data_PNW # _chem_comp.id PNW _chem_comp.name "4-nitrophenyl beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H15 N O8" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms ;4'-NITROPHENYL-BETA-D-GLUCOPYRANOSIDE; 4-nitrophenyl beta-D-glucoside; 4-nitrophenyl D-glucoside; 4-nitrophenyl glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-25 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 301.249 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PNW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3AI0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PNW "4'-NITROPHENYL-BETA-D-GLUCOPYRANOSIDE" PDB ? 2 PNW "4-nitrophenyl beta-D-glucoside" PDB ? 3 PNW "4-nitrophenyl D-glucoside" PDB ? 4 PNW "4-nitrophenyl glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PNW C1 C1 C 0 1 N N S -26.927 82.102 14.623 1.144 0.790 -0.106 C1 PNW 1 PNW N1 N1 N 1 1 N N N -22.600 83.764 10.169 -5.126 -0.394 -0.276 N1 PNW 2 PNW O1 O1 O 0 1 N N N -27.028 82.587 13.292 0.081 1.537 0.489 O1 PNW 3 PNW C2 C2 C 0 1 N N R -28.340 82.186 15.195 2.467 1.531 0.102 C2 PNW 4 PNW O2 O2 O 0 1 N N N -28.650 83.537 15.554 2.414 2.798 -0.557 O2 PNW 5 PNW C3 C3 C 0 1 N N S -28.566 81.298 16.415 3.609 0.696 -0.485 C3 PNW 6 PNW O3 O3 O 0 1 N N N -29.989 81.203 16.577 4.856 1.345 -0.230 O3 PNW 7 PNW C4 C4 C 0 1 N N S -27.970 79.920 16.117 3.607 -0.687 0.174 C4 PNW 8 PNW O4 O4 O 0 1 N N N -28.112 79.130 17.303 4.622 -1.500 -0.418 O4 PNW 9 PNW C5 C5 C 0 1 N N R -26.491 80.104 15.761 2.239 -1.342 -0.037 C5 PNW 10 PNW O5 O5 O 0 1 N N N -26.495 80.742 14.483 1.220 -0.500 0.505 O5 PNW 11 PNW C6 C6 C 0 1 N N N -25.724 78.794 15.573 2.209 -2.699 0.670 C6 PNW 12 PNW O6 O6 O 0 1 N N N -26.364 77.880 14.675 0.977 -3.361 0.377 O6 PNW 13 PNW C7 C7 C 0 1 Y N N -25.897 82.836 12.561 -1.182 1.069 0.303 C7 PNW 14 PNW O7 O7 O 0 1 N N N -22.783 84.337 9.103 -6.073 0.200 0.207 O7 PNW 15 PNW C8 C8 C 0 1 Y N N -26.082 83.411 11.306 -2.261 1.745 0.853 C8 PNW 16 PNW O8 O8 O -1 1 N N N -21.468 83.486 10.528 -5.310 -1.408 -0.926 O8 PNW 17 PNW C9 C9 C 0 1 Y N N -24.984 83.755 10.524 -3.543 1.267 0.663 C9 PNW 18 PNW C10 C10 C 0 1 Y N N -23.701 83.443 10.983 -3.751 0.116 -0.074 C10 PNW 19 PNW C11 C11 C 0 1 Y N N -23.517 82.893 12.256 -2.677 -0.560 -0.623 C11 PNW 20 PNW C12 C12 C 0 1 Y N N -24.616 82.564 13.052 -1.393 -0.083 -0.441 C12 PNW 21 PNW H1 H1 H 0 1 N N N -26.236 82.651 15.279 0.955 0.676 -1.173 H1 PNW 22 PNW H2 H2 H 0 1 N N N -29.003 81.823 14.396 2.636 1.682 1.168 H2 PNW 23 PNW HO2 HO2 H 0 1 N Y N -29.531 83.577 15.908 1.709 3.378 -0.238 HO2 PNW 24 PNW H3 H3 H 0 1 N N N -28.096 81.696 17.327 3.466 0.589 -1.561 H3 PNW 25 PNW HO3 HO3 H 0 1 N Y N -30.187 80.657 17.329 4.924 2.230 -0.614 HO3 PNW 26 PNW H4 H4 H 0 1 N N N -28.476 79.422 15.277 3.800 -0.582 1.242 H4 PNW 27 PNW HO4 HO4 H 0 1 N Y N -27.751 78.264 17.153 5.516 -1.142 -0.326 HO4 PNW 28 PNW H5 H5 H 0 1 N N N -26.005 80.656 16.579 2.065 -1.484 -1.103 H5 PNW 29 PNW H61 H6 H 0 1 N N N -24.731 79.034 15.166 3.042 -3.309 0.321 H61 PNW 30 PNW H62 H6A H 0 1 N N N -25.636 78.305 16.554 2.294 -2.549 1.747 H62 PNW 31 PNW HO6 HO6 H 0 1 N Y N -25.841 77.090 14.601 0.889 -4.229 0.794 HO6 PNW 32 PNW H8 H8 H 0 1 N N N -27.082 83.590 10.939 -2.099 2.644 1.430 H8 PNW 33 PNW H9 H9 H 0 1 N N N -25.121 84.255 9.577 -4.384 1.792 1.091 H9 PNW 34 PNW H11 H11 H 0 1 N N N -22.517 82.721 12.626 -2.842 -1.459 -1.198 H11 PNW 35 PNW H12 H12 H 0 1 N N N -24.480 82.111 14.023 -0.555 -0.608 -0.874 H12 PNW 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PNW C1 O1 SING N N 1 PNW C1 C2 SING N N 2 PNW C1 O5 SING N N 3 PNW N1 O7 DOUB N N 4 PNW N1 O8 SING N N 5 PNW N1 C10 SING N N 6 PNW O1 C7 SING N N 7 PNW C2 O2 SING N N 8 PNW C2 C3 SING N N 9 PNW C3 O3 SING N N 10 PNW C3 C4 SING N N 11 PNW C4 O4 SING N N 12 PNW C4 C5 SING N N 13 PNW C5 O5 SING N N 14 PNW C5 C6 SING N N 15 PNW C6 O6 SING N N 16 PNW C7 C8 DOUB Y N 17 PNW C7 C12 SING Y N 18 PNW C8 C9 SING Y N 19 PNW C9 C10 DOUB Y N 20 PNW C10 C11 SING Y N 21 PNW C11 C12 DOUB Y N 22 PNW C1 H1 SING N N 23 PNW C2 H2 SING N N 24 PNW O2 HO2 SING N N 25 PNW C3 H3 SING N N 26 PNW O3 HO3 SING N N 27 PNW C4 H4 SING N N 28 PNW O4 HO4 SING N N 29 PNW C5 H5 SING N N 30 PNW C6 H61 SING N N 31 PNW C6 H62 SING N N 32 PNW O6 HO6 SING N N 33 PNW C8 H8 SING N N 34 PNW C9 H9 SING N N 35 PNW C11 H11 SING N N 36 PNW C12 H12 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PNW SMILES ACDLabs 12.01 "[O-][N+](=O)c2ccc(OC1OC(C(O)C(O)C1O)CO)cc2" PNW SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@@H](Oc2ccc(cc2)[N+]([O-])=O)[C@H](O)[C@@H](O)[C@@H]1O" PNW SMILES CACTVS 3.370 "OC[CH]1O[CH](Oc2ccc(cc2)[N+]([O-])=O)[CH](O)[CH](O)[CH]1O" PNW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1[N+](=O)[O-])O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" PNW SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1[N+](=O)[O-])OC2C(C(C(C(O2)CO)O)O)O" PNW InChI InChI 1.03 "InChI=1S/C12H15NO8/c14-5-8-9(15)10(16)11(17)12(21-8)20-7-3-1-6(2-4-7)13(18)19/h1-4,8-12,14-17H,5H2/t8-,9-,10+,11-,12-/m1/s1" PNW InChIKey InChI 1.03 IFBHRQDFSNCLOZ-RMPHRYRLSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PNW "SYSTEMATIC NAME" ACDLabs 12.01 "4-nitrophenyl beta-D-glucopyranoside" PNW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3S,4S,5R,6S)-2-(hydroxymethyl)-6-(4-nitrophenoxy)oxane-3,4,5-triol" PNW "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "4'-nitrophenyl-b-D-glucopyranoside" # _pdbx_chem_comp_related.comp_id PNW _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 PNW C1 BGC C1 "Carbohydrate core" 2 PNW C2 BGC C2 "Carbohydrate core" 3 PNW C3 BGC C3 "Carbohydrate core" 4 PNW C4 BGC C4 "Carbohydrate core" 5 PNW C5 BGC C5 "Carbohydrate core" 6 PNW C6 BGC C6 "Carbohydrate core" 7 PNW O1 BGC O1 "Carbohydrate core" 8 PNW O2 BGC O2 "Carbohydrate core" 9 PNW O3 BGC O3 "Carbohydrate core" 10 PNW O4 BGC O4 "Carbohydrate core" 11 PNW O5 BGC O5 "Carbohydrate core" 12 PNW O6 BGC O6 "Carbohydrate core" 13 PNW H1 BGC H1 "Carbohydrate core" 14 PNW H2 BGC H2 "Carbohydrate core" 15 PNW H3 BGC H3 "Carbohydrate core" 16 PNW H4 BGC H4 "Carbohydrate core" 17 PNW H5 BGC H5 "Carbohydrate core" 18 PNW H61 BGC H61 "Carbohydrate core" 19 PNW H62 BGC H62 "Carbohydrate core" 20 PNW HO2 BGC HO2 "Carbohydrate core" 21 PNW HO3 BGC HO3 "Carbohydrate core" 22 PNW HO4 BGC HO4 "Carbohydrate core" 23 PNW HO6 BGC HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support PNW "CARBOHYDRATE ISOMER" D PDB ? PNW "CARBOHYDRATE RING" pyranose PDB ? PNW "CARBOHYDRATE ANOMER" beta PDB ? PNW "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PNW "Create component" 2010-05-25 PDBJ PNW "Modify aromatic_flag" 2011-06-04 RCSB PNW "Modify descriptor" 2011-06-04 RCSB PNW "Other modification" 2020-07-03 RCSB PNW "Modify parent residue" 2020-07-17 RCSB PNW "Modify synonyms" 2020-07-17 RCSB PNW "Modify atom id" 2020-07-17 RCSB PNW "Modify component atom id" 2020-07-17 RCSB PNW "Modify leaving atom flag" 2020-07-17 RCSB ##