data_POP # _chem_comp.id POP _chem_comp.name "PYROPHOSPHATE 2-" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "H2 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 175.959 _chem_comp.one_letter_code ? _chem_comp.three_letter_code POP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2NSY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal POP P1 P1 P 0 1 N N N N N N -3.363 58.546 16.801 1.293 -0.004 -0.073 P1 POP 1 POP O1 O1 O 0 1 N N N N N N -2.799 59.697 17.650 1.553 -1.483 0.288 O1 POP 2 POP O2 O2 O 0 1 N N N N N N -3.807 59.004 15.450 2.575 0.594 -0.842 O2 POP 3 POP O3 O3 O -1 1 N N N N N N -4.338 57.778 17.518 1.043 0.806 1.219 O3 POP 4 POP O O O 0 1 N N N N N N -2.061 57.601 16.500 0.000 0.097 -1.027 O POP 5 POP P2 P2 P 0 1 N N N N N N -1.235 56.817 17.677 -1.292 0.001 -0.071 P2 POP 6 POP O4 O4 O 0 1 N N N N N N -0.273 55.917 16.864 -1.484 -1.460 0.393 O4 POP 7 POP O5 O5 O 0 1 N N N N N N -0.479 57.937 18.386 -2.597 0.482 -0.882 O5 POP 8 POP O6 O6 O -1 1 N Y N N N N -2.162 56.022 18.486 -1.089 0.910 1.162 O6 POP 9 POP HO2 HO2 H 0 1 N N N N N N -4.155 58.292 14.925 3.325 0.515 -0.237 HO2 POP 10 POP HO5 HO5 H 0 1 N N N N N N 0.000 57.482 19.068 -3.346 0.410 -0.275 HO5 POP 11 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal POP P1 O1 DOUB N N 1 POP P1 O2 SING N N 2 POP P1 O3 SING N N 3 POP P1 O SING N N 4 POP O2 HO2 SING N N 5 POP O P2 SING N N 6 POP P2 O4 DOUB N N 7 POP P2 O5 SING N N 8 POP P2 O6 SING N N 9 POP O5 HO5 SING N N 10 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor POP SMILES ACDLabs 10.04 "[O-]P(=O)(O)OP([O-])(=O)O" POP SMILES_CANONICAL CACTVS 3.341 "O[P]([O-])(=O)O[P](O)([O-])=O" POP SMILES CACTVS 3.341 "O[P]([O-])(=O)O[P](O)([O-])=O" POP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "O[P@@](=O)([O-])O[P@@](=O)(O)[O-]" POP SMILES "OpenEye OEToolkits" 1.5.0 "OP(=O)([O-])OP(=O)(O)[O-]" POP InChI InChI 1.03 "InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)/p-2" POP InChIKey InChI 1.03 XPPKVPWEQAFLFU-UHFFFAOYSA-L # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier POP "SYSTEMATIC NAME" ACDLabs 10.04 "dihydrogen diphosphate" POP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(hydroxy-oxido-phosphoryl) hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site POP "Create component" 1999-07-08 EBI POP "Modify descriptor" 2011-06-04 RCSB POP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id POP _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #