data_POD # _chem_comp.id POD _chem_comp.name "9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9-TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-6(5AH)-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H22 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms PODOPHYLLOTOXIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-03-04 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code POD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1SA1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal POD O5 O5 O 0 1 N N N 115.817 88.087 9.521 -2.614 -1.787 2.116 O5 POD 1 POD C13 C13 C 0 1 N N N 116.759 88.776 9.288 -2.808 -0.884 1.336 C13 POD 2 POD O4 O4 O 0 1 N N N 117.856 89.097 10.154 -3.582 0.216 1.564 O4 POD 3 POD C10 C10 C 0 1 N N R 116.860 89.602 8.132 -2.226 -0.754 -0.039 C10 POD 4 POD C9 C9 C 0 1 N N R 118.162 90.326 8.185 -2.194 0.793 -0.246 C9 POD 5 POD C12 C12 C 0 1 N N N 118.758 90.063 9.574 -3.535 1.137 0.420 C12 POD 6 POD C11 C11 C 0 1 N N R 115.834 89.541 7.111 -0.800 -1.232 -0.224 C11 POD 7 POD C5 C5 C 0 1 Y N N 116.034 90.758 6.281 -0.324 -0.766 -1.589 C5 POD 8 POD C6 C6 C 0 1 Y N N 117.120 91.593 6.378 -0.926 0.247 -2.276 C6 POD 9 POD C8 C8 C 0 1 N N R 118.301 91.595 7.350 -2.132 1.003 -1.747 C8 POD 10 POD O3 O3 O 0 1 N N N 119.602 91.654 6.717 -1.994 2.397 -2.034 O3 POD 11 POD C7 C7 C 0 1 Y N N 116.936 92.433 5.495 -0.462 0.637 -3.534 C7 POD 12 POD C2 C2 C 0 1 Y N N 116.246 92.860 4.588 0.642 -0.017 -4.051 C2 POD 13 POD C3 C3 C 0 1 Y N N 115.213 92.086 4.479 1.274 -1.041 -3.329 C3 POD 14 POD C4 C4 C 0 1 Y N N 115.082 91.022 5.325 0.805 -1.426 -2.085 C4 POD 15 POD O2 O2 O 0 1 N N N 116.249 93.936 3.642 1.291 0.153 -5.225 O2 POD 16 POD C1 C1 C 0 1 N N N 115.044 93.761 2.862 2.094 -1.033 -5.398 C1 POD 17 POD O1 O1 O 0 1 N N N 114.392 92.589 3.399 2.319 -1.504 -4.053 O1 POD 18 POD C14 C14 C 0 1 Y N N 116.033 88.288 6.364 0.076 -0.644 0.850 C14 POD 19 POD C15 C15 C 0 1 Y N N 115.267 87.207 6.729 0.312 -1.353 2.013 C15 POD 20 POD C16 C16 C 0 1 Y N N 115.341 85.983 6.067 1.119 -0.816 3.004 C16 POD 21 POD O6 O6 O 0 1 N N N 114.572 84.905 6.410 1.351 -1.515 4.147 O6 POD 22 POD C20 C20 C 0 1 N N N 114.683 84.133 7.600 0.636 -2.747 4.030 C20 POD 23 POD C17 C17 C 0 1 Y N N 116.189 85.821 5.025 1.687 0.440 2.830 C17 POD 24 POD O7 O7 O 0 1 N N N 116.239 84.614 4.394 2.480 0.971 3.800 O7 POD 25 POD C21 C21 C 0 1 N N N 115.209 83.638 4.238 1.625 1.718 4.668 C21 POD 26 POD C18 C18 C 0 1 Y N N 116.958 86.884 4.652 1.452 1.148 1.657 C18 POD 27 POD C19 C19 C 0 1 Y N N 116.898 88.119 5.302 0.644 0.603 0.671 C19 POD 28 POD O8 O8 O 0 1 N N N 117.784 86.680 3.607 2.009 2.375 1.480 O8 POD 29 POD C22 C22 C 0 1 N N N 117.422 87.296 2.370 1.581 2.842 0.198 C22 POD 30 POD H10 H10 H 0 1 N N N 116.378 90.297 7.405 -2.880 -1.224 -0.774 H10 POD 31 POD H9 H9 H 0 1 N N N 118.978 89.963 7.517 -1.353 1.262 0.264 H9 POD 32 POD H121 1H12 H 0 0 N N N 118.911 90.979 10.190 -3.543 2.173 0.759 H121 POD 33 POD H122 2H12 H 0 0 N N N 119.827 89.747 9.564 -4.365 0.948 -0.261 H122 POD 34 POD H11 H11 H 0 1 N N N 114.788 89.530 7.497 -0.766 -2.320 -0.173 H11 POD 35 POD H8 H8 H 0 1 N N N 118.259 92.523 7.965 -3.041 0.620 -2.211 H8 POD 36 POD HO3 HO3 H 0 1 N N N 119.688 92.444 6.197 -1.959 2.481 -2.996 HO3 POD 37 POD H7 H7 H 0 1 N N N 117.789 93.130 5.535 -0.950 1.425 -4.088 H7 POD 38 POD H4 H4 H 0 1 N N N 114.197 90.368 5.235 1.287 -2.217 -1.528 H4 POD 39 POD H11A 1H1 H 0 0 N N N 114.390 94.664 2.842 1.551 -1.779 -5.978 H11A POD 40 POD H12 2H1 H 0 1 N N N 115.228 93.704 