" PNT 24 PNT "N2'" "N2'" N 0 1 N N N 11.893 26.224 0.971 8.683 2.579 -0.007 "N2'" PNT 25 PNT H2 H2 H 0 1 N N N 9.773 20.226 11.716 -5.996 -2.598 -0.017 H2 PNT 26 PNT H3 H3 H 0 1 N N N 11.099 19.171 13.482 -8.174 -1.460 -0.009 H3 PNT 27 PNT H5 H5 H 0 1 N N N 7.669 18.902 15.948 -6.178 2.336 0.009 H5 PNT 28 PNT H6 H6 H 0 1 N N N 6.364 20.007 14.254 -4.006 1.187 0.001 H6 PNT 29 PNT H71 H71 H 0 1 N N N 9.157 20.986 10.761 -2.500 0.046 0.886 H71 PNT 30 PNT H72 H72 H 0 1 N N N 8.979 22.396 11.664 -2.497 0.047 -0.894 H72 PNT 31 PNT H81 H81 H 0 1 N N N 6.613 21.414 9.809 -1.251 -2.096 0.886 H81 PNT 32 PNT H82 H82 H 0 1 N N N 6.721 22.971 10.373 -1.248 -2.095 -0.894 H82 PNT 33 PNT H101 H101 H 0 0 N N N 9.358 22.734 9.619 0.001 0.047 -0.890 H101 PNT 34 PNT H102 H102 H 0 0 N N N 8.625 21.431 8.560 -0.001 0.046 0.890 H102 PNT 35 PNT "H2'" "H2'" H 0 1 N N N 10.708 22.987 5.578 5.996 -2.598 0.011 "H2'" PNT 36 PNT "H3'" "H3'" H 0 1 N N N 12.239 23.310 3.701 8.174 -1.460 0.006 "H3'" PNT 37 PNT "H5'" "H5'" H 0 1 N N N 10.083 26.706 2.410 6.178 2.336 -0.004 "H5'" PNT 38 PNT "H6'" "H6'" H 0 1 N N N 8.508 26.357 4.261 4.006 1.187 0.001 "H6'" PNT 39 PNT "H7'1" "H7'1" H 0 0 N N N 10.117 23.929 7.447 2.500 0.047 -0.886 "H7'1" PNT 40 PNT "H7'2" "H7'2" H 0 0 N N N 9.434 22.565 6.549 2.497 0.046 0.894 "H7'2" PNT 41 PNT "H8'1" "H8'1" H 0 0 N N N 7.158 23.096 7.570 1.248 -2.096 0.890 "H8'1" PNT 42 PNT "H8'2" "H8'2" H 0 0 N N N 7.970 24.375 8.562 1.251 -2.095 -0.890 "H8'2" PNT 43 PNT HN1 HN1 H 0 1 N N N 11.898 17.679 16.449 -10.589 0.957 0.005 HN1 PNT 44 PNT HN2 HN2 H 0 1 N N N 8.596 18.037 16.934 -7.863 3.097 0.014 HN2 PNT 45 PNT HN3 HN3 H 0 1 N N N 10.052 17.411 17.730 -9.541 3.030 0.015 HN3 PNT 46 PNT "HN'1" "HN'1" H 0 0 N N N 13.766 24.725 1.029 10.589 0.957 -0.003 "HN'1" PNT 47 PNT "HN'2" "HN'2" H 0 0 N N N 11.040 26.703 1.179 7.863 3.097 -0.008 "HN'2" PNT 48 PNT "HN'3" "HN'3" H 0 0 N N N 12.495 26.431 0.200 9.541 3.030 -0.009 "HN'3" PNT 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNT C1 C2 DOUB Y N 1 PNT C1 C6 SING Y N 2 PNT C1 O1 SING N N 3 PNT C2 C3 SING Y N 4 PNT C2 H2 SING N N 5 PNT C3 C4 DOUB Y N 6 PNT C3 H3 SING N N 7 PNT C4 C5 SING Y N 8 PNT C4 C9 SING N N 9 PNT C5 C6 DOUB Y N 10 PNT C5 H5 SING N N 11 PNT C6 H6 SING N N 12 PNT C7 C8 SING N N 13 PNT C7 O1 SING N N 14 PNT C7 H71 SING N N 15 PNT C7 H72 SING N N 16 PNT C8 C10 SING N N 17 PNT C8 H81 SING N N 18 PNT C8 H82 SING N N 19 PNT C9 N1 DOUB N N 20 PNT C9 N2 SING N N 21 PNT C10 "C8'" SING N N 22 PNT C10 H101 SING N N 23 PNT C10 H102 SING N N 24 PNT "C1'" "C2'" DOUB Y N 25 PNT "C1'" "C6'" SING Y N 26 PNT "C1'" "O1'" SING N N 27 PNT "C2'" "C3'" SING Y N 28 PNT "C2'" "H2'" SING N N 29 PNT "C3'" "C4'" DOUB Y N 30 PNT "C3'" "H3'" SING N N 31 PNT "C4'" "C5'" SING Y N 32 PNT "C4'" "C9'" SING N N 33 PNT "C5'" "C6'" DOUB Y N 34 PNT "C5'" "H5'" SING N N 35 PNT "C6'" "H6'" SING N N 36 PNT "C7'" "C8'" SING N N 37 PNT "C7'" "O1'" SING N N 38 PNT "C7'" "H7'1" SING N N 39 PNT "C7'" "H7'2" SING N N 40 PNT "C8'" "H8'1" SING N N 41 PNT "C8'" "H8'2" SING N N 42 PNT "C9'" "N1'" DOUB N N 43 PNT "C9'" "N2'" SING N N 44 PNT N1 HN1 SING N N 45 PNT N2 HN2 SING N N 46 PNT N2 HN3 SING N N 47 PNT "N1'" "HN'1" SING N N 48 PNT "N2'" "HN'2" SING N N 49 PNT "N2'" "HN'3" SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNT SMILES ACDLabs 10.04 "O(c1ccc(cc1)C(=[N@H])N)CCCCCOc2ccc(C(=[N@H])N)cc2" PNT SMILES_CANONICAL CACTVS 3.341 "NC(=N)c1ccc(OCCCCCOc2ccc(cc2)C(N)=N)cc1" PNT SMILES CACTVS 3.341 "NC(=N)c1ccc(OCCCCCOc2ccc(cc2)C(N)=N)cc1" PNT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)OCCCCCOc2ccc(cc2)C(=N)N" PNT SMILES "OpenEye OEToolkits" 1.5.0 "c1cc(ccc1C(=N)N)OCCCCCOc2ccc(cc2)C(=N)N" PNT InChI InChI 1.03 "InChI=1S/C19H24N4O2/c20-18(21)14-4-8-16(9-5-14)24-12-2-1-3-13-25-17-10-6-15(7-11-17)19(22)23/h4-11H,1-3,12-13H2,(H3,20,21)(H3,22,23)" PNT InChIKey InChI 1.03 XDRYMKDFEDOLFX-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PNT "SYSTEMATIC NAME" ACDLabs 10.04 "4,4'-[pentane-1,5-diylbis(oxy)]dibenzenecarboximidamide" PNT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[5-(4-carbamimidoylphenoxy)pentoxy]benzenecarboximidamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNT "Create component" 1999-07-08 EBI PNT "Modify descriptor" 2011-06-04 RCSB #