data_PO8 # _chem_comp.id PO8 _chem_comp.name "(1~{R},2~{S},3~{S},4~{S},5~{R},6~{R})-5-azanyl-6-(hydroxymethyl)cyclohexane-1,2,3,4-tetrol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H16 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2020-04-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PO8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YTR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PO8 C1 C1 C 0 1 N N S N N N -42.682 -39.666 -7.568 1.228 1.368 -0.229 C1 PO8 1 PO8 C2 C2 C 0 1 N N S N N N -41.898 -40.785 -8.283 1.717 0.055 0.386 C2 PO8 2 PO8 C3 C3 C 0 1 N N S N N N -41.771 -40.493 -9.772 0.853 -1.100 -0.125 C3 PO8 3 PO8 C4 C4 C 0 1 N N R N N N -43.118 -40.213 -10.420 -0.605 -0.861 0.274 C4 PO8 4 PO8 C5 C5 C 0 1 N N R N N N -43.944 -39.150 -9.700 -1.094 0.452 -0.340 C5 PO8 5 PO8 C6 C6 C 0 1 N N N N N N -45.295 -38.880 -10.392 -2.551 0.691 0.059 C6 PO8 6 PO8 C7 C7 C 0 1 N N R N N N -44.064 -39.449 -8.203 -0.229 1.607 0.170 C7 PO8 7 PO8 O8 O1 O 0 1 N N N N N N -40.580 -40.997 -7.735 3.078 -0.168 0.013 O8 PO8 8 PO8 O9 O2 O 0 1 N N N N N N -41.194 -41.618 -10.441 1.309 -2.326 0.449 O9 PO8 9 PO8 O10 O3 O 0 1 N N N N N N -42.852 -39.750 -11.734 -1.412 -1.940 -0.202 O10 PO8 10 PO8 O11 O4 O 0 1 N N N N N N -46.210 -39.988 -10.458 -3.375 -0.325 -0.516 O11 PO8 11 PO8 N12 N1 N 1 1 N N N N N N -44.948 -40.618 -7.925 -0.330 1.684 1.633 N12 PO8 12 PO8 O1 O5 O 0 1 N Y N N N N -41.967 -38.418 -7.596 1.326 1.293 -1.653 O1 PO8 13 PO8 H11 H1 H 0 1 N N N N N N -42.833 -39.974 -6.523 1.844 2.191 0.134 H11 PO8 14 PO8 H2 H2 H 0 1 N N N N N N -42.477 -41.714 -8.174 1.642 0.112 1.472 H2 PO8 15 PO8 H3 H3 H 0 1 N N N N N N -41.128 -39.610 -9.903 0.927 -1.157 -1.211 H3 PO8 16 PO8 H4 H4 H 0 1 N N N N N N -43.697 -41.148 -10.455 -0.680 -0.804 1.360 H4 PO8 17 PO8 H5 H5 H 0 1 N N N N N N -43.372 -38.214 -9.778 -1.019 0.395 -1.426 H5 PO8 18 PO8 H61 H6 H 0 1 N N N N N N -45.085 -38.557 -11.422 -2.640 0.660 1.145 H61 PO8 19 PO8 H6 H7 H 0 1 N N N N N N -45.794 -38.065 -9.847 -2.872 1.667 -0.304 H6 PO8 20 PO8 H7 H8 H 0 1 N N N N N N -44.511 -38.565 -7.725 -0.577 2.542 -0.268 H7 PO8 21 PO8 HO8 H9 H 0 1 N N N N N N -40.649 -41.180 -6.805 3.455 -0.985 0.368 HO8 PO8 22 PO8 HO9 H10 H 0 1 N N N N N N -40.349 -41.817 -10.056 2.227 -2.542 0.238 HO9 PO8 23 PO8 HO10 H11 H 0 0 N N N N N N -43.672 -39.562 -12.176 -1.159 -2.805 0.147 HO10 PO8 24 PO8 HO11 H12 H 0 0 N N N N N N -47.006 -39.716 -10.901 -4.314 -0.237 -0.305 HO11 PO8 25 PO8 HN11 H13 H 0 0 N N N N N N -44.995 -40.774 -6.938 -0.008 0.818 2.039 HN11 PO8 26 PO8 HN13 H14 H 0 0 N N N N N N -45.865 -40.433 -8.277 0.240 2.445 1.970 HN13 PO8 27 PO8 H1 H16 H 0 1 N N N N N N -42.475 -37.751 -7.149 2.224 1.142 -1.978 H1 PO8 28 PO8 HN12 HN12 H 0 0 N N N N N N -44.576 -41.431 -8.373 -1.291 1.841 1.897 HN12 PO8 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PO8 O10 C4 SING N N 1 PO8 O11 C6 SING N N 2 PO8 O9 C3 SING N N 3 PO8 C4 C3 SING N N 4 PO8 C4 C5 SING N N 5 PO8 C6 C5 SING N N 6 PO8 C3 C2 SING N N 7 PO8 C5 C7 SING N N 8 PO8 C2 O8 SING N N 9 PO8 C2 C1 SING N N 10 PO8 C7 N12 SING N N 11 PO8 C7 C1 SING N N 12 PO8 C1 O1 SING N N 13 PO8 C1 H11 SING N N 14 PO8 C2 H2 SING N N 15 PO8 C3 H3 SING N N 16 PO8 C4 H4 SING N N 17 PO8 C5 H5 SING N N 18 PO8 C6 H61 SING N N 19 PO8 C6 H6 SING N N 20 PO8 C7 H7 SING N N 21 PO8 O8 HO8 SING N N 22 PO8 O9 HO9 SING N N 23 PO8 O10 HO10 SING N N 24 PO8 O11 HO11 SING N N 25 PO8 N12 HN11 SING N N 26 PO8 N12 HN13 SING N N 27 PO8 O1 H1 SING N N 28 PO8 HN12 N12 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PO8 InChI InChI 1.03 "InChI=1S/C7H15NO5/c8-3-2(1-9)4(10)6(12)7(13)5(3)11/h2-7,9-13H,1,8H2/p+1/t2-,3+,4+,5-,6-,7-/m0/s1" PO8 InChIKey InChI 1.03 SWVTZDDSAFUTKS-ARYBSUEZSA-O PO8 SMILES_CANONICAL CACTVS 3.385 "[NH3+][C@H]1[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO" PO8 SMILES CACTVS 3.385 "[NH3+][CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1CO" PO8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@H]([C@@H]([C@@H]([C@H]([C@@H]1O)O)O)O)[NH3+])O" PO8 SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1O)O)O)O)[NH3+])O" # _pdbx_chem_comp_identifier.comp_id PO8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{R},3~{R},4~{S},5~{S},6~{S})-2-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)cyclohexyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PO8 "Create component" 2020-04-26 PDBE PO8 "Modify atom id" 2020-04-26 PDBE PO8 "Initial release" 2021-05-12 RCSB PO8 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id PO8 _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #