data_PPE
#
_chem_comp.id PPE
_chem_comp.name "4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H20 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 379.280
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code PPE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1AKC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PPE N1 N1 N 1 1 Y N N 43.690 15.780 44.946 2.672 3.074 1.048 N1 PPE 1
PPE C2 C2 C 0 1 Y N N 44.982 15.456 45.262 1.598 3.807 0.825 C2 PPE 2
PPE C2A C2A C 0 1 N N N 45.385 16.208 46.515 1.571 5.244 1.276 C2A PPE 3
PPE C3 C3 C 0 1 Y N N 45.684 14.520 44.414 0.492 3.266 0.187 C3 PPE 4
PPE O3 O3 O 0 1 N N N 46.951 14.302 44.857 -0.612 4.025 -0.040 O3 PPE 5
PPE C4 C4 C 0 1 Y N N 45.127 13.953 43.271 0.533 1.939 -0.229 C4 PPE 6
PPE C4A C4A C 0 1 N N N 45.910 12.991 42.388 -0.644 1.313 -0.932 C4A PPE 7
PPE C5 C5 C 0 1 Y N N 43.783 14.383 43.069 1.680 1.205 0.025 C5 PPE 8
PPE C6 C6 C 0 1 Y N N 43.078 15.263 43.863 2.741 1.812 0.673 C6 PPE 9
PPE C5A C5A C 0 1 N N N 42.944 13.928 41.870 1.771 -0.238 -0.399 C5A PPE 10
PPE OP4 OP4 O 0 1 N N N 43.304 12.764 41.224 3.046 -0.766 -0.024 OP4 PPE 11
PPE P P P 0 1 N N N 42.356 12.019 40.166 3.073 -2.302 -0.505 P PPE 12
PPE OP1 OP1 O 0 1 N N N 41.215 11.392 40.783 4.533 -2.924 -0.231 OP1 PPE 13
PPE OP2 OP2 O 0 1 N N N 43.312 11.235 39.288 1.970 -3.141 0.315 OP2 PPE 14
PPE OP3 OP3 O 0 1 N N N 41.745 13.164 39.392 2.771 -2.372 -1.952 OP3 PPE 15
PPE NA NA N 0 1 N N N 47.335 13.514 42.508 -1.548 0.718 0.062 NA PPE 16
PPE CAA CAA C 0 1 N N S 48.314 12.379 42.400 -2.667 0.129 -0.686 CAA PPE 17
PPE CBA CBA C 0 1 N N N 48.049 11.541 41.157 -3.292 -0.999 0.138 CBA PPE 18
PPE CGA CGA C 0 1 N N N 48.620 12.120 39.873 -2.277 -2.131 0.306 CGA PPE 19
PPE CDA CDA C 0 1 N N N 47.909 13.411 39.512 -2.894 -3.242 1.117 CDA PPE 20
PPE OE1 OE1 O 0 1 N N N 48.432 14.428 39.910 -2.182 -4.346 1.392 OE1 PPE 21
PPE OE2 OE2 O 0 1 N N N 46.893 13.248 38.812 -4.028 -3.138 1.519 OE2 PPE 22
PPE CA CA C 0 1 N N N 49.757 12.909 42.428 -3.704 1.188 -0.956 CA PPE 23
PPE OA OA O 0 1 N N N 49.822 14.084 43.116 -4.822 0.877 -1.629 OA PPE 24
PPE OXT OXT O 0 1 N N N 50.793 12.290 41.896 -3.528 2.318 -0.566 OXT PPE 25
PPE HN1 HN1 H 0 1 N N N 43.166 16.427 45.536 3.431 3.474 1.500 HN1 PPE 26
PPE H2A1 1H2A H 0 0 N N N 46.437 15.944 46.772 1.951 5.882 0.478 H2A1 PPE 27
PPE H2A2 2H2A H 0 0 N N N 45.234 17.308 46.417 0.546 5.531 1.514 H2A2 PPE 28
PPE H2A3 3H2A H 0 0 N N N 44.682 16.029 47.362 2.195 5.360 2.162 H2A3 PPE 29
PPE HO3 HO3 H 0 1 N N N 47.412 13.686 44.299 -1.189 3.916 0.728 HO3 PPE 30
PPE H4A1 1H4A H 0 0 N N N 45.784 11.913 42.643 -1.178 2.077 -1.497 H4A1 PPE 31
PPE H4A2 2H4A H 0 0 N N N 45.531 12.900 41.343 -0.291 0.538 -1.612 H4A2 PPE 32
PPE H6 H6 H 0 1 N N N 42.037 15.549 43.634 3.637 1.245 0.873 H6 PPE 33
PPE H5A1 1H5A H 0 0 N N N 41.875 13.855 42.180 0.983 -0.811 0.090 H5A1 PPE 34
PPE H5A2 2H5A H 0 0 N N N 42.894 14.756 41.125 1.653 -0.308 -1.480 H5A2 PPE 35
PPE HOP2 2HOP H 0 0 N N N 42.750 10.793 38.661 2.204 -3.070 1.251 HOP2 PPE 36
