data_PP3
#
_chem_comp.id PP3
_chem_comp.name "ALANYL-PYRIDOXAL-5'-PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H17 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PYRIDOXYL-ALANINE-5-PHOSPHATE; VITAMIN B6 COMPLEXED WITH ALANINE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-08-12
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces PDL
_chem_comp.formula_weight 320.236
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PP3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1C9C
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PP3 N1 N1 N 0 1 Y N N 26.646 5.032 -14.758 3.608 0.630 -0.016 N1 PP3 1
PP3 C2 C2 C 0 1 Y N N 26.364 6.220 -15.382 3.541 0.325 1.264 C2 PP3 2
PP3 C2A C2A C 0 1 N N N 27.111 6.282 -16.701 4.743 0.542 2.146 C2A PP3 3
PP3 C3 C3 C 0 1 Y N N 25.484 7.131 -14.730 2.376 -0.194 1.807 C3 PP3 4
PP3 O3 O3 O 0 1 N N N 25.317 8.246 -15.485 2.311 -0.507 3.128 O3 PP3 5
PP3 C4 C4 C 0 1 Y N N 24.884 6.877 -13.485 1.273 -0.389 0.981 C4 PP3 6
PP3 C4A C4A C 0 1 N N N 23.935 7.874 -12.817 -0.012 -0.951 1.530 C4A PP3 7
PP3 C5 C5 C 0 1 Y N N 25.265 5.598 -12.957 1.389 -0.061 -0.359 C5 PP3 8
PP3 C6 C6 C 0 1 Y N N 26.120 4.699 -13.554 2.582 0.456 -0.826 C6 PP3 9
PP3 C5A C5A C 0 1 N N N 24.763 5.065 -11.613 0.223 -0.254 -1.294 C5A PP3 10
PP3 O4P O4P O 0 1 N N N 23.541 5.504 -11.158 0.592 0.168 -2.608 O4P PP3 11
PP3 P P P 0 1 N N N 22.736 4.817 -9.969 -0.692 -0.064 -3.550 P PP3 12
PP3 O1P O1P O 0 1 N N N 22.163 3.559 -10.350 -1.828 0.734 -3.041 O1P PP3 13
PP3 O2P O2P O 0 1 N N N 21.924 5.931 -9.394 -0.345 0.392 -5.054 O2P PP3 14
PP3 O3P O3P O 0 1 N N N 23.783 4.408 -8.973 -1.087 -1.625 -3.541 O3P PP3 15
PP3 N N N 0 1 N N N 24.369 9.207 -13.395 -0.869 0.148 1.991 N PP3 16
PP3 CA CA C 0 1 N N S 23.467 10.303 -12.927 -2.099 -0.463 2.511 CA PP3 17
PP3 C C C 0 1 N N N 23.934 11.660 -13.515 -3.254 0.484 2.316 C PP3 18
PP3 O O O 0 1 N N N 24.658 11.488 -14.659 -3.072 1.560 1.797 O PP3 19
PP3 CB CB C 0 1 N N N 23.449 10.318 -11.406 -1.930 -0.760 4.003 CB PP3 20
PP3 OXT OXT O 0 1 N N N 23.679 12.836 -12.982 -4.486 0.133 2.719 OXT PP3 21
PP3 H2A1 1H2A H 0 0 N N N 26.881 7.248 -17.208 5.359 -0.356 2.149 H2A1 PP3 22
PP3 H2A2 2H2A H 0 0 N N N 28.207 6.120 -16.574 5.327 1.381 1.765 H2A2 PP3 23
PP3 H2A3 3H2A H 0 0 N N N 26.895 5.401 -17.350 4.414 0.760 3.162 H2A3 PP3 24
PP3 HO3 HO3 H 0 1 N N N 24.730 8.853 -15.050 2.592 -1.429 3.211 HO3 PP3 25
PP3 H4A1 1H4A H 0 0 N N N 22.852 7.642 -12.947 0.208 -1.614 2.367 H4A1 PP3 26
PP3 H4A2 2H4A H 0 0 N N N 23.927 7.832 -11.702 -0.527 -1.510 0.749 H4A2 PP3 27
PP3 H6 H6 H 0 1 N N N 26.377 3.736 -13.079 2.677 0.719 -1.870 H6 PP3 28
PP3 H5A1 1H5A H 0 0 N N N 24.763 3.950 -11.639 -0.053 -1.308 -1.316 H5A1 PP3 29
