data_PP3
#

_chem_comp.id                                   PP3
_chem_comp.name                                 "ALANYL-PYRIDOXAL-5'-PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "PYRIDOXYL-ALANINE-5-PHOSPHATE; VITAMIN B6 COMPLEXED WITH ALANINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-08-12
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        PDL
_chem_comp.formula_weight                       320.236
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PP3
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1C9C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PP3  N1    N1    N  0  1  Y  N  N  26.646   5.032  -14.758   3.608   0.630  -0.016  N1    PP3   1  
PP3  C2    C2    C  0  1  Y  N  N  26.364   6.220  -15.382   3.541   0.325   1.264  C2    PP3   2  
PP3  C2A   C2A   C  0  1  N  N  N  27.111   6.282  -16.701   4.743   0.542   2.146  C2A   PP3   3  
PP3  C3    C3    C  0  1  Y  N  N  25.484   7.131  -14.730   2.376  -0.194   1.807  C3    PP3   4  
PP3  O3    O3    O  0  1  N  N  N  25.317   8.246  -15.485   2.311  -0.507   3.128  O3    PP3   5  
PP3  C4    C4    C  0  1  Y  N  N  24.884   6.877  -13.485   1.273  -0.389   0.981  C4    PP3   6  
PP3  C4A   C4A   C  0  1  N  N  N  23.935   7.874  -12.817  -0.012  -0.951   1.530  C4A   PP3   7  
PP3  C5    C5    C  0  1  Y  N  N  25.265   5.598  -12.957   1.389  -0.061  -0.359  C5    PP3   8  
PP3  C6    C6    C  0  1  Y  N  N  26.120   4.699  -13.554   2.582   0.456  -0.826  C6    PP3   9  
PP3  C5A   C5A   C  0  1  N  N  N  24.763   5.065  -11.613   0.223  -0.254  -1.294  C5A   PP3  10  
PP3  O4P   O4P   O  0  1  N  N  N  23.541   5.504  -11.158   0.592   0.168  -2.608  O4P   PP3  11  
PP3  P     P     P  0  1  N  N  N  22.736   4.817   -9.969  -0.692  -0.064  -3.550  P     PP3  12  
PP3  O1P   O1P   O  0  1  N  N  N  22.163   3.559  -10.350  -1.828   0.734  -3.041  O1P   PP3  13  
PP3  O2P   O2P   O  0  1  N  N  N  21.924   5.931   -9.394  -0.345   0.392  -5.054  O2P   PP3  14  
PP3  O3P   O3P   O  0  1  N  N  N  23.783   4.408   -8.973  -1.087  -1.625  -3.541  O3P   PP3  15  
PP3  N     N     N  0  1  N  N  N  24.369   9.207  -13.395  -0.869   0.148   1.991  N     PP3  16  
PP3  CA    CA    C  0  1  N  N  S  23.467  10.303  -12.927  -2.099  -0.463   2.511  CA    PP3  17  
PP3  C     C     C  0  1  N  N  N  23.934  11.660  -13.515  -3.254   0.484   2.316  C     PP3  18  
PP3  O     O     O  0  1  N  N  N  24.658  11.488  -14.659  -3.072   1.560   1.797  O     PP3  19  
PP3  CB    CB    C  0  1  N  N  N  23.449  10.318  -11.406  -1.930  -0.760   4.003  CB    PP3  20  
PP3  OXT   OXT   O  0  1  N  N  N  23.679  12.836  -12.982  -4.486   0.133   2.719  OXT   PP3  21  
PP3  H2A1  1H2A  H  0  0  N  N  N  26.881   7.248  -17.208   5.359  -0.356   2.149  H2A1  PP3  22  
PP3  H2A2  2H2A  H  0  0  N  N  N  28.207   6.120  -16.574   5.327   1.381   1.765  H2A2  PP3  23  
PP3  H2A3  3H2A  H  0  0  N  N  N  26.895   5.401  -17.350   4.414   0.760   3.162  H2A3  PP3  24  
PP3  HO3   HO3   H  0  1  N  N  N  24.730   8.853  -15.050   2.592  -1.429   3.211  HO3   PP3  25  
PP3  H4A1  1H4A  H  0  0  N  N  N  22.852   7.642  -12.947   0.208  -1.614   2.367  H4A1  PP3  26  
PP3  H4A2  2H4A  H  0  0  N  N  N  23.927   7.832  -11.702  -0.527  -1.510   0.749  H4A2  PP3  27  
PP3  H6    H6    H  0  1  N  N  N  26.377   3.736  -13.079   2.677   0.719  -1.870  H6    PP3  28  
PP3  H5A1  1H5A  H  0  0  N  N  N  24.763   3.950  -11.639  -0.053  -1.308  -1.316  H5A1  PP3  29  