1.763 3.040 -0.787 -5.880 H12 POD 41 POD H15 H15 H 0 1 N N N 114.572 87.325 7.577 -0.132 -2.328 2.149 H15 POD 42 POD H201 1H20 H 0 0 N N N 114.056 83.254 7.879 0.792 -3.345 4.928 H201 POD 43 POD H202 2H20 H 0 0 N N N 115.742 83.789 7.651 -0.427 -2.540 3.912 H202 POD 44 POD H203 3H20 H 0 0 N N N 114.606 84.853 8.447 0.998 -3.296 3.160 H203 POD 45 POD H211 1H21 H 0 0 N N N 115.249 82.650 3.721 2.218 2.165 5.466 H211 POD 46 POD H212 2H21 H 0 0 N N N 114.851 83.417 5.270 1.129 2.505 4.100 H212 POD 47 POD H213 3H21 H 0 0 N N N 114.355 84.181 3.770 0.876 1.055 5.100 H213 POD 48 POD H19 H19 H 0 1 N N N 117.533 88.960 4.976 0.457 1.154 -0.238 H19 POD 49 POD H221 1H22 H 0 0 N N N 118.105 87.127 1.505 2.005 3.829 0.011 H221 POD 50 POD H222 2H22 H 0 0 N N N 116.385 86.992 2.091 1.919 2.149 -0.571 H222 POD 51 POD H223 3H22 H 0 0 N N N 117.280 88.391 2.525 0.493 2.905 0.179 H223 POD 52 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal POD O5 C13 DOUB N N 1 POD C13 O4 SING N N 2 POD C13 C10 SING N N 3 POD O4 C12 SING N N 4 POD C10 C9 SING N N 5 POD C10 C11 SING N N 6 POD C10 H10 SING N N 7 POD C9 C12 SING N N 8 POD C9 C8 SING N N 9 POD C9 H9 SING N N 10 POD C12 H121 SING N N 11 POD C12 H122 SING N N 12 POD C11 C5 SING N N 13 POD C11 C14 SING N N 14 POD C11 H11 SING N N 15 POD C5 C6 SING Y N 16 POD C5 C4 DOUB Y N 17 POD C6 C8 SING N N 18 POD C6 C7 DOUB Y N 19 POD C8 O3 SING N N 20 POD C8 H8 SING N N 21 POD O3 HO3 SING N N 22 POD C7 C2 SING Y N 23 POD C7 H7 SING N N 24 POD C2 C3 DOUB Y N 25 POD C2 O2 SING N N 26 POD C3 C4 SING Y N 27 POD C3 O1 SING N N 28 POD C4 H4 SING N N 29 POD O2 C1 SING N N 30 POD C1 O1 SING N N 31 POD C1 H11A SING N N 32 POD C1 H12 SING N N 33 POD C14 C15 SING Y N 34 POD C14 C19 DOUB Y N 35 POD C15 C16 DOUB Y N 36 POD C15 H15 SING N N 37 POD C16 O6 SING N N 38 POD C16 C17 SING Y N 39 POD O6 C20 SING N N 40 POD C20 H201 SING N N 41 POD C20 H202 SING N N 42 POD C20 H203 SING N N 43 POD C17 O7 SING N N 44 POD C17 C18 DOUB Y N 45 POD O7 C21 SING N N 46 POD C21 H211 SING N N 47 POD C21 H212 SING N N 48 POD C21 H213 SING N N 49 POD C18 C19 SING Y N 50 POD C18 O8 SING N N 51 POD C19 H19 SING N N 52 POD O8 C22 SING N N 53 POD C22 H221 SING N N 54 POD C22 H222 SING N N 55 POD C22 H223 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor POD SMILES ACDLabs 10.04 "O=C4OCC5C(O)c2cc1OCOc1cc2C(c3cc(OC)c(OC)c(OC)c3)C45" POD SMILES_CANONICAL CACTVS 3.341 "COc1cc(cc(OC)c1OC)[C@H]2[C@@H]3[C@H](COC3=O)[C@@H](O)c4cc5OCOc5cc24" POD SMILES CACTVS 3.341 "COc1cc(cc(OC)c1OC)[CH]2[CH]3[CH](COC3=O)[CH](O)c4cc5OCOc5cc24" POD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1cc(cc(c1OC)OC)[C@@H]2c3cc4c(cc3[C@@H]([C@@H]5C2C(=O)OC5)O)OCO4" POD SMILES "OpenEye OEToolkits" 1.5.0 "COc1cc(cc(c1OC)OC)C2c3cc4c(cc3C(C5C2C(=O)OC5)O)OCO4" POD InChI InChI 1.03 "InChI=1S/C22H22O8/c1-25-16-4-10(5-17(26-2)21(16)27-3)18-11-6-14-15(30-9-29-14)7-12(11)20(23)13-8-28-22(24)19(13)18/h4-7,13,18-20,23H,8-9H2,1-3H3/t13-,18+,19-,20-/m0/s1" POD InChIKey InChI 1.03 YJGVMLPVUAXIQN-XVVDYKMHSA-N # _pdbx_chem_comp_identifier.comp_id POD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "(5R,5aR,8aR,9R)-9-hydroxy-5-(3,4,5-trimethoxyphenyl)-5,8,8a,9-tetrahydrofuro[3',4':6,7]naphtho[2,3-d][1,3]dioxol-6(5aH)-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site POD "Create component" 2004-03-04 RCSB POD "Modify descriptor" 2011-06-04 RCSB POD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id POD _pdbx_chem_comp_synonyms.name PODOPHYLLOTOXIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##