PP3 H5A2 2H5A H 0 0 N N N 25.534 5.259 -10.832 -0.623 0.337 -0.946 H5A2 PP3 30
PP3 HOP2 2HOP H 0 0 N N N 21.443 5.521 -8.684 -1.139 0.236 -5.584 HOP2 PP3 31
PP3 HOP3 3HOP H 0 0 N N N 23.302 3.998 -8.263 -0.322 -2.109 -3.880 HOP3 PP3 32
PP3 HN2 HN2 H 0 1 N N N 24.430 9.176 -14.412 -1.132 0.675 1.171 HN2 PP3 33
PP3 HA HA H 0 1 N N N 22.426 10.126 -13.285 -2.297 -1.392 1.976 HA PP3 34
PP3 HB1 1HB H 0 1 N N N 22.776 11.135 -11.056 -1.732 0.167 4.538 HB1 PP3 35
PP3 HB2 2HB H 0 1 N N N 23.171 9.327 -10.975 -2.842 -1.215 4.389 HB2 PP3 36
PP3 HB3 3HB H 0 1 N N N 24.472 10.396 -10.970 -1.094 -1.446 4.144 HB3 PP3 37
PP3 HXT HXT H 0 1 N N N 23.965 13.667 -13.342 -5.227 0.742 2.594 HXT PP3 38
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PP3 N1 C2 DOUB Y N 1
PP3 N1 C6 SING Y N 2
PP3 C2 C2A SING N N 3
PP3 C2 C3 SING Y N 4
PP3 C2A H2A1 SING N N 5
PP3 C2A H2A2 SING N N 6
PP3 C2A H2A3 SING N N 7
PP3 C3 O3 SING N N 8
PP3 C3 C4 DOUB Y N 9
PP3 O3 HO3 SING N N 10
PP3 C4 C4A SING N N 11
PP3 C4 C5 SING Y N 12
PP3 C4A N SING N N 13
PP3 C4A H4A1 SING N N 14
PP3 C4A H4A2 SING N N 15
PP3 C5 C6 DOUB Y N 16
PP3 C5 C5A SING N N 17
PP3 C6 H6 SING N N 18
PP3 C5A O4P SING N N 19
PP3 C5A H5A1 SING N N 20
PP3 C5A H5A2 SING N N 21
PP3 O4P P SING N N 22
PP3 P O1P DOUB N N 23
PP3 P O2P SING N N 24
PP3 P O3P SING N N 25
PP3 O2P HOP2 SING N N 26
PP3 O3P HOP3 SING N N 27
PP3 N CA SING N N 28
PP3 N HN2 SING N N 29
PP3 CA C SING N N 30
PP3 CA CB SING N N 31
PP3 CA HA SING N N 32
PP3 C O DOUB N N 33
PP3 C OXT SING N N 34
PP3 CB HB1 SING N N 35
PP3 CB HB2 SING N N 36
PP3 CB HB3 SING N N 37
PP3 OXT HXT SING N N 38
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PP3 SMILES ACDLabs 10.04 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)C"
PP3 SMILES_CANONICAL CACTVS 3.341 "C[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"
PP3 SMILES CACTVS 3.341 "C[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"
PP3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](C)C(=O)O)O"
PP3 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)C(=O)O)O"
PP3 InChI InChI 1.03 "InChI=1S/C11H17N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3,7,13-14H,4-5H2,1-2H3,(H,15,16)(H2,17,18,19)/t7-/m0/s1"
PP3 InChIKey InChI 1.03 WACJCHFWJNNBPR-ZETCQYMHSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PP3 "SYSTEMATIC NAME" ACDLabs 10.04 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-alanine"
PP3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PP3 "Create component" 1999-08-12 RCSB
PP3 "Modify descriptor" 2011-06-04 RCSB
PP3 "Modify synonyms" 2020-06-05 PDBE
# #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 PP3 PYRIDOXYL-ALANINE-5-PHOSPHATE ? ?
2 PP3 "VITAMIN B6 COMPLEXED WITH ALANINE" ? ?
##