PPE HOP3 3HOP H 0 0 N N N 41.183 12.722 38.765 ? ? ? HOP3 PPE 37
PPE HNA HNA H 0 1 N N N 47.471 14.055 43.361 -1.047 -0.049 0.486 HNA PPE 38
PPE HAA HAA H 0 1 N N N 48.176 11.711 43.282 -2.302 -0.272 -1.631 HAA PPE 39
PPE HBA1 1HBA H 0 0 N N N 48.412 10.497 41.307 -3.577 -0.618 1.118 HBA1 PPE 40
PPE HBA2 2HBA H 0 0 N N N 46.956 11.348 41.044 -4.176 -1.377 -0.376 HBA2 PPE 41
PPE HGA1 1HGA H 0 0 N N N 49.724 12.258 39.935 -1.993 -2.513 -0.675 HGA1 PPE 42
PPE HGA2 2HGA H 0 0 N N N 48.591 11.382 39.036 -1.393 -1.754 0.820 HGA2 PPE 43
PPE HOE2 2HOE H 0 0 N N N 46.447 14.056 38.586 ? ? ? HOE2 PPE 44
PPE HXT HXT H 0 1 N N N 51.684 12.617 41.913 ? ? ? HXT PPE 45
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PPE N1 C2 SING Y N 1
PPE N1 C6 DOUB Y N 2
PPE N1 HN1 SING N N 3
PPE C2 C2A SING N N 4
PPE C2 C3 DOUB Y N 5
PPE C2A H2A1 SING N N 6
PPE C2A H2A2 SING N N 7
PPE C2A H2A3 SING N N 8
PPE C3 O3 SING N N 9
PPE C3 C4 SING Y N 10
PPE O3 HO3 SING N N 11
PPE C4 C4A SING N N 12
PPE C4 C5 DOUB Y N 13
PPE C4A NA SING N N 14
PPE C4A H4A1 SING N N 15
PPE C4A H4A2 SING N N 16
PPE C5 C6 SING Y N 17
PPE C5 C5A SING N N 18
PPE C6 H6 SING N N 19
PPE C5A OP4 SING N N 20
PPE C5A H5A1 SING N N 21
PPE C5A H5A2 SING N N 22
PPE OP4 P SING N N 23
PPE P OP1 DOUB N N 24
PPE P OP2 SING N N 25
PPE P OP3 SING N N 26
PPE OP2 HOP2 SING N N 27
PPE OP3 HOP3 SING N N 28
PPE NA CAA SING N N 29
PPE NA HNA SING N N 30
PPE CAA CBA SING N N 31
PPE CAA CA SING N N 32
PPE CAA HAA SING N N 33
PPE CBA CGA SING N N 34
PPE CBA HBA1 SING N N 35
PPE CBA HBA2 SING N N 36
PPE CGA CDA SING N N 37
PPE CGA HGA1 SING N N 38
PPE CGA HGA2 SING N N 39
PPE CDA OE1 DOUB N N 40
PPE CDA OE2 SING N N 41
PPE OE2 HOE2 SING N N 42
PPE CA OA DOUB N N 43
PPE CA OXT SING N N 44
PPE OXT HXT SING N N 45
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PPE SMILES ACDLabs 10.04 "O=C(O)C(NCc1c(c[nH+]c(c1O)C)COP(=O)(O)O)CCC(=O)O"
PPE SMILES_CANONICAL CACTVS 3.341 "Cc1[nH+]cc(CO[P](O)(O)=O)c(CN[C@@H](CCC(O)=O)C(O)=O)c1O"
PPE SMILES CACTVS 3.341 "Cc1[nH+]cc(CO[P](O)(O)=O)c(CN[CH](CCC(O)=O)C(O)=O)c1O"
PPE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)CN[C@@H](CCC(=O)O)C(=O)O)O"
PPE SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(c[nH+]1)COP(=O)(O)O)CNC(CCC(=O)O)C(=O)O)O"
PPE InChI InChI 1.03 "InChI=1S/C13H19N2O9P/c1-7-12(18)9(8(4-14-7)6-24-25(21,22)23)5-15-10(13(19)20)2-3-11(16)17/h4,10,15,18H,2-3,5-6H2,1H3,(H,16,17)(H,19,20)(H2,21,22,23)/p+1/t10-/m0/s1"
PPE InChIKey InChI 1.03 JMRKOGDJNHPMHS-JTQLQIEISA-O
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
PPE "SYSTEMATIC NAME" ACDLabs 10.04 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridinium-4-yl}methyl)-L-glutamic acid"
PPE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-1-ium-4-yl]methylamino]pentanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PPE "Create component" 1999-07-08 RCSB
PPE "Modify descriptor" 2011-06-04 RCSB
PPE "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id PPE
_pdbx_chem_comp_synonyms.name "PYRIDOXYL-GLUTAMIC ACID-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##