PP3  H5A2  2H5A  H  0  0  N  N  N  25.534   5.259  -10.832  -0.623   0.337  -0.946  H5A2  PP3  30  
PP3  HOP2  2HOP  H  0  0  N  N  N  21.443   5.521   -8.684  -1.139   0.236  -5.584  HOP2  PP3  31  
PP3  HOP3  3HOP  H  0  0  N  N  N  23.302   3.998   -8.263  -0.322  -2.109  -3.880  HOP3  PP3  32  
PP3  HN2   HN2   H  0  1  N  N  N  24.430   9.176  -14.412  -1.132   0.675   1.171  HN2   PP3  33  
PP3  HA    HA    H  0  1  N  N  N  22.426  10.126  -13.285  -2.297  -1.392   1.976  HA    PP3  34  
PP3  HB1   1HB   H  0  1  N  N  N  22.776  11.135  -11.056  -1.732   0.167   4.538  HB1   PP3  35  
PP3  HB2   2HB   H  0  1  N  N  N  23.171   9.327  -10.975  -2.842  -1.215   4.389  HB2   PP3  36  
PP3  HB3   3HB   H  0  1  N  N  N  24.472  10.396  -10.970  -1.094  -1.446   4.144  HB3   PP3  37  
PP3  HXT   HXT   H  0  1  N  N  N  23.965  13.667  -13.342  -5.227   0.742   2.594  HXT   PP3  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PP3  N1   C2    DOUB  Y  N   1  
PP3  N1   C6    SING  Y  N   2  
PP3  C2   C2A   SING  N  N   3  
PP3  C2   C3    SING  Y  N   4  
PP3  C2A  H2A1  SING  N  N   5  
PP3  C2A  H2A2  SING  N  N   6  
PP3  C2A  H2A3  SING  N  N   7  
PP3  C3   O3    SING  N  N   8  
PP3  C3   C4    DOUB  Y  N   9  
PP3  O3   HO3   SING  N  N  10  
PP3  C4   C4A   SING  N  N  11  
PP3  C4   C5    SING  Y  N  12  
PP3  C4A  N     SING  N  N  13  
PP3  C4A  H4A1  SING  N  N  14  
PP3  C4A  H4A2  SING  N  N  15  
PP3  C5   C6    DOUB  Y  N  16  
PP3  C5   C5A   SING  N  N  17  
PP3  C6   H6    SING  N  N  18  
PP3  C5A  O4P   SING  N  N  19  
PP3  C5A  H5A1  SING  N  N  20  
PP3  C5A  H5A2  SING  N  N  21  
PP3  O4P  P     SING  N  N  22  
PP3  P    O1P   DOUB  N  N  23  
PP3  P    O2P   SING  N  N  24  
PP3  P    O3P   SING  N  N  25  
PP3  O2P  HOP2  SING  N  N  26  
PP3  O3P  HOP3  SING  N  N  27  
PP3  N    CA    SING  N  N  28  
PP3  N    HN2   SING  N  N  29  
PP3  CA   C     SING  N  N  30  
PP3  CA   CB    SING  N  N  31  
PP3  CA   HA    SING  N  N  32  
PP3  C    O     DOUB  N  N  33  
PP3  C    OXT   SING  N  N  34  
PP3  CB   HB1   SING  N  N  35  
PP3  CB   HB2   SING  N  N  36  
PP3  CB   HB3   SING  N  N  37  
PP3  OXT  HXT   SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PP3  SMILES            ACDLabs               10.04  "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)C"  
PP3  SMILES_CANONICAL  CACTVS                3.341  "C[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
PP3  SMILES            CACTVS                3.341  "C[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"  
PP3  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H](C)C(=O)O)O"  
PP3  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C)C(=O)O)O"  
PP3  InChI             InChI                 1.03   "InChI=1S/C11H17N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3,7,13-14H,4-5H2,1-2H3,(H,15,16)(H2,17,18,19)/t7-/m0/s1"  
PP3  InChIKey          InChI                 1.03   WACJCHFWJNNBPR-ZETCQYMHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PP3  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-alanine"  
PP3  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PP3  "Create component"   1999-08-12  RCSB  
PP3  "Modify descriptor"  2011-06-04  RCSB  
PP3  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  PP3  PYRIDOXYL-ALANINE-5-PHOSPHATE        ?  ?  
2  PP3  "VITAMIN B6 COMPLEXED WITH ALANINE"  ?  ?